Jiashun Cheng

Yang Liu, Jiashun Cheng, Haihong Zhao et al.

Graph Neural Networks (GNNs) with equivariant properties have emerged as powerful tools for modeling complex dynamics of multi-object physical systems. However, their generalization ability is limited by the inadequate consideration of physical inductive biases: (1) Existing studies overlook the continuity of transitions among system states, opting to employ several discrete transformation layers to learn the direct mapping between two adjacent states; (2) Most models only account for first-order velocity information, despite the fact that many physical systems are governed by second-order motion laws. To incorporate these inductive biases, we propose the Second-order Equivariant Graph Neural Ordinary Differential Equation (SEGNO). Specifically, we show how the second-order continuity can be incorporated into GNNs while maintaining the equivariant property. Furthermore, we offer theoretical insights into SEGNO, highlighting that it can learn a unique trajectory between adjacent states, which is crucial for model generalization. Additionally, we prove that the discrepancy between this learned trajectory of SEGNO and the true trajectory is bounded. Extensive experiments on complex dynamical systems including molecular dynamics and motion capture demonstrate that our model yields a significant improvement over the state-of-the-art baselines.

Ziqi Gao, Yifan Niu, Jiashun Cheng et al.

Graph neural networks (GNNs) are popular weapons for modeling relational data. Existing GNNs are not specified for attribute-incomplete graphs, making missing attribute imputation a burning issue. Until recently, many works notice that GNNs are coupled with spectral concentration, which means the spectrum obtained by GNNs concentrates on a local part in spectral domain, e.g., low-frequency due to oversmoothing issue. As a consequence, GNNs may be seriously flawed for reconstructing graph attributes as graph spectral concentration tends to cause a low imputation precision. In this work, we present a regularized graph autoencoder for graph attribute imputation, named MEGAE, which aims at mitigating spectral concentration problem by maximizing the graph spectral entropy. Notably, we first present the method for estimating graph spectral entropy without the eigen-decomposition of Laplacian matrix and provide the theoretical upper error bound. A maximum entropy regularization then acts in the latent space, which directly increases the graph spectral entropy. Extensive experiments show that MEGAE outperforms all the other state-of-the-art imputation methods on a variety of benchmark datasets.

Jiashun Cheng, Man Li, Jia Li et al.

Graph self-supervised learning (SSL) has been vastly employed to learn representations from unlabeled graphs. Existing methods can be roughly divided into predictive learning and contrastive learning, where the latter one attracts more research attention with better empirical performance. We argue that, however, predictive models weaponed with powerful decoder could achieve comparable or even better representation power than contrastive models. In this work, we propose a Wiener Graph Deconvolutional Network (WGDN), an augmentation-adaptive decoder empowered by graph wiener filter to perform information reconstruction. Theoretical analysis proves the superior reconstruction ability of graph wiener filter. Extensive experimental results on various datasets demonstrate the effectiveness of our approach.

Botao Wang, Jia Li, Yang Liu et al.

Pseudo labeling (PL) is a wide-applied strategy to enlarge the labeled dataset by self-annotating the potential samples during the training process. Several works have shown that it can improve the graph learning model performance in general. However, we notice that the incorrect labels can be fatal to the graph training process. Inappropriate PL may result in the performance degrading, especially on graph data where the noise can propagate. Surprisingly, the corresponding error is seldom theoretically analyzed in the literature. In this paper, we aim to give deep insights of PL on graph learning models. We first present the error analysis of PL strategy by showing that the error is bounded by the confidence of PL threshold and consistency of multi-view prediction. Then, we theoretically illustrate the effect of PL on convergence property. Based on the analysis, we propose a cautious pseudo labeling methodology in which we pseudo label the samples with highest confidence and multi-view consistency. Finally, extensive experiments demonstrate that the proposed strategy improves graph learning process and outperforms other PL strategies on link prediction and node classification tasks.

Jing Wu, Yang Liu, Lin Zhang et al.

