Jing Yuan

LG
h-index50
58papers
1,233citations
Novelty52%
AI Score56

58 Papers

AIJul 17, 2023
TableGPT: Towards Unifying Tables, Nature Language and Commands into One GPT

Liangyu Zha, Junlin Zhou, Liyao Li et al.

Tables are prevalent in real-world databases, requiring significant time and effort for humans to analyze and manipulate. The advancements in large language models (LLMs) have made it possible to interact with tables using natural language input, bringing this capability closer to reality. In this paper, we present TableGPT, a unified fine-tuned framework that enables LLMs to understand and operate on tables using external functional commands. It introduces the capability to seamlessly interact with tables, enabling a wide range of functionalities such as question answering, data manipulation (e.g., insert, delete, query, and modify operations), data visualization, analysis report generation, and automated prediction. TableGPT aims to provide convenience and accessibility to users by empowering them to effortlessly leverage tabular data. At the core of TableGPT lies the novel concept of global tabular representations, which empowers LLMs to gain a comprehensive understanding of the entire table beyond meta-information. By jointly training LLMs on both table and text modalities, TableGPT achieves a deep understanding of tabular data and the ability to perform complex operations on tables through chain-of-command instructions. Importantly, TableGPT offers the advantage of being a self-contained system rather than relying on external API interfaces. Moreover, it supports efficient data process flow, query rejection (when appropriate) and private deployment, enabling faster domain data fine-tuning and ensuring data privacy, which enhances the framework's adaptability to specific use cases.

IVSep 19, 2022
Magnetic Resonance Fingerprinting with compressed sensing and distance metric learning

Zhe Wang, Hongsheng Li, Qinwei Zhang et al.

Magnetic Resonance Fingerprinting (MRF) is a novel technique that simultaneously estimates multiple tissue-related parameters, such as the longitudinal relaxation time T1, the transverse relaxation time T2, off resonance frequency B0 and proton density, from a scanned object in just tens of seconds. However, the MRF method suffers from aliasing artifacts because it significantly undersamples the k-space data. In this work, we propose a compressed sensing (CS) framework for simultaneously estimating multiple tissue-related parameters based on the MRF method. It is more robust to low sampling ratio and is therefore more efficient in estimating MR parameters for all voxels of an object. Furthermore, the MRF method requires identifying the nearest atoms of the query fingerprints from the MR-signal-evolution dictionary with the L2 distance. However, we observed that the L2 distance is not always a proper metric to measure the similarities between MR Fingerprints. Adaptively learning a distance metric from the undersampled training data can significantly improve the matching accuracy of the query fingerprints. Numerical results on extensive simulated cases show that our method substantially outperforms stateof-the-art methods in terms of accuracy of parameter estimation.

LGApr 13, 2023
Beyond Submodularity: A Unified Framework of Randomized Set Selection with Group Fairness Constraints

Shaojie Tang, Jing Yuan

Machine learning algorithms play an important role in a variety of important decision-making processes, including targeted advertisement displays, home loan approvals, and criminal behavior predictions. Given the far-reaching impact of these algorithms, it is crucial that they operate fairly, free from bias or prejudice towards certain groups in the population. Ensuring impartiality in these algorithms is essential for promoting equality and avoiding discrimination. To this end we introduce a unified framework for randomized subset selection that incorporates group fairness constraints. Our problem involves a global utility function and a set of group utility functions for each group, here a group refers to a group of individuals (e.g., people) sharing the same attributes (e.g., gender). Our aim is to generate a distribution across feasible subsets, specifying the selection probability of each feasible set, to maximize the global utility function while meeting a predetermined quota for each group utility function in expectation. Note that there may not necessarily be any direct connections between the global utility function and each group utility function. We demonstrate that this framework unifies and generalizes many significant applications in machine learning and operations research. Our algorithmic results either improves the best known result or provide the first approximation algorithms for new applications.

LGDec 23, 2025Code
TableGPT-R1: Advancing Tabular Reasoning Through Reinforcement Learning

Saisai Yang, Qingyi Huang, Jing Yuan et al.

Tabular data serves as the backbone of modern data analysis and scientific research. While Large Language Models (LLMs) fine-tuned via Supervised Fine-Tuning (SFT) have significantly improved natural language interaction with such structured data, they often fall short in handling the complex, multi-step reasoning and robust code execution required for real-world table tasks. Reinforcement Learning (RL) offers a promising avenue to enhance these capabilities, yet its application in the tabular domain faces three critical hurdles: the scarcity of high-quality agentic trajectories with closed-loop code execution and environment feedback on diverse table structures, the extreme heterogeneity of feedback signals ranging from rigid SQL execution to open-ended data interpretation, and the risk of catastrophic forgetting of general knowledge during vertical specialization. To overcome these challenges and unlock advanced reasoning on complex tables, we introduce \textbf{TableGPT-R1}, a specialized tabular model built on a systematic RL framework. Our approach integrates a comprehensive data engineering pipeline that synthesizes difficulty-stratified agentic trajectories for both supervised alignment and RL rollouts, a task-adaptive reward system that combines rule-based verification with a criteria-injected reward model and incorporates process-level step reward shaping with behavioral regularization, and a multi-stage training framework that progressively stabilizes reasoning before specializing in table-specific tasks. Extensive evaluations demonstrate that TableGPT-R1 achieves state-of-the-art performance on authoritative benchmarks, significantly outperforming baseline models while retaining robust general capabilities. Our model is available at https://huggingface.co/tablegpt/TableGPT-R1.

LGFeb 3, 2023
Group Fairness in Non-monotone Submodular Maximization

Jing Yuan, Shaojie Tang

Maximizing a submodular function has a wide range of applications in machine learning and data mining. One such application is data summarization whose goal is to select a small set of representative and diverse data items from a large dataset. However, data items might have sensitive attributes such as race or gender, in this setting, it is important to design \emph{fairness-aware} algorithms to mitigate potential algorithmic bias that may cause over- or under- representation of particular groups. Motivated by that, we propose and study the classic non-monotone submodular maximization problem subject to novel group fairness constraints. Our goal is to select a set of items that maximizes a non-monotone submodular function, while ensuring that the number of selected items from each group is proportionate to its size, to the extent specified by the decision maker. We develop the first constant-factor approximation algorithms for this problem. We also extend the basic model to incorporate an additional global size constraint on the total number of selected items.

LGJul 7, 2022
Group Equality in Adaptive Submodular Maximization

Shaojie Tang, Jing Yuan

In this paper, we study the classic submodular maximization problem subject to a group equality constraint under both non-adaptive and adaptive settings. It has been shown that the utility function of many machine learning applications, including data summarization, influence maximization in social networks, and personalized recommendation, satisfies the property of submodularity. Hence, maximizing a submodular function subject to various constraints can be found at the heart of many of those applications. On a high level, submodular maximization aims to select a group of most representative items (e.g., data points). However, the design of most existing algorithms does not incorporate the fairness constraint, leading to under- or over-representation of some particular groups. This motivates us to study the submodular maximization problem with group equality, where we aim to select a group of items to maximize a (possibly non-monotone) submodular utility function subject to a group equality constraint. To this end, we develop the first constant-factor approximation algorithm for this problem. The design of our algorithm is robust enough to be extended to solving the submodular maximization problem under a more complicated adaptive setting. Moreover, we further extend our study to incorporating a global cardinality constraint and other fairness notations.

