Arun James Thirunavukarasu

AI
h-index18
4papers
12citations
Novelty51%
AI Score45

4 Papers

2.4AIFeb 5
Clinical Validation of Medical-based Large Language Model Chatbots on Ophthalmic Patient Queries with LLM-based Evaluation

Ting Fang Tan, Kabilan Elangovan, Andreas Pollreisz et al.

Domain specific large language models are increasingly used to support patient education, triage, and clinical decision making in ophthalmology, making rigorous evaluation essential to ensure safety and accuracy. This study evaluated four small medical LLMs Meerkat-7B, BioMistral-7B, OpenBioLLM-8B, and MedLLaMA3-v20 in answering ophthalmology related patient queries and assessed the feasibility of LLM based evaluation against clinician grading. In this cross sectional study, 180 ophthalmology patient queries were answered by each model, generating 2160 responses. Models were selected for parameter sizes under 10 billion to enable resource efficient deployment. Responses were evaluated by three ophthalmologists of differing seniority and by GPT-4-Turbo using the S.C.O.R.E. framework assessing safety, consensus and context, objectivity, reproducibility, and explainability, with ratings assigned on a five point Likert scale. Agreement between LLM and clinician grading was assessed using Spearman rank correlation, Kendall tau statistics, and kernel density estimate analyses. Meerkat-7B achieved the highest performance with mean scores of 3.44 from Senior Consultants, 4.08 from Consultants, and 4.18 from Residents. MedLLaMA3-v20 performed poorest, with 25.5 percent of responses containing hallucinations or clinically misleading content, including fabricated terminology. GPT-4-Turbo grading showed strong alignment with clinician assessments overall, with Spearman rho of 0.80 and Kendall tau of 0.67, though Senior Consultants graded more conservatively. Overall, medical LLMs demonstrated potential for safe ophthalmic question answering, but gaps remained in clinical depth and consensus, supporting the feasibility of LLM based evaluation for large scale benchmarking and the need for hybrid automated and clinician review frameworks to guide safe clinical deployment.

4.1LGJun 30, 2025Code
$μ^2$Tokenizer: Differentiable Multi-Scale Multi-Modal Tokenizer for Radiology Report Generation

Siyou Li, Pengyao Qin, Huanan Wu et al.

Automated radiology report generation (RRG) aims to produce detailed textual reports from clinical imaging, such as computed tomography (CT) scans, to improve the accuracy and efficiency of diagnosis and provision of management advice. RRG is complicated by two key challenges: (1) inherent complexity in extracting relevant information from imaging data under resource constraints, and (2) difficulty in objectively evaluating discrepancies between model-generated and expert-written reports. To address these challenges, we propose $μ^2$LLM, a $\underline{\textbf{mu}}$ltiscale $\underline{\textbf{mu}}$ltimodal large language models for RRG tasks. The novel $μ^2$Tokenizer, as an intermediate layer, integrates multi-modal features from the multiscale visual tokenizer and the text tokenizer, then enhances report generation quality through direct preference optimization (DPO), guided by GREEN-RedLlama. Experimental results on four large CT image-report medical datasets demonstrate that our method outperforms existing approaches, highlighting the potential of our fine-tuned $μ^2$LLMs on limited data for RRG tasks. At the same time, for prompt engineering, we introduce a five-stage, LLM-driven pipeline that converts routine CT reports into paired visual-question-answer triples and citation-linked reasoning narratives, creating a scalable, high-quality supervisory corpus for explainable multimodal radiology LLM. All code, datasets, and models will be publicly available in our official repository. https://github.com/Siyou-Li/u2Tokenizer

5.5CLNov 3, 2024
High-performance automated abstract screening with large language model ensembles

Rohan Sanghera, Arun James Thirunavukarasu, Marc El Khoury et al.

Large language models (LLMs) excel in tasks requiring processing and interpretation of input text. Abstract screening is a labour-intensive component of systematic review involving repetitive application of inclusion and exclusion criteria on a large volume of studies identified by a literature search. Here, LLMs (GPT-3.5 Turbo, GPT-4 Turbo, GPT-4o, Llama 3 70B, Gemini 1.5 Pro, and Claude Sonnet 3.5) were trialled on systematic reviews in a full issue of the Cochrane Library to evaluate their accuracy in zero-shot binary classification for abstract screening. Trials over a subset of 800 records identified optimal prompting strategies and demonstrated superior performance of LLMs to human researchers in terms of sensitivity (LLM-max = 1.000, human-max = 0.775), precision (LLM-max = 0.927, human-max = 0.911), and balanced accuracy (LLM-max = 0.904, human-max = 0.865). The best performing LLM-prompt combinations were trialled across every replicated search result (n = 119,691), and exhibited consistent sensitivity (range 0.756-1.000) but diminished precision (range 0.004-0.096). 66 LLM-human and LLM-LLM ensembles exhibited perfect sensitivity with a maximal precision of 0.458, with less observed performance drop in larger trials. Significant variation in performance was observed between reviews, highlighting the importance of domain-specific validation before deployment. LLMs may reduce the human labour cost of systematic review with maintained or improved accuracy and sensitivity. Systematic review is the foundation of evidence synthesis across academic disciplines, including evidence-based medicine, and LLMs may increase the efficiency and quality of this mode of research.

3.6CVSep 29, 2025
EVLF-FM: Explainable Vision Language Foundation Model for Medicine

Yang Bai, Haoran Cheng, Yang Zhou et al.

Despite the promise of foundation models in medical AI, current systems remain limited - they are modality-specific and lack transparent reasoning processes, hindering clinical adoption. To address this gap, we present EVLF-FM, a multimodal vision-language foundation model (VLM) designed to unify broad diagnostic capability with fine-grain explainability. The development and testing of EVLF-FM encompassed over 1.3 million total samples from 23 global datasets across eleven imaging modalities related to six clinical specialties: dermatology, hepatology, ophthalmology, pathology, pulmonology, and radiology. External validation employed 8,884 independent test samples from 10 additional datasets across five imaging modalities. Technically, EVLF-FM is developed to assist with multiple disease diagnosis and visual question answering with pixel-level visual grounding and reasoning capabilities. In internal validation for disease diagnostics, EVLF-FM achieved the highest average accuracy (0.858) and F1-score (0.797), outperforming leading generalist and specialist models. In medical visual grounding, EVLF-FM also achieved stellar performance across nine modalities with average mIOU of 0.743 and Acc@0.5 of 0.837. External validations further confirmed strong zero-shot and few-shot performance, with competitive F1-scores despite a smaller model size. Through a hybrid training strategy combining supervised and visual reinforcement fine-tuning, EVLF-FM not only achieves state-of-the-art accuracy but also exhibits step-by-step reasoning, aligning outputs with visual evidence. EVLF-FM is an early multi-disease VLM model with explainability and reasoning capabilities that could advance adoption of and trust in foundation models for real-world clinical deployment.