Accurate weather forecasting is more than grid-wise regression: it must preserve coherent synoptic structures and physical consistency of meteorological fields, especially under autoregressive rollouts where small one-step errors can amplify into structural bias. Existing physics-priors approaches typically impose global, once-for-all constraints via architectures, regularization, or NWP coupling, offering limited state-adaptive and sample-specific controllability at deployment. To bridge this gap, we propose Agent-Guided Cross-modal Decoding (AGCD), a plug-and-play decoding-time prior-injection paradigm that derives state-conditioned physics-priors from the current multivariate atmosphere and injects them into forecasters in a controllable and reusable way. Specifically, We design a multi-agent meteorological narration pipeline to generate state-conditioned physics-priors, utilizing MLLMs to extract various meteorological elements effectively. To effectively apply the priors, AGCD further introduce cross-modal region interaction decoding that performs region-aware multi-scale tokenization and efficient physics-priors injection to refine visual features without changing the backbone interface. Experiments on WeatherBench demonstrate consistent gains for 6-hour forecasting across two resolutions (5.625 degree and 1.40625 degree) and diverse backbones (generic and weather-specialized), including strictly causal 48-hour autoregressive rollouts that reduce early-stage error accumulation and improve long-horizon stability.

Aochuan Chen, Jiashun Cheng, Zijing Liu et al.

Low-Rank Adaptation (LoRA) has gained popularity for fine-tuning large foundation models, leveraging low-rank matrices $\mathbf{A}$ and $\mathbf{B}$ to represent weight changes (i.e., $Δ\mathbf{W} = \mathbf{B} \mathbf{A}$). This method reduces trainable parameters and mitigates heavy memory consumption associated with full delta matrices by sequentially multiplying $\mathbf{A}$ and $\mathbf{B}$ with the activation. Despite its success, the intrinsic low-rank characteristic may limit its performance. Although several variants have been proposed to address this issue, they often overlook the crucial computational and memory efficiency brought by LoRA. In this paper, we propose Circular Convolution Adaptation (C$^3$A), which not only achieves high-rank adaptation with enhanced performance but also excels in both computational power and memory utilization. Extensive experiments demonstrate that C$^3$A consistently outperforms LoRA and its variants across various fine-tuning tasks.

Yang Liu, Zinan Zheng, Jiashun Cheng et al.

Accurate Subseasonal-to-Seasonal (S2S) climate forecasting is pivotal for decision-making including agriculture planning and disaster preparedness but is known to be challenging due to its chaotic nature. Although recent data-driven models have shown promising results, their performance is limited by inadequate consideration of geometric inductive biases. Usually, they treat the spherical weather data as planar images, resulting in an inaccurate representation of locations and spatial relations. In this work, we propose the geometric-inspired Circular Transformer (CirT) to model the cyclic characteristic of the graticule, consisting of two key designs: (1) Decomposing the weather data by latitude into circular patches that serve as input tokens to the Transformer; (2) Leveraging Fourier transform in self-attention to capture the global information and model the spatial periodicity. Extensive experiments on the Earth Reanalysis 5 (ERA5) reanalysis dataset demonstrate our model yields a significant improvement over the advanced data-driven models, including PanguWeather and GraphCast, as well as skillful ECMWF systems. Additionally, we empirically show the effectiveness of our model designs and high-quality prediction over spatial and temporal dimensions.

Jiashun Cheng, Zinan Zheng, Yang Liu et al.

Graph Anomaly Detection (GAD) is a challenging and practical research topic where Graph Neural Networks (GNNs) have recently shown promising results. The effectiveness of existing GNNs in GAD has been mainly attributed to the simultaneous learning of node representations and the classifier in an end-to-end manner. Meanwhile, graph pre-training, the two-stage learning paradigm such as DGI and GraphMAE, has shown potential in leveraging unlabeled graph data to enhance downstream tasks, yet its impact on GAD remains under-explored. In this work, we show that graph pre-training models are strong graph anomaly detectors. Specifically, we demonstrate that pre-training is highly competitive, markedly outperforming the state-of-the-art end-to-end training models when faced with limited supervision. To understand this phenomenon, we further uncover pre-training enhances the detection of distant, under-represented, unlabeled anomalies that go beyond 2-hop neighborhoods of known anomalies, shedding light on its superior performance against end-to-end models. Moreover, we extend our examination to the potential of pre-training in graph-level anomaly detection. We envision this work to stimulate a re-evaluation of pre-training's role in GAD and offer valuable insights for future research.

Shilei Cao, Ziyang Gong, Hehai Lin et al.