LGJul 26, 2022
Partial-Monotone Adaptive Submodular Maximization

Shaojie Tang, Jing Yuan

Many sequential decision making problems, including pool-based active learning and adaptive viral marketing, can be formulated as an adaptive submodular maximization problem. Most of existing studies on adaptive submodular optimization focus on either monotone case or non-monotone case. Specifically, if the utility function is monotone and adaptive submodular, \cite{golovin2011adaptive} developed a greedy policy that achieves a $(1-1/e)$ approximation ratio subject to a cardinality constraint. If the utility function is non-monotone and adaptive submodular, \cite{tang2021beyond} showed that a random greedy policy achieves a $1/e$ approximation ratio subject to a cardinality constraint. In this work, we aim to generalize the above mentioned results by studying the partial-monotone adaptive submodular maximization problem. To this end, we introduce the notation of adaptive monotonicity ratio $m\in[0,1]$ to measure the degree of monotonicity of a function. Our main result is to show that a random greedy policy achieves an approximation ratio of $m(1-1/e)+(1-m)(1/e)$ if the utility function is $m$-adaptive monotone and adaptive submodular. Notably this result recovers the aforementioned $(1-1/e)$ and $1/e$ approximation ratios when $m = 0$ and $m = 1$, respectively. We further extend our results to consider a knapsack constraint. We show that a sampling-based policy achieves an approximation ratio of $(m+1)/10$ if the utility function is $m$-adaptive monotone and adaptive submodular. One important implication of our results is that even for a non-monotone utility function, we still can achieve an approximation ratio close to $(1-1/e)$ if this function is ``close'' to a monotone function. This leads to improved performance bounds for many machine learning applications whose utility functions are almost adaptive monotone.

DSApr 10, 2023
Achieving Long-term Fairness in Submodular Maximization through Randomization

Shaojie Tang, Jing Yuan, Twumasi Mensah-Boateng

Submodular function optimization has numerous applications in machine learning and data analysis, including data summarization which aims to identify a concise and diverse set of data points from a large dataset. It is important to implement fairness-aware algorithms when dealing with data items that may contain sensitive attributes like race or gender, to prevent biases that could lead to unequal representation of different groups. With this in mind, we investigate the problem of maximizing a monotone submodular function while meeting group fairness constraints. Unlike previous studies in this area, we allow for randomized solutions, with the objective being to calculate a distribution over feasible sets such that the expected number of items selected from each group is subject to constraints in the form of upper and lower thresholds, ensuring that the representation of each group remains balanced in the long term. Here a set is considered feasible if its size does not exceed a constant value of $b$. Our research includes the development of a series of approximation algorithms for this problem.

AIAug 17, 2022
Streaming Adaptive Submodular Maximization

Shaojie Tang, Jing Yuan

Many sequential decision making problems can be formulated as an adaptive submodular maximization problem. However, most of existing studies in this field focus on pool-based setting, where one can pick items in any order, and there have been few studies for the stream-based setting where items arrive in an arbitrary order and one must immediately decide whether to select an item or not upon its arrival. In this paper, we introduce a new class of utility functions, semi-policywise submodular functions. We develop a series of effective algorithms to maximize a semi-policywise submodular function under the stream-based setting.

LGAug 16, 2023
Non-monotone Sequential Submodular Maximization

Shaojie Tang, Jing Yuan

In this paper, we study a fundamental problem in submodular optimization, which is called sequential submodular maximization. Specifically, we aim to select and rank a group of $k$ items from a ground set $V$ such that the weighted summation of $k$ (possibly non-monotone) submodular functions $f_1, \cdots ,f_k: 2^V \rightarrow \mathbb{R}^+$ is maximized, here each function $f_j$ takes the first $j$ items from this sequence as input. The existing research on sequential submodular maximization has predominantly concentrated on the monotone setting, assuming that the submodular functions are non-decreasing. However, in various real-world scenarios, like diversity-aware recommendation systems, adding items to an existing set might negatively impact the overall utility. In response, this paper pioneers the examination of the aforementioned problem with non-monotone submodular functions and offers effective solutions for both flexible and fixed length constraints, as well as a special case with identical utility functions. The empirical evaluations further validate the effectiveness of our proposed algorithms in the domain of video recommendations. The results of this research have implications in various fields, including recommendation systems and assortment optimization, where the ordering of items significantly impacts the overall value obtained.

CVNov 21, 2022
Towards Automated Polyp Segmentation Using Weakly- and Semi-Supervised Learning and Deformable Transformers

Guangyu Ren, Michalis Lazarou, Jing Yuan et al.

Polyp segmentation is a crucial step towards computer-aided diagnosis of colorectal cancer. However, most of the polyp segmentation methods require pixel-wise annotated datasets. Annotated datasets are tedious and time-consuming to produce, especially for physicians who must dedicate their time to their patients. We tackle this issue by proposing a novel framework that can be trained using only weakly annotated images along with exploiting unlabeled images. To this end, we propose three ideas to address this problem, more specifically our contributions are: 1) a novel sparse foreground loss that suppresses false positives and improves weakly-supervised training, 2) a batch-wise weighted consistency loss utilizing predicted segmentation maps from identical networks trained using different initialization during semi-supervised training, 3) a deformable transformer encoder neck for feature enhancement by fusing information across levels and flexible spatial locations. Extensive experimental results demonstrate the merits of our ideas on five challenging datasets outperforming some state-of-the-art fully supervised models. Also, our framework can be utilized to fine-tune models trained on natural image segmentation datasets drastically improving their performance for polyp segmentation and impressively demonstrating superior performance to fully supervised fine-tuning.

DSOct 25, 2022
Worst-Case Adaptive Submodular Cover

Jing Yuan, Shaojie Tang

In this paper, we study the adaptive submodular cover problem under the worst-case setting. This problem generalizes many previously studied problems, namely, the pool-based active learning and the stochastic submodular set cover. The input of our problem is a set of items (e.g., medical tests) and each item has a random state (e.g., the outcome of a medical test), whose realization is initially unknown. One must select an item at a fixed cost in order to observe its realization. There is an utility function which maps a subset of items and their states to a non-negative real number. We aim to sequentially select a group of items to achieve a ``target value'' while minimizing the maximum cost across realizations (a.k.a. worst-case cost). To facilitate our study, we assume that the utility function is \emph{worst-case submodular}, a property that is commonly found in many machine learning applications. With this assumption, we develop a tight $(\log (Q/η)+1)$-approximation policy, where $Q$ is the ``target value'' and $η$ is the smallest difference between $Q$ and any achievable utility value $\hat{Q}<Q$. We also study a worst-case maximum-coverage problem, a dual problem of the minimum-cost-cover problem, whose goal is to select a group of items to maximize its worst-case utility subject to a budget constraint. To solve this problem, we develop a $(1-1/e)/2$-approximation solution.

LGMay 4, 2022
GRU-TV: Time- and velocity-aware GRU for patient representation on multivariate clinical time-series data

Ningtao Liu, Ruoxi Gao, Jing Yuan et al.

