CVApr 24Code
CheXmix: Unified Generative Pretraining for Vision Language Models in Medical ImagingAshwin Kumar, Robbie Holland, Corey Barrett et al.
Recent medical multimodal foundation models are built as multimodal LLMs (MLLMs) by connecting a CLIP-pretrained vision encoder to an LLM using LLaVA-style finetuning. This two-stage, decoupled approach introduces a projection layer that can distort visual features. This is especially concerning in medical imaging where subtle cues are essential for accurate diagnoses. In contrast, early-fusion generative approaches such as Chameleon eliminate the projection bottleneck by processing image and text tokens within a single unified sequence, enabling joint representation learning that leverages the inductive priors of language models. We present CheXmix, a unified early-fusion generative model trained on a large corpus of chest X-rays paired with radiology reports. We expand on Chameleon's autoregressive framework by introducing a two-stage multimodal generative pretraining strategy that combines the representational strengths of masked autoencoders with MLLMs. The resulting models are highly flexible, supporting both discriminative and generative tasks at both coarse and fine-grained scales. Our approach outperforms well-established generative models across all masking ratios by 6.0% and surpasses CheXagent by 8.6% on AUROC at high image masking ratios on the CheXpert classification task. We further inpaint images over 51.0% better than text-only generative models and outperform CheXagent by 45% on the GREEN metric for radiology report generation. These results demonstrate that CheXmix captures fine-grained information across a broad spectrum of chest X-ray tasks. Our code is at: https://github.com/StanfordMIMI/CheXmix.
CLMar 8, 2024Code
A dataset and benchmark for hospital course summarization with adapted large language modelsAsad Aali, Dave Van Veen, Yamin Ishraq Arefeen et al.
Brief hospital course (BHC) summaries are clinical documents that summarize a patient's hospital stay. While large language models (LLMs) depict remarkable capabilities in automating real-world tasks, their capabilities for healthcare applications such as synthesizing BHCs from clinical notes have not been shown. We introduce a novel pre-processed dataset, the MIMIC-IV-BHC, encapsulating clinical note and brief hospital course (BHC) pairs to adapt LLMs for BHC synthesis. Furthermore, we introduce a benchmark of the summarization performance of two general-purpose LLMs and three healthcare-adapted LLMs. Using clinical notes as input, we apply prompting-based (using in-context learning) and fine-tuning-based adaptation strategies to three open-source LLMs (Clinical-T5-Large, Llama2-13B, FLAN-UL2) and two proprietary LLMs (GPT-3.5, GPT-4). We evaluate these LLMs across multiple context-length inputs using natural language similarity metrics. We further conduct a clinical study with five clinicians, comparing clinician-written and LLM-generated BHCs across 30 samples, focusing on their potential to enhance clinical decision-making through improved summary quality. We observe that the Llama2-13B fine-tuned LLM outperforms other domain-adapted models given quantitative evaluation metrics of BLEU and BERT-Score. GPT-4 with in-context learning shows more robustness to increasing context lengths of clinical note inputs than fine-tuned Llama2-13B. Despite comparable quantitative metrics, the reader study depicts a significant preference for summaries generated by GPT-4 with in-context learning compared to both Llama2-13B fine-tuned summaries and the original summaries, highlighting the need for qualitative clinical evaluation.
LGApr 4
Delayed Homomorphic Reinforcement Learning for Environments with Delayed FeedbackJongsoo Lee, Jangwon Kim, Soohee Han
Reinforcement learning in real-world systems is often accompanied by delayed feedback, which breaks the Markov assumption and impedes both learning and control. Canonical state augmentation approaches cause the state-space explosion, which introduces a severe sample-complexity burden. Despite recent progress, the state-of-the-art augmentation-based baselines remain incomplete: they either predominantly reduce the burden on the critic or adopt non-unified treatments for the actor and critic. To provide a structured and sample-efficient solution, we propose delayed homomorphic reinforcement learning (DHRL), a framework grounded in MDP homomorphisms that collapses belief-equivalent augmented states and enables efficient policy learning on the resulting abstract MDP without loss of optimality. We provide theoretical analyses of state-space compression bounds and sample complexity, and introduce a practical algorithm. Experiments on continuous control tasks in MuJoCo benchmark confirm that our algorithm outperforms strong augmentation-based baselines, particularly under long delays.
CLSep 26, 2025
Optimizing Long-Form Clinical Text Generation with Claim-Based RewardsSamyak Jhaveri, Praphul Singh, Jangwon Kim et al.
Automating clinical documentation with large language models requires precise alignment with priorities such as completeness and factual grounding. We present an evaluation-integrated reinforcement learning framework for long-form clinical text generation that couples Group Relative Policy Optimization (GRPO) with DocLens, a claim-level evaluator that provides deterministic, dialogue-grounded rewards. Our method directly optimizes factual grounding and completeness without training a separate reward model or relying on human-authored references. Empirically, the approach improves clinical note quality and reduces training cost via a simple reward-gating strategy. An independent GPT-5 qualitative evaluation further supports these gains, showing higher preference for GRPO outputs in factuality, completeness, and brevity, with fewer omissions and hallucinations. Because the benchmarks are relatively clean and the base model already well aligned, these improvements likely represent a conservative lower bound. The framework is scalable to real-world settings and can incorporate custom objectives such as guideline adherence or billing preferences.
MASep 24, 2025
RadAgents: Multimodal Agentic Reasoning for Chest X-ray Interpretation with Radiologist-like WorkflowsKai Zhang, Corey D Barrett, Jangwon Kim et al.
Agentic systems offer a potential path to solve complex clinical tasks through collaboration among specialized agents, augmented by tool use and external knowledge bases. Nevertheless, for chest X-ray (CXR) interpretation, prevailing methods remain limited: (i) reasoning is frequently neither clinically interpretable nor aligned with guidelines, reflecting mere aggregation of tool outputs; (ii) multimodal evidence is insufficiently fused, yielding text-only rationales that are not visually grounded; and (iii) systems rarely detect or resolve cross-tool inconsistencies and provide no principled verification mechanisms. To bridge the above gaps, we present RadAgents, a multi-agent framework for CXR interpretation that couples clinical priors with task-aware multimodal reasoning. In addition, we integrate grounding and multimodal retrieval-augmentation to verify and resolve context conflicts, resulting in outputs that are more reliable, transparent, and consistent with clinical practice.
LGJul 25, 2025
Reinforcement Learning via Conservative Agent for Environments with Random DelaysJongsoo Lee, Jangwon Kim, Jiseok Jeong et al.
Real-world reinforcement learning applications are often hindered by delayed feedback from environments, which violates the Markov assumption and introduces significant challenges. Although numerous delay-compensating methods have been proposed for environments with constant delays, environments with random delays remain largely unexplored due to their inherent variability and unpredictability. In this study, we propose a simple yet robust agent for decision-making under random delays, termed the conservative agent, which reformulates the random-delay environment into its constant-delay equivalent. This transformation enables any state-of-the-art constant-delay method to be directly extended to the random-delay environments without modifying the algorithmic structure or sacrificing performance. We evaluate the conservative agent-based algorithm on continuous control tasks, and empirical results demonstrate that it significantly outperforms existing baseline algorithms in terms of asymptotic performance and sample efficiency.
AIMay 23, 2025
RedactOR: An LLM-Powered Framework for Automatic Clinical Data De-IdentificationPraphul Singh, Charlotte Dzialo, Jangwon Kim et al.
Ensuring clinical data privacy while preserving utility is critical for AI-driven healthcare and data analytics. Existing de-identification (De-ID) methods, including rule-based techniques, deep learning models, and large language models (LLMs), often suffer from recall errors, limited generalization, and inefficiencies, limiting their real-world applicability. We propose a fully automated, multi-modal framework, RedactOR for de-identifying structured and unstructured electronic health records, including clinical audio records. Our framework employs cost-efficient De-ID strategies, including intelligent routing, hybrid rule and LLM based approaches, and a two-step audio redaction approach. We present a retrieval-based entity relexicalization approach to ensure consistent substitutions of protected entities, thereby enhancing data coherence for downstream applications. We discuss key design desiderata, de-identification and relexicalization methodology, and modular architecture of RedactOR and its integration with the Oracle Health Clinical AI system. Evaluated on the i2b2 2014 De-ID dataset using standard metrics with strict recall, our approach achieves competitive performance while optimizing token usage to reduce LLM costs. Finally, we discuss key lessons and insights from deployment in real-world AI- driven healthcare data pipelines.