In Remote Sensing (RS), Parameter-Efficient Fine-Tuning (PEFT) has emerged as a key approach to activate the generalizable representation ability of foundation models for downstream tasks. However, existing specialized PEFT methods often fail when applied to large-scale Earth observation tasks, as they are unable to fully handle the multifaceted and unpredictable domain gaps (\eg, spatial, semantic, and frequency shifts) inherent in RS data. To overcome this, we propose CrossEarth-Gate, which introduces two primary contributions. First, we establish a comprehensive RS module toolbox to address multifaceted domain gaps, comprising spatial, semantic, and frequency modules. Second, we develop a Fisher-guided adaptive selection mechanism that operates on this toolbox. This selection is guided by Fisher Information to quantify each module's importance by measuring its contribution to the task-specific gradient flow. It dynamically activates only the most critical modules at the appropriate layers, guiding the gradient flow to maximize adaptation effectiveness and efficiency. Comprehensive experiments validate the efficacy and generalizability of our method, where CrossEarth-Gate achieves state-of-the-art performance across 16 cross-domain benchmarks for RS semantic segmentation. The code of the work will be released.

Shilei Cao, Hehai Lin, Jiashun Cheng et al.

While recent advances in machine learning have equipped Weather Foundation Models (WFMs) with substantial generalization capabilities across diverse downstream tasks, the escalating computational requirements associated with their expanding scale increasingly hinder practical deployment. Current Parameter-Efficient Fine-Tuning (PEFT) methods, designed for vision or language tasks, fail to address the unique challenges of weather downstream tasks, such as variable heterogeneity, resolution diversity, and spatiotemporal coverage variations, leading to suboptimal performance when applied to WFMs. To bridge this gap, we introduce WeatherPEFT, a novel PEFT framework for WFMs incorporating two synergistic innovations. First, during the forward pass, Task-Adaptive Dynamic Prompting (TADP) dynamically injects the embedding weights within the encoder to the input tokens of the pre-trained backbone via internal and external pattern extraction, enabling context-aware feature recalibration for specific downstream tasks. Furthermore, during backpropagation, Stochastic Fisher-Guided Adaptive Selection (SFAS) not only leverages Fisher information to identify and update the most task-critical parameters, thereby preserving invariant pre-trained knowledge, but also introduces randomness to stabilize the selection. We demonstrate the effectiveness and efficiency of WeatherPEFT on three downstream tasks, where existing PEFT methods show significant gaps versus Full-Tuning, and WeatherPEFT achieves performance parity with Full-Tuning using fewer trainable parameters. The code of this work will be released.

Jiashun Cheng, Aochuan Chen, Nuo Chen et al.

Low-Rank Adaptation (LoRA) has emerged as a prominent technique for fine-tuning large foundation models. Despite its successes, the substantial parameter redundancy, which limits the capacity and efficiency of LoRA, has been recognized as a bottleneck. In this work, we systematically investigate the impact of redundancy in fine-tuning LoRA and reveal that reducing density redundancy does not degrade expressiveness. Based on this insight, we introduce \underline{S}pectral-\underline{e}ncoding \underline{L}ow-\underline{R}ank \underline{A}daptation (SeLoRA), which harnesses the robust expressiveness of spectral bases to re-parameterize LoRA from a sparse spectral subspace. Designed with simplicity, SeLoRA enables seamless integration with various LoRA variants for performance boosting, serving as a scalable plug-and-play framework. Extensive experiments substantiate that SeLoRA achieves greater efficiency with fewer parameters, delivering superior performance enhancements over strong baselines on various downstream tasks, including commonsense reasoning, math reasoning, and code generation.

Yunhui Liu, Jiashun Cheng, Yiqing Lin et al.

Graph anomaly detection (GAD) has garnered increasing attention in recent years, yet remains challenging due to two key factors: (1) label scarcity stemming from the high cost of annotations and (2) homophily disparity at node and class levels. In this paper, we introduce Anomaly-Aware Pre-Training and Fine-Tuning (APF), a targeted and effective framework to mitigate the above challenges in GAD. In the pre-training stage, APF incorporates node-specific subgraphs selected via the Rayleigh Quotient, a label-free anomaly metric, into the learning objective to enhance anomaly awareness. It further introduces two learnable spectral polynomial filters to jointly learn dual representations that capture both general semantics and subtle anomaly cues. During fine-tuning, a gated fusion mechanism adaptively integrates pre-trained representations across nodes and dimensions, while an anomaly-aware regularization loss encourages abnormal nodes to preserve more anomaly-relevant information. Furthermore, we theoretically show that APF tends to achieve linear separability under mild conditions. Comprehensive experiments on 10 benchmark datasets validate the superior performance of APF in comparison to state-of-the-art baselines.