Electronic health records (EHRs) are usually highly dimensional, heterogeneous, and multimodal. Besides, the random recording of clinical variables results in high missing rates and uneven time intervals between adjacent records in the multivariate clinical time-series data extracted from EHRs. Current works using clinical time-series data for patient representation regard the patients' physiological status as a discrete process described by sporadically collected records. However, changes in the patient's physiological condition are continuous and dynamic processes. The perception of time and velocity of change is crucial for patient representation learning. In this study, we propose a time- and velocity-aware gated recurrent unit model (GRU-TV) for patient representation learning of clinical multivariate time-series data in a time-continuous manner. The neural ordinary differential equations (ODEs) and velocity perception mechanism are applied to perceive the time interval between adjacent records and changing rate of the patient's physiological status, respectively. Our experiments on two real clinical EHR datasets (PhysioNet2012, MIMIC-III) establish that GRU-TV is a robust model on computer-aided diagnosis (CAD) tasks, especially on sequences with high-variance time intervals.

CVDec 6, 2024Code
DEYOLO: Dual-Feature-Enhancement YOLO for Cross-Modality Object Detection

Yishuo Chen, Boran Wang, Xinyu Guo et al.

Object detection in poor-illumination environments is a challenging task as objects are usually not clearly visible in RGB images. As infrared images provide additional clear edge information that complements RGB images, fusing RGB and infrared images has potential to enhance the detection ability in poor-illumination environments. However, existing works involving both visible and infrared images only focus on image fusion, instead of object detection. Moreover, they directly fuse the two kinds of image modalities, which ignores the mutual interference between them. To fuse the two modalities to maximize the advantages of cross-modality, we design a dual-enhancement-based cross-modality object detection network DEYOLO, in which semantic-spatial cross modality and novel bi-directional decoupled focus modules are designed to achieve the detection-centered mutual enhancement of RGB-infrared (RGB-IR). Specifically, a dual semantic enhancing channel weight assignment module (DECA) and a dual spatial enhancing pixel weight assignment module (DEPA) are firstly proposed to aggregate cross-modality information in the feature space to improve the feature representation ability, such that feature fusion can aim at the object detection task. Meanwhile, a dual-enhancement mechanism, including enhancements for two-modality fusion and single modality, is designed in both DECAand DEPAto reduce interference between the two kinds of image modalities. Then, a novel bi-directional decoupled focus is developed to enlarge the receptive field of the backbone network in different directions, which improves the representation quality of DEYOLO. Extensive experiments on M3FD and LLVIP show that our approach outperforms SOTA object detection algorithms by a clear margin. Our code is available at https://github.com/chips96/DEYOLO.

LGJan 29
Learning to Optimize Job Shop Scheduling Under Structural Uncertainty

Rui Zhang, Jianwei Niu, Xuefeng Liu et al.

The Job-Shop Scheduling Problem (JSSP), under various forms of manufacturing uncertainty, has recently attracted considerable research attention. Most existing studies focus on parameter uncertainty, such as variable processing times, and typically adopt the actor-critic framework. In this paper, we explore a different but prevalent form of uncertainty in JSSP: structural uncertainty. Structural uncertainty arises when a job may follow one of several routing paths, and the selection is determined not by policy, but by situational factors (e.g., the quality of intermediate products) that cannot be known in advance. Existing methods struggle to address this challenge due to incorrect credit assignment: a high-quality action may be unfairly penalized if it is followed by a time-consuming path. To address this problem, we propose a novel method named UP-AAC. In contrast to conventional actor-critic methods, UP-AAC employs an asymmetric architecture. While its actor receives a standard stochastic state, the critic is crucially provided with a deterministic state reconstructed in hindsight. This design allows the critic to learn a more accurate value function, which in turn provides a lower-variance policy gradient to the actor, leading to more stable learning. In addition, we design an attention-based Uncertainty Perception Model (UPM) to enhance the actor's scheduling decisions. Extensive experiments demonstrate that our method outperforms existing approaches in reducing makespan on benchmark instances.

CVAug 24, 2024
Mean Height Aided Post-Processing for Pedestrian Detection

Jing Yuan, Tania Stathaki, Guangyu Ren

The design of pedestrian detectors seldom considers the unique characteristics of this task and usually follows the common strategies for general object detection. To explore the potential of these characteristics, we take the perspective effect in pedestrian datasets as an example and propose the mean height aided suppression for post-processing. This method rejects predictions that fall at levels with a low possibility of containing any pedestrians or that have an abnormal height compared to the average. To achieve this, the existence score and mean height generators are proposed. Comprehensive experiments on various datasets and detectors are performed; the choice of hyper-parameters is discussed in depth. The proposed method is easy to implement and is plug-and-play. Results show that the proposed methods significantly improve detection accuracy when applied to different existing pedestrian detectors and datasets. The combination of mean height aided suppression with particular detectors outperforms state-of-the-art pedestrian detectors on Caltech and Citypersons datasets.

LGSep 9, 2024
Learning Submodular Sequencing from Samples

Jing Yuan, Shaojie Tang

This paper addresses the problem of sequential submodular maximization: selecting and ranking items in a sequence to optimize some composite submodular function. In contrast to most of the previous works, which assume access to the utility function, we assume that we are given only a set of samples. Each sample includes a random sequence of items and its associated utility. We present an algorithm that, given polynomially many samples drawn from a two-stage uniform distribution, achieves an approximation ratio dependent on the curvature of individual submodular functions. Our results apply in a wide variety of real-world scenarios, such as ranking products in online retail platforms, where complete knowledge of the utility function is often impossible to obtain. Our algorithm gives an empirically useful solution in such contexts, thus proving that limited data can be of great use in sequencing tasks. From a technical perspective, our results extend prior work on ``optimization from samples'' by generalizing from optimizing a set function to a sequence-dependent function.

LGSep 5, 2024
The Power of Second Chance: Personalized Submodular Maximization with Two Candidates

Jing Yuan, Shaojie Tang

Most of existing studies on submodular maximization focus on selecting a subset of items that maximizes a \emph{single} submodular function. However, in many real-world scenarios, we might have multiple user-specific functions, each of which models the utility of a particular type of user. In these settings, our goal would be to choose a set of items that performs well across all the user-specific functions. One way to tackle this problem is to select a single subset that maximizes the sum of all of the user-specific functions. Although this aggregate approach is efficient in the sense that it avoids computation of sets for individual functions, it really misses the power of personalization - for it does not allow to choose different sets for different functions. In this paper, we introduce the problem of personalized submodular maximization with two candidate solutions. For any two candidate solutions, the utility of each user-specific function is defined as the better of these two candidates. Our objective is, therefore, to select the best set of two candidates that maximize the sum of utilities of all the user-specific functions. We have designed effective algorithms for this problem. We also discuss how our approach generalizes to multiple candidate solutions, increasing flexibility and personalization in our solution.

13.2LGMar 30
Detecting low left ventricular ejection fraction from ECG using an interpretable and scalable predictor-driven framework

Ya Zhou, Tianxiang Hao, Ziyi Cai et al.

Low left ventricular ejection fraction (LEF) frequently remains undetected until progression to symptomatic heart failure, underscoring the need for scalable screening strategies. Although artificial intelligence-enabled electrocardiography (AI-ECG) has shown promise, existing approaches rely solely on end-to-end black-box models with limited interpretability or on tabular systems dependent on commercial ECG measurement algorithms with suboptimal performance. We introduced ECG-based Predictor-Driven LEF (ECGPD-LEF), a structured framework that integrates foundation model-derived diagnostic probabilities with interpretable modeling for detecting LEF from ECG. Trained on the benchmark EchoNext dataset comprising 72,475 ECG-echocardiogram pairs and evaluated in predefined independent internal (n=5,442) and external (n=16,017) cohorts, our framework achieved robust discrimination for moderate LEF (internal AUROC 88.4%, F1 64.5%; external AUROC 86.8%, F1 53.6%), consistently outperforming the official end-to-end baseline provided with the benchmark across demographic and clinical subgroups. Interpretability analyses identified high-impact predictors, including normal ECG, incomplete left bundle branch block, and subendocardial injury in anterolateral leads, driving LEF risk estimation. Notably, these predictors independently enabled zero-shot-like inference without task-specific retraining (internal AUROC 75.3-81.0%; external AUROC 71.6-78.6%), indicating that ventricular dysfunction is intrinsically encoded within structured diagnostic probability representations. This framework reconciles predictive performance with mechanistic transparency, supporting scalable enhancement through additional predictors and seamless integration with existing AI-ECG systems.

RONov 1, 2020Code
MRPB 1.0: A Unified Benchmark for the Evaluation of Mobile Robot Local Planning Approaches

Jian Wen, Xuebo Zhang, Qingchen Bi et al.

Local planning is one of the key technologies for mobile robots to achieve full autonomy and has been widely investigated. To evaluate mobile robot local planning approaches in a unified and comprehensive way, a mobile robot local planning benchmark called MRPB 1.0 is newly proposed in this paper. The benchmark facilitates both motion planning researchers who want to compare the performance of a new local planner relative to many other state-of-the-art approaches as well as end users in the mobile robotics industry who want to select a local planner that performs best on some problems of interest. We elaborately design various simulation scenarios to challenge the applicability of local planners, including large-scale, partially unknown, and dynamic complex environments. Furthermore, three types of principled evaluation metrics are carefully designed to quantitatively evaluate the performance of local planners, wherein the safety, efficiency, and smoothness of motions are comprehensively considered. We present the application of the proposed benchmark in two popular open-source local planners to show the practicality of the benchmark. In addition, some insights and guidelines about the design and selection of local planners are also provided. The benchmark website contains all data of the designed simulation scenarios, detailed descriptions of these scenarios, and example code.

CVApr 9, 2018Code
HyperDense-Net: A hyper-densely connected CNN for multi-modal image segmentation

Jose Dolz, Karthik Gopinath, Jing Yuan et al.

Recently, dense connections have attracted substantial attention in computer vision because they facilitate gradient flow and implicit deep supervision during training. Particularly, DenseNet, which connects each layer to every other layer in a feed-forward fashion, has shown impressive performances in natural image classification tasks. We propose HyperDenseNet, a 3D fully convolutional neural network that extends the definition of dense connectivity to multi-modal segmentation problems. Each imaging modality has a path, and dense connections occur not only between the pairs of layers within the same path, but also between those across different paths. This contrasts with the existing multi-modal CNN approaches, in which modeling several modalities relies entirely on a single joint layer (or level of abstraction) for fusion, typically either at the input or at the output of the network. Therefore, the proposed network has total freedom to learn more complex combinations between the modalities, within and in-between all the levels of abstraction, which increases significantly the learning representation. We report extensive evaluations over two different and highly competitive multi-modal brain tissue segmentation challenges, iSEG 2017 and MRBrainS 2013, with the former focusing on 6-month infant data and the latter on adult images. HyperDenseNet yielded significant improvements over many state-of-the-art segmentation networks, ranking at the top on both benchmarks. We further provide a comprehensive experimental analysis of features re-use, which confirms the importance of hyper-dense connections in multi-modal representation learning. Our code is publicly available at https://www.github.com/josedolz/HyperDenseNet.

CVAug 24, 2024
Size Aware Cross-shape Scribble Supervision for Medical Image Segmentation

Jing Yuan, Tania Stathaki

Scribble supervision, a common form of weakly supervised learning, involves annotating pixels using hand-drawn curve lines, which helps reduce the cost of manual labelling. This technique has been widely used in medical image segmentation tasks to fasten network training. However, scribble supervision has limitations in terms of annotation consistency across samples and the availability of comprehensive groundtruth information. Additionally, it often grapples with the challenge of accommodating varying scale targets, particularly in the context of medical images. In this paper, we propose three novel methods to overcome these challenges, namely, 1) the cross-shape scribble annotation method; 2) the pseudo mask method based on cross shapes; and 3) the size-aware multi-branch method. The parameter and structure design are investigated in depth. Experimental results show that the proposed methods have achieved significant improvement in mDice scores across multiple polyp datasets. Notably, the combination of these methods outperforms the performance of state-of-the-art scribble supervision methods designed for medical image segmentation.

LGNov 4, 2024
TableGPT2: A Large Multimodal Model with Tabular Data Integration

Aofeng Su, Aowen Wang, Chao Ye et al.

The emergence of models like GPTs, Claude, LLaMA, and Qwen has reshaped AI applications, presenting vast new opportunities across industries. Yet, the integration of tabular data remains notably underdeveloped, despite its foundational role in numerous real-world domains. This gap is critical for three main reasons. First, database or data warehouse data integration is essential for advanced applications; second, the vast and largely untapped resource of tabular data offers immense potential for analysis; and third, the business intelligence domain specifically demands adaptable, precise solutions that many current LLMs may struggle to provide. In response, we introduce TableGPT2, a model rigorously pre-trained and fine-tuned with over 593.8K tables and 2.36M high-quality query-table-output tuples, a scale of table-related data unprecedented in prior research. This extensive training enables TableGPT2 to excel in table-centric tasks while maintaining strong general language and coding abilities. One of TableGPT2's key innovations is its novel table encoder, specifically designed to capture schema-level and cell-level information. This encoder strengthens the model's ability to handle ambiguous queries, missing column names, and irregular tables commonly encountered in real-world applications. Similar to visual language models, this pioneering approach integrates with the decoder to form a robust large multimodal model. We believe the results are compelling: over 23 benchmarking metrics, TableGPT2 achieves an average performance improvement of 35.20% in the 7B model and 49.32% in the 72B model over prior benchmark-neutral LLMs, with robust general-purpose capabilities intact.

CVDec 16, 2025
ChartAgent: A Chart Understanding Framework with Tool Integrated Reasoning

Boran Wang, Xinming Wang, Yi Chen et al.

With their high information density and intuitive readability, charts have become the de facto medium for data analysis and communication across disciplines. Recent multimodal large language models (MLLMs) have made notable progress in automated chart understanding, yet they remain heavily dependent on explicit textual annotations and the performance degrades markedly when key numerals are absent. To address this limitation, we introduce ChartAgent, a chart understanding framework grounded in Tool-Integrated Reasoning (TIR). Inspired by human cognition, ChartAgent decomposes complex chart analysis into a sequence of observable, replayable steps. Supporting this architecture is an extensible, modular tool library comprising more than a dozen core tools, such as keyelement detection, instance segmentation, and optical character recognition (OCR), which the agent dynamically orchestrates to achieve systematic visual parsing across diverse chart types. Leveraging TIRs transparency and verifiability, ChartAgent moves beyond the black box paradigm by standardizing and consolidating intermediate outputs into a structured Evidence Package, providing traceable and reproducible support for final conclusions. Experiments show that ChartAgent substantially improves robustness under sparse annotation settings, offering a practical path toward trustworthy and extensible systems for chart understanding.

CVMay 23, 2024
Deep Convolutional Neural Networks Meet Variational Shape Compactness Priors for Image Segmentation

Kehui Zhang, Lingfeng Li, Hao Liu et al.

Shape compactness is a key geometrical property to describe interesting regions in many image segmentation tasks. In this paper, we propose two novel algorithms to solve the introduced image segmentation problem that incorporates a shape-compactness prior. Existing algorithms for such a problem often suffer from computational inefficiency, difficulty in reaching a local minimum, and the need to fine-tune the hyperparameters. To address these issues, we propose a novel optimization model along with its equivalent primal-dual model and introduce a new optimization algorithm based on primal-dual threshold dynamics (PD-TD). Additionally, we relax the solution constraint and propose another novel primal-dual soft threshold-dynamics algorithm (PD-STD) to achieve superior performance. Based on the variational explanation of the sigmoid layer, the proposed PD-STD algorithm can be integrated into Deep Neural Networks (DNNs) to enforce compact regions as image segmentation results. Compared to existing deep learning methods, extensive experiments demonstrated that the proposed algorithms outperformed state-of-the-art algorithms in numerical efficiency and effectiveness, especially while applying to the popular networks of DeepLabV3 and IrisParseNet with higher IoU, dice, and compactness metrics on noisy Iris datasets. In particular, the proposed algorithms significantly improve IoU by 20% training on a highly noisy image dataset.

BMOct 11, 2024
CryoFM: A Flow-based Foundation Model for Cryo-EM Densities

Yi Zhou, Yilai Li, Jing Yuan et al.

Cryo-electron microscopy (cryo-EM) is a powerful technique in structural biology and drug discovery, enabling the study of biomolecules at high resolution. Significant advancements by structural biologists using cryo-EM have led to the production of over 38,626 protein density maps at various resolutions1. However, cryo-EM data processing algorithms have yet to fully benefit from our knowledge of biomolecular density maps, with only a few recent models being data-driven but limited to specific tasks. In this study, we present CryoFM, a foundation model designed as a generative model, learning the distribution of high-quality density maps and generalizing effectively to downstream tasks. Built on flow matching, CryoFM is trained to accurately capture the prior distribution of biomolecular density maps. Furthermore, we introduce a flow posterior sampling method that leverages CRYOFM as a flexible prior for several downstream tasks in cryo-EM and cryo-electron tomography (cryo-ET) without the need for fine-tuning, achieving state-of-the-art performance on most tasks and demonstrating its potential as a foundational model for broader applications in these fields.

25.0CLApr 4
Leveraging Large Language Models for Sentiment Analysis: Multi-Modal Analysis of Decentraland's MANA Token

Xintong Wu, Peiting Tsai, Jing Yuan et al.

Decentraland, a decentralized virtual reality platform operating within the expanding Metaverse ecosystem, utilizes its native MANA token to facilitate virtual asset transactions and governance. This study investigates the integration of Discord community sentiment with multi-modal financial data to enhance cryptocurrency price prediction within virtual world economies. We address: (1) identifying sentiment patterns within Decentraland's Discord community, and (2) evaluating the impact of multi-modal features on token return forecasting. Using a BERT-based large language model for sentiment analysis, we develop two LSTM architectures: a baseline incorporating historical prices and a multi-modal variant integrating sentiment scores, trading volume, and market capitalization. Results indicate predominantly neutral community sentiment with a positive skew. The multi-modal model significantly outperforms the price-only baseline in prediction accuracy. These findings demonstrate the predictive value of community-derived signals for virtual economy forecasting and establish a foundation for future research at the intersection of immersive virtual environments, natural language processing, and cryptocurrency market analysis.

LGFeb 8, 2025
Multi-scale Masked Autoencoder for Electrocardiogram Anomaly Detection

Ya Zhou, Yujie Yang, Jianhuang Gan et al.

Electrocardiogram (ECG) analysis is a fundamental tool for diagnosing cardiovascular conditions, yet anomaly detection in ECG signals remains challenging due to their inherent complexity and variability. We propose Multi-scale Masked Autoencoder for ECG anomaly detection (MMAE-ECG), a novel end-to-end framework that effectively captures both global and local dependencies in ECG data. Unlike state-of-the-art methods that rely on heartbeat segmentation or R-peak detection, MMAE-ECG eliminates the need for such pre-processing steps, enhancing its suitability for clinical deployment. MMAE-ECG partitions ECG signals into non-overlapping segments, with each segment assigned learnable positional embeddings. A novel multi-scale masking strategy and multi-scale attention mechanism, along with distinct positional embeddings, enable a lightweight Transformer encoder to effectively capture both local and global dependencies. The masked segments are then reconstructed using a single-layer Transformer block, with an aggregation strategy employed during inference to refine the outputs. Experimental results demonstrate that our method achieves performance comparable to state-of-the-art approaches while significantly reducing computational complexity-approximately 1/78 of the floating-point operations (FLOPs) required for inference. Ablation studies further validate the effectiveness of each component, highlighting the potential of multi-scale masked autoencoders for anomaly detection.

LGSep 25, 2025
Can Federated Learning Safeguard Private Data in LLM Training? Vulnerabilities, Attacks, and Defense Evaluation

Wenkai Guo, Xuefeng Liu, Haolin Wang et al.

Fine-tuning large language models (LLMs) with local data is a widely adopted approach for organizations seeking to adapt LLMs to their specific domains. Given the shared characteristics in data across different organizations, the idea of collaboratively fine-tuning an LLM using data from multiple sources presents an appealing opportunity. However, organizations are often reluctant to share local data, making centralized fine-tuning impractical. Federated learning (FL), a privacy-preserving framework, enables clients to retain local data while sharing only model parameters for collaborative training, offering a potential solution. While fine-tuning LLMs on centralized datasets risks data leakage through next-token prediction, the iterative aggregation process in FL results in a global model that encapsulates generalized knowledge, which some believe protects client privacy. In this paper, however, we present contradictory findings through extensive experiments. We show that attackers can still extract training data from the global model, even using straightforward generation methods, with leakage increasing as the model size grows. Moreover, we introduce an enhanced attack strategy tailored to FL, which tracks global model updates during training to intensify privacy leakage. To mitigate these risks, we evaluate privacy-preserving techniques in FL, including differential privacy, regularization-constrained updates and adopting LLMs with safety alignment. Our results provide valuable insights and practical guidelines for reducing privacy risks when training LLMs with FL.

SIMay 27, 2025
Recovering Fairness Directly from Modularity: a New Way for Fair Community Partitioning

Yufeng Wang, Yiguang Bai, Tianqing Zhu et al.

Community partitioning is crucial in network analysis, with modularity optimization being the prevailing technique. However, traditional modularity-based methods often overlook fairness, a critical aspect in real-world applications. To address this, we introduce protected group networks and propose a novel fairness-modularity metric. This metric extends traditional modularity by explicitly incorporating fairness, and we prove that minimizing it yields naturally fair partitions for protected groups while maintaining theoretical soundness. We develop a general optimization framework for fairness partitioning and design the efficient Fair Fast Newman (FairFN) algorithm, enhancing the Fast Newman (FN) method to optimize both modularity and fairness. Experiments show FairFN achieves significantly improved fairness and high-quality partitions compared to state-of-the-art methods, especially on unbalanced datasets.

CLDec 23, 2024
The Power of Adaptation: Boosting In-Context Learning through Adaptive Prompting

Shuzhang Cai, Twumasi Mensah-Boateng, Xander Kuksov et al.

Large Language Models (LLMs) have demonstrated exceptional abilities across a broad range of language-related tasks, including generating solutions to complex reasoning problems. An effective technique to enhance LLM performance is in-context learning, which encourages a step-by-step reasoning process by including explanatory examples to guide the model's responses. However, selecting appropriate exemplars for the model poses a challenge, as each dataset demands a distinct set of exemplars to enable the LLM to learn effectively and perform well on the test set. Current studies often rely on uncertainty- or diversity-based selection strategies to select exemplars for annotation and to improve model learning. However, these studies typically employ a non-adaptive approach, selecting a set of exemplars all at once. We argue that this non-adaptive strategy may result in a set of exemplars with high redundancy in terms of the knowledge covered, ultimately reducing their overall informativeness. To address this limitation, we propose \textsc{Adaptive-Prompt}, a novel method that adaptively selects exemplars by leveraging model feedback from previously chosen exemplars. Experimental results show that \textsc{Adaptive-Prompt} significantly enhances LLM performance across a variety of reasoning tasks.

GTJun 19, 2024
Submodular Participatory Budgeting

Jing Yuan, Shaojie Tang

Participatory budgeting refers to the practice of allocating public resources by collecting and aggregating individual preferences. Most existing studies in this field often assume an additive utility function, where each individual holds a private utility for each candidate project, and the total utility of a set of funded projects is simply the sum of the utilities of all projects. We argue that this assumption does not always hold in reality. For example, building two playgrounds in the same neighborhood does not necessarily lead to twice the utility of building a single playground. To address this, we extend the existing study by proposing a submodular participatory budgeting problem, assuming that the utility function of each individual is a monotone and submodular function over funded projects. We propose and examine three preference elicitation methods, including \emph{ranking-by-marginal-values}, \emph{ranking-by-values} and \emph{threshold approval votes}, and analyze their performances in terms of distortion. Notably, if the utility function is addicative, our aggregation rule designed for threshold approval votes achieves a better distortion than the state-of-the-art approach.

DSFeb 9, 2024
Assortment Planning with Sponsored Products

Shaojie Tang, Shuzhang Cai, Jing Yuan et al.

In the rapidly evolving landscape of retail, assortment planning plays a crucial role in determining the success of a business. With the rise of sponsored products and their increasing prominence in online marketplaces, retailers face new challenges in effectively managing their product assortment in the presence of sponsored products. Remarkably, previous research in assortment planning largely overlooks the existence of sponsored products and their potential impact on overall recommendation effectiveness. Instead, they commonly make the simplifying assumption that all products are either organic or non-sponsored. This research gap underscores the necessity for a more thorough investigation of the assortment planning challenge when sponsored products are in play. We formulate the assortment planning problem in the presence of sponsored products as a combinatorial optimization task. The ultimate objective is to compute an assortment plan that optimizes expected revenue while considering the specific requirements of placing sponsored products strategically.

ROJan 31, 2022
G$ \mathbf{^2} $VD Planner: Efficient Motion Planning With Grid-based Generalized Voronoi Diagrams

Jian Wen, Xuebo Zhang, Qingchen Bi et al.

In this paper, an efficient motion planning approach with grid-based generalized Voronoi diagrams (G$ \mathbf{^2} $VD) is newly proposed for mobile robots. Different from existing approaches, the novelty of this work is twofold: 1) a new state lattice-based path searching approach is proposed, in which the search space is reduced to a novel Voronoi corridor to further improve the search efficiency; 2) an efficient quadratic programming-based path smoothing approach is presented, wherein the clearance to obstacles is considered to improve the path clearance of hard-constrained path smoothing approaches. We validate the efficiency and smoothness of our approach in various challenging simulation scenarios and outdoor environments. It is shown that the computational efficiency is improved by 17.1% in the path searching stage, and path smoothing with the proposed approach is 6.6 times faster than an advanced sparse-banded structure-based path smoothing approach and 53.3 times faster than the popular timed-elastic-band planner. A video showing outdoor navigation on our campus is available at https://youtu.be/iMXGthgvp58.

LGNov 1, 2021
Partial-Adaptive Submodular Maximization

Shaojie Tang, Jing Yuan

The goal of a typical adaptive sequential decision making problem is to design an interactive policy that selects a group of items sequentially, based on some partial observations, to maximize the expected utility. It has been shown that the utility functions of many real-world applications, including pooled-based active learning and adaptive influence maximization, satisfy the property of adaptive submodularity. However, most of existing studies on adaptive submodular maximization focus on the fully adaptive setting, i.e., one must wait for the feedback from \emph{all} past selections before making the next selection. Although this approach can take full advantage of feedback from the past to make informed decisions, it may take a longer time to complete the selection process as compared with the non-adaptive solution where all selections are made in advance before any observations take place. In this paper, we explore the problem of partial-adaptive submodular maximization where one is allowed to make multiple selections in a batch simultaneously and observe their realizations together. Our approach enjoys the benefits of adaptivity while reducing the time spent on waiting for the observations from past selections. To the best of our knowledge, no results are known for partial-adaptive policies for the non-monotone adaptive submodular maximization problem. We study this problem under both cardinality constraint and knapsack constraints, and develop effective and efficient solutions for both cases. We also analyze the batch query complexity, i.e., the number of batches a policy takes to complete the selection process, of our policy under some additional assumptions.

DSSep 30, 2021
Submodular Optimization Beyond Nonnegativity: Adaptive Seed Selection in Incentivized Social Advertising

Shaojie Tang, Jing Yuan

The idea of social advertising (or social promotion) is to select a group of influential individuals (a.k.a \emph{seeds}) to help promote some products or ideas through an online social networks. There are two major players in the social advertising ecosystem: advertiser and platform. The platform sells viral engagements such as "like"s to advertisers by inserting their ads into the feed of seeds. These seeds receive monetary incentives from the platform in exchange for their participation in the social advertising campaign. Once an ad is engaged by a follower of some seed, the platform receives a fixed amount of payment, called cost per engagement, from the advertiser. The ad could potentially attract more engagements from followers' followers and trigger a viral contagion. At the beginning of a campaign, the advertiser submits a budget to the platform and this budget can be used for two purposes: recruiting seeds and paying for the viral engagements generated by the seeds. Note that the first part of payment goes to the seeds and the latter one is the actual revenue collected by the platform. In this setting, the problem for the platform is to recruit a group of seeds such that she can collect the largest possible amount of revenue subject to the budget constraint. We formulate this problem as a seed selection problem whose objective function is non-monotone and it might take on negative values, making existing results on submodular optimization and influence maximization not applicable to our setting. We study this problem under both non-adaptive and adaptive settings. Although we focus on social advertising in this paper, our results apply to any optimization problems whose objective function is the expectation of the minimum of a stochastic submodular function and a linear function.

LGApr 5, 2021
Optimal Sampling Gaps for Adaptive Submodular Maximization

Shaojie Tang, Jing Yuan

Running machine learning algorithms on large and rapidly growing volumes of data is often computationally expensive, one common trick to reduce the size of a data set, and thus reduce the computational cost of machine learning algorithms, is \emph{probability sampling}. It creates a sampled data set by including each data point from the original data set with a known probability. Although the benefit of running machine learning algorithms on the reduced data set is obvious, one major concern is that the performance of the solution obtained from samples might be much worse than that of the optimal solution when using the full data set. In this paper, we examine the performance loss caused by probability sampling in the context of adaptive submodular maximization. We consider a simple probability sampling method which selects each data point with probability at least $r\in[0,1]$. If we set $r=1$, our problem reduces to finding a solution based on the original full data set. We define sampling gap as the largest ratio between the optimal solution obtained from the full data set and the optimal solution obtained from the samples, over independence systems. Our main contribution is to show that if the sampling probability of each data point is at least $r$ and the utility function is policywise submodular, then the sampling gap is both upper bounded and lower bounded by $1/r$. We show that the property of policywise submodular can be found in a wide range of real-world applications, including pool-based active learning and adaptive viral marketing.

LGFeb 28, 2021
Adaptive Regularized Submodular Maximization

Shaojie Tang, Jing Yuan

In this paper, we study the problem of maximizing the difference between an adaptive submodular (revenue) function and an non-negative modular (cost) function under the adaptive setting. The input of our problem is a set of $n$ items, where each item has a particular state drawn from some known prior distribution $p$. The revenue function $g$ is defined over items and states, and the cost function $c$ is defined over items, i.e., each item has a fixed cost. The state of each item is unknown initially, one must select an item in order to observe its realized state. A policy $π$ specifies which item to pick next based on the observations made so far. Denote by $g_{avg}(π)$ the expected revenue of $π$ and let $c_{avg}(π)$ denote the expected cost of $π$. Our objective is to identify the best policy $π^o\in \arg\max_πg_{avg}(π)-c_{avg}(π)$ under a $k$-cardinality constraint. Since our objective function can take on both negative and positive values, the existing results of submodular maximization may not be applicable. To overcome this challenge, we develop a series of effective solutions with performance grantees. Let $π^o$ denote the optimal policy. For the case when $g$ is adaptive monotone and adaptive submodular, we develop an effective policy $π^l$ such that $g_{avg}(π^l) - c_{avg}(π^l) \geq (1-\frac{1}{e}-ε)g_{avg}(π^o) - c_{avg}(π^o)$, using only $O(nε^{-2}\log ε^{-1})$ value oracle queries. For the case when $g$ is adaptive submodular, we present a randomized policy $π^r$ such that $g_{avg}(π^r) - c_{avg}(π^r) \geq \frac{1}{e}g_{avg}(π^o) - c_{avg}(π^o)$.

RODec 16, 2020
E$ \mathbf{^3} $MoP: Efficient Motion Planning Based on Heuristic-Guided Motion Primitives Pruning and Path Optimization With Sparse-Banded Structure

Jian Wen, Xuebo Zhang, Haiming Gao et al.

To solve the autonomous navigation problem in complex environments, an efficient motion planning approach is newly presented in this paper. Considering the challenges from large-scale, partially unknown complex environments, a three-layer motion planning framework is elaborately designed, including global path planning, local path optimization, and time-optimal velocity planning. Compared with existing approaches, the novelty of this work is twofold: 1) a novel heuristic-guided pruning strategy of motion primitives is proposed and fully integrated into the state lattice-based global path planner to further improve the computational efficiency of graph search, and 2) a new soft-constrained local path optimization approach is proposed, wherein the sparse-banded system structure of the underlying optimization problem is fully exploited to efficiently solve the problem. We validate the safety, smoothness, flexibility, and efficiency of our approach in various complex simulation scenarios and challenging real-world tasks. It is shown that the computational efficiency is improved by 66.21% in the global planning stage and the motion efficiency of the robot is improved by 22.87% compared with the recent quintic Bézier curve-based state space sampling approach. We name the proposed motion planning framework E$ \mathrm{^3} $MoP, where the number 3 not only means our approach is a three-layer framework but also means the proposed approach is efficient in three stages.

LGDec 11, 2020
Adaptive Submodular Meta-Learning

Shaojie Tang, Jing Yuan

Meta-Learning has gained increasing attention in the machine learning and artificial intelligence communities. In this paper, we introduce and study an adaptive submodular meta-learning problem. The input of our problem is a set of items, where each item has a random state which is initially unknown. The only way to observe an item's state is to select that item. Our objective is to adaptively select a group of items that achieve the best performance over a set of tasks, where each task is represented as an adaptive submodular function that maps sets of items and their states to a real number. To reduce the computational cost while maintaining a personalized solution for each future task, we first select an initial solution set based on previously observed tasks, then adaptively add the remaining items to the initial solution set when a new task arrives. As compared to the solution where a brand new solution is computed for each new task, our meta-learning based approach leads to lower computational overhead at test time since the initial solution set is pre-computed in the training stage. To solve this problem, we propose a two-phase greedy policy and show that it achieves a $1/2$ approximation ratio for the monotone case. For the non-monotone case, we develop a two-phase randomized greedy policy that achieves a $1/32$ approximation ratio.

LGJul 7, 2020
Adaptive Cascade Submodular Maximization

Shaojie Tang, Jing Yuan

In this paper, we propose and study the cascade submodular maximization problem under the adaptive setting. The input of our problem is a set of items, each item is in a particular state (i.e., the marginal contribution of an item) which is drawn from a known probability distribution. However, we can not know its actual state before selecting it. As compared with existing studies on stochastic submodular maximization, one unique setting of our problem is that each item is associated with a continuation probability which represents the probability that one is allowed to continue to select the next item after selecting the current one. Intuitively, this term captures the externality of selecting one item to all its subsequent items in terms of the opportunity of being selected. Therefore, the actual set of items that can be selected by a policy depends on the specific ordering it adopts to select items, this makes our problem fundamentally different from classical submodular set optimization problems. Our objective is to identify the best sequence of selecting items so as to maximize the expected utility of the selected items. We propose a class of stochastic utility functions, \emph{adaptive cascade submodular functions}, and show that the objective functions in many practical application domains satisfy adaptive cascade submodularity. Then we develop a $0.12$ approximation algorithm to the adaptive cascade submodular maximization problem.

QMMar 11, 2020
A deep belief network-based method to identify proteomic risk markers for Alzheimer disease

Ning An, Liuqi Jin, Huitong Ding et al.

While a large body of research has formally identified apolipoprotein E (APOE) as a major genetic risk marker for Alzheimer disease, accumulating evidence supports the notion that other risk markers may exist. The traditional Alzheimer-specific signature analysis methods, however, have not been able to make full use of rich protein expression data, especially the interaction between attributes. This paper develops a novel feature selection method to identify pathogenic factors of Alzheimer disease using the proteomic and clinical data. This approach has taken the weights of network nodes as the importance order of signaling protein expression values. After generating and evaluating the candidate subset, the method helps to select an optimal subset of proteins that achieved an accuracy greater than 90%, which is superior to traditional machine learning methods for clinical Alzheimer disease diagnosis. Besides identifying a proteomic risk marker and further reinforce the link between metabolic risk factors and Alzheimer disease, this paper also suggests that apidonectin-linked pathways are a possible therapeutic drug target.

LGFeb 13, 2020
Assortment Optimization with Repeated Exposures and Product-dependent Patience Cost

Shaojie Tang, Jing Yuan

In this paper, we study the assortment optimization problem faced by many online retailers such as Amazon. We develop a \emph{cascade multinomial logit model}, based on the classic multinomial logit model, to capture the consumers' purchasing behavior across multiple stages. Different from existing studies, our model allows for repeated exposures of a product, i.e., the same product can be displayed multiple times across different stages. In addition, each consumer has a \emph{patience budget} that is sampled from a known distribution and each product is associated with a \emph{patience cost}, which captures the cognitive efforts spent on browsing that product. Given an assortment of products, a consumer sequentially browses them stage by stage. After browsing all products in one stage, if the utility of a product exceeds the utility of the outside option, the consumer proceeds to purchase the product and leave the platform. Otherwise, if the patience cost of all products browsed up to that point is no larger than her patience budget, she continues to view the next stage. We propose an approximation solution to this problem.

LGJun 19, 2019
Variational Fair Clustering

Imtiaz Masud Ziko, Eric Granger, Jing Yuan et al.

We propose a general variational framework of fair clustering, which integrates an original Kullback-Leibler (KL) fairness term with a large class of clustering objectives, including prototype or graph based. Fundamentally different from the existing combinatorial and spectral solutions, our variational multi-term approach enables to control the trade-off levels between the fairness and clustering objectives. We derive a general tight upper bound based on a concave-convex decomposition of our fairness term, its Lipschitz-gradient property and the Pinsker's inequality. Our tight upper bound can be jointly optimized with various clustering objectives, while yielding a scalable solution, with convergence guarantee. Interestingly, at each iteration, it performs an independent update for each assignment variable. Therefore, it can be easily distributed for large-scale datasets. This scalability is important as it enables to explore different trade-off levels between the fairness and clustering objectives. Unlike spectral relaxation, our formulation does not require computing its eigenvalue decomposition. We report comprehensive evaluations and comparisons with state-of-the-art methods over various fair-clustering benchmarks, which show that our variational formulation can yield highly competitive solutions in terms of fairness and clustering objectives.

LGMay 14, 2019
Adaptive Robust Optimization with Nearly Submodular Structure

Shaojie Tang, Jing Yuan

Constrained submodular maximization has been extensively studied in the recent years. In this paper, we study adaptive robust optimization with nearly submodular structure (ARONSS). Our objective is to randomly select a subset of items that maximizes the worst-case value of several reward functions simultaneously. Our work differs from existing studies in two ways: (1) we study the robust optimization problem under the adaptive setting, i.e., one needs to adaptively select items based on the feedback collected from picked items, and (2) our results apply to a broad range of reward functions characterized by $ε$-nearly submodular function. We first analyze the adaptvity gap of ARONSS and show that the gap between the best adaptive solution and the best non-adaptive solution is bounded. Then we propose a approximate solution to this problem when all reward functions are submodular. Our algorithm achieves approximation ratio $(1-1/e)$ when considering matroid constraint. At last, we present two heuristics for the general case. All proposed solutions are non-adaptive which are easy to implement.

CVApr 8, 2019
Constrained Deep Networks: Lagrangian Optimization via Log-Barrier Extensions

Hoel Kervadec, Jose Dolz, Jing Yuan et al.

This study investigates imposing hard inequality constraints on the outputs of convolutional neural networks (CNN) during training. Several recent works showed that the theoretical and practical advantages of Lagrangian optimization over simple penalties do not materialize in practice when dealing with modern CNNs involving millions of parameters. Therefore, constrained CNNs are typically handled with penalties. We propose *log-barrier extensions*, which approximate Lagrangian optimization of constrained-CNN problems with a sequence of unconstrained losses. Unlike standard interior-point and log-barrier methods, our formulation does not need an initial feasible solution. The proposed extension yields an upper bound on the duality gap -- generalizing the result of standard log-barriers -- and yielding sub-optimality certificates for feasible solutions. While sub-optimality is not guaranteed for non-convex problems, this result shows that log-barrier extensions are a principled way to approximate Lagrangian optimization for constrained CNNs via implicit dual variables. We report weakly supervised image segmentation experiments, with various constraints, showing that our formulation outperforms substantially the existing constrained-CNN methods, in terms of accuracy, constraint satisfaction and training stability, more so when dealing with a large number of constraints.

LGJan 23, 2019
Cascade Submodular Maximization: Question Selection and Sequencing in Online Personality Quiz

Shaojie Tang, Jing Yuan

Personality quiz is a powerful tool that enables costumer segmentation by actively asking them questions, and marketers are using it as an effective method of generating leads and increasing e-commerce sales. In this paper, we study the problem of how to select and sequence a group of quiz questions so as to optimize the quality of customer segmentation. We assume that the customer will sequentially scan the list of questions. After reading a question, the customer makes two, possibly correlated, random decisions: 1) she first decides whether to answer this question or not, and then 2) decides whether to continue reading the next question or not. We further assume that the utility of questions that have been answered can be captured by a monotone and submodular function. In general, our problem falls into the category of non-adaptive active learning based customer profiling. Note that under the our model, the probability of a question being answered depends on the location of that question, as well as the set of other questions placed ahead of that question, this makes our problem fundamentally different from existing studies on submodular optimization. We develop a series of question selection and sequencing strategies with provable performance bound. Although we focus on the application of quiz design in this paper, our results apply to a broad range of applications, including assortment optimization with position bias effect.

ROJan 7, 2019
CAE-RLSM: Consistent and Efficient Redundant Line Segment Merging for Online Feature Map Building

Jian Wen, Xuebo Zhang, Haiming Gao et al.

In order to obtain a compact line segment-based map representation for localization and planning of mobile robots, it is necessary to merge redundant line segments which physically represent the same part of the environment in different scans. In this paper, a consistent and efficient redundant line segment merging approach (CAE-RLSM) is proposed for online feature map building. The proposed CAE-RLSM is composed of two newly proposed modules: one-to-many incremental line segment merging (OTM-ILSM) and multi-processing global map adjustment (MP-GMA). Different from state-of-the-art offline merging approaches, the proposed CAE-RLSM can achieve real-time mapping performance, which not only reduces the redundancy of incremental merging with high efficiency, but also solves the problem of global map adjustment after loop closing to guarantee global consistency. Furthermore, a new correlation-based evaluation metric is proposed for the quality evaluation of line segment maps. This evaluation metric does not require manual measurement of the environmental metric information, instead it makes full use of globally consistent laser scans obtained by simultaneous localization and mapping (SLAM) systems to compare the performance of different line segment-based mapping approaches in an objective and fair manner. Comparative experimental results with respect to a mean shift-based offline redundant line segment merging approach (MS-RLSM) and an offline version of one-to-one incremental line segment merging approach (O$^2$TO-ILSM) on both public data sets and self-recorded data set are presented to show the superior performance of CAE-RLSM in terms of efficiency and map quality in different scenarios.

CVSep 24, 2018
Modern Convex Optimization to Medical Image Analysis

Jing Yuan, Aaron Fenster

Recently, diagnosis, therapy and monitoring of human diseases involve a variety of imaging modalities, such as magnetic resonance imaging(MRI), computed tomography(CT), Ultrasound(US) and Positron-emission tomography(PