Sunghwan Sohn

Chandreen Liyanage, Muskan Garg, Vijay Mago et al.

Amid ongoing health crisis, there is a growing necessity to discern possible signs of Wellness Dimensions (WD) manifested in self-narrated text. As the distribution of WD on social media data is intrinsically imbalanced, we experiment the generative NLP models for data augmentation to enable further improvement in the pre-screening task of classifying WD. To this end, we propose a simple yet effective data augmentation approach through prompt-based Generative NLP models, and evaluate the ROUGE scores and syntactic/semantic similarity among existing interpretations and augmented data. Our approach with ChatGPT model surpasses all the other methods and achieves improvement over baselines such as Easy-Data Augmentation and Backtranslation. Introducing data augmentation to generate more training samples and balanced dataset, results in the improved F-score and the Matthew's Correlation Coefficient for upto 13.11% and 15.95%, respectively.

Muskan Garg, Manas Gaur, Raxit Goswami et al.

Low self-esteem and interpersonal needs (i.e., thwarted belongingness (TB) and perceived burdensomeness (PB)) have a major impact on depression and suicide attempts. Individuals seek social connectedness on social media to boost and alleviate their loneliness. Social media platforms allow people to express their thoughts, experiences, beliefs, and emotions. Prior studies on mental health from social media have focused on symptoms, causes, and disorders. Whereas an initial screening of social media content for interpersonal risk factors and low self-esteem may raise early alerts and assign therapists to at-risk users of mental disturbance. Standardized scales measure self-esteem and interpersonal needs from questions created using psychological theories. In the current research, we introduce a psychology-grounded and expertly annotated dataset, LoST: Low Self esTeem, to study and detect low self-esteem on Reddit. Through an annotation approach involving checks on coherence, correctness, consistency, and reliability, we ensure gold-standard for supervised learning. We present results from different deep language models tested using two data augmentation techniques. Our findings suggest developing a class of language models that infuses psychological and clinical knowledge.

MSVPJ Sathvik, Surjodeep Sarkar, Chandni Saxena et al.

Mental health professionals and clinicians have observed the upsurge of mental disorders due to Interpersonal Risk Factors (IRFs). To simulate the human-in-the-loop triaging scenario for early detection of mental health disorders, we recognized textual indications to ascertain these IRFs : Thwarted Belongingness (TBe) and Perceived Burdensomeness (PBu) within personal narratives. In light of this, we use N-shot learning with GPT-3 model on the IRF dataset, and underscored the importance of fine-tuning GPT-3 model to incorporate the context-specific sensitivity and the interconnectedness of textual cues that represent both IRFs. In this paper, we introduce an Interpretable Prompting (InterPrompt)} method to boost the attention mechanism by fine-tuning the GPT-3 model. This allows a more sophisticated level of language modification by adjusting the pre-trained weights. Our model learns to detect usual patterns and underlying connections across both the IRFs, which leads to better system-level explainability and trustworthiness. The results of our research demonstrate that all four variants of GPT-3 model, when fine-tuned with InterPrompt, perform considerably better as compared to the baseline methods, both in terms of classification and explanation generation.

Muskan Garg, Shaina Raza, Shebuti Rayana et al.

Despite substantial progress in healthcare applications driven by large language models (LLMs), growing concerns around data privacy, and limited resources; the small language models (SLMs) offer a scalable and clinically viable solution for efficient performance in resource-constrained environments for next-generation healthcare informatics. Our comprehensive survey presents a taxonomic framework to identify and categorize them for healthcare professionals and informaticians. The timeline of healthcare SLM contributions establishes a foundational framework for analyzing models across three dimensions: NLP tasks, stakeholder roles, and the continuum of care. We present a taxonomic framework to identify the architectural foundations for building models from scratch; adapting SLMs to clinical precision through prompting, instruction fine-tuning, and reasoning; and accessibility and sustainability through compression techniques. Our primary objective is to offer a comprehensive survey for healthcare professionals, introducing recent innovations in model optimization and equipping them with curated resources to support future research and development in the field. Aiming to showcase the groundbreaking advancements in SLMs for healthcare, we present a comprehensive compilation of experimental results across widely studied NLP tasks in healthcare to highlight the transformative potential of SLMs in healthcare. The updated repository is available at Github

Muskan Garg, MSVPJ Sathvik, Amrit Chadha et al.

The social NLP research community witness a recent surge in the computational advancements of mental health analysis to build responsible AI models for a complex interplay between language use and self-perception. Such responsible AI models aid in quantifying the psychological concepts from user-penned texts on social media. On thinking beyond the low-level (classification) task, we advance the existing binary classification dataset, towards a higher-level task of reliability analysis through the lens of explanations, posing it as one of the safety measures. We annotate the LoST dataset to capture nuanced textual cues that suggest the presence of low self-esteem in the posts of Reddit users. We further state that the NLP models developed for determining the presence of low self-esteem, focus more on three types of textual cues: (i) Trigger: words that triggers mental disturbance, (ii) LoST indicators: text indicators emphasizing low self-esteem, and (iii) Consequences: words describing the consequences of mental disturbance. We implement existing classifiers to examine the attention mechanism in pre-trained language models (PLMs) for a domain-specific psychology-grounded task. Our findings suggest the need of shifting the focus of PLMs from Trigger and Consequences to a more comprehensive explanation, emphasizing LoST indicators while determining low self-esteem in Reddit posts.

Kelli Henry, Steven Xu, Kaitlin Blotske et al.

Purpose: Large language models (LLMs) have proven performance for certain diagnostic tasks, however limited studies have evaluated their consistency in recommending appropriate medication regimens for a given diagnosis. Medication management is a complex task that requires synthesis of drug formulation and complete order instructions for safe use. Here, the performance of GPT 4o, an LLM available with ChatGPT, was tested for three medication management tasks. Methods: GPT-4o performance was tested using three medication tasks: identifying available formulations for a given generic drug name, identifying drug-drug interactions (DDI) for a given medication regimen, and preparing a medication order for a given generic drug name. For each experiment, the models raw text response was captured exactly as returned and evaluated using clinician evaluation in addition to standard LLM metrics, including Term Frequency-Inverse Document Frequency (TF IDF) vectors, normalized Levenshtein similarity, and Recall-Oriented Understudy for Gisting Evaluation (ROUGE 1/ROUGE L F1) between each response and its reference string. Results: For the first task of drug-formulation matching, GPT-4o had 49% accuracy for generic medications being matched to all available formulations, with an average of 1.23 omissions per medication and 1.14 hallucinations per medication. For the second task of drug-drug interaction identification, the accuracy was 54.7% for identifying the DDI pair. For the third task, GPT-4o generated order sentences containing no medication or abbreviation errors in 65.8% of cases. Conclusions: Model performance for basic medication tasks was consistently poor. This evaluation highlights the need for domain-specific training through clinician-annotated datasets and a comprehensive evaluation framework for benchmarking performance.

Sunyang Fu, David Chen, Huan He et al.

Background Concept extraction, a subdomain of natural language processing (NLP) with a focus on extracting concepts of interest, has been adopted to computationally extract clinical information from text for a wide range of applications ranging from clinical decision support to care quality improvement. Objectives In this literature review, we provide a methodology review of clinical concept extraction, aiming to catalog development processes, available methods and tools, and specific considerations when developing clinical concept extraction applications. Methods Based on the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines, a literature search was conducted for retrieving EHR-based information extraction articles written in English and published from January 2009 through June 2019 from Ovid MEDLINE In-Process & Other Non-Indexed Citations, Ovid MEDLINE, Ovid EMBASE, Scopus, Web of Science, and the ACM Digital Library. Results A total of 6,686 publications were retrieved. After title and abstract screening, 228 publications were selected. The methods used for developing clinical concept extraction applications were discussed in this review.

Yanshan Wang, Sunghwan Sohn, Sijia Liu et al.

Objective: To automatically create large labeled training datasets and reduce the efforts of feature engineering for training accurate machine learning models for clinical information extraction. Materials and Methods: We propose a distant supervision paradigm empowered by deep representation for extracting information from clinical text. In this paradigm, the rule-based NLP algorithms are utilized to generate weak labels and create large training datasets automatically. Additionally, we use pre-trained word embeddings as deep representation to eliminate the need of task-specific feature engineering for machine learning. We evaluated the effectiveness of the proposed paradigm on two clinical information extraction tasks: smoking status extraction and proximal femur (hip) fracture extraction. We tested three prevalent machine learning models, namely, Convolutional Neural Networks (CNN), Support Vector Machine (SVM), and Random Forrest (RF). Results: The results indicate that CNN is the best fit to the proposed distant supervision paradigm. It outperforms the rule-based NLP algorithms given large datasets by capturing additional extraction patterns. We also verified the advantage of word embedding feature representation in the paradigm over term frequency-inverse document frequency (tf-idf) and topic modeling representations. Discussion: In the clinical domain, the limited amount of labeled data is always a bottleneck for applying machine learning. Additionally, the performance of machine learning approaches highly depends on task-specific feature engineering. The proposed paradigm could alleviate those problems by leveraging rule-based NLP algorithms to automatically assign weak labels and eliminating the need of task-specific feature engineering using word embedding feature representation.

Feichen Shen, David W Larson, James M. Naessens et al.

Postsurgical complications (PSCs) are known as a deviation from the normal postsurgical course and categorized by severity and treatment requirements. Surgical site infection (SSI) is one of major PSCs and the most common healthcare-associated infection, resulting in increased length of hospital stay and cost. In this work, we assessed an automated way to generate lexicon (i.e., keyword features) from clinical narratives using sublanguage analysis with heuristics to detect SSI and evaluated these keywords with medical experts. To further validate our approach, we also conducted decision tree algorithm on cohort using automatically generated keywords. The results show that our framework was able to identify SSI keywords from clinical narratives and to support search-based natural language processing (NLP) approaches by augmenting search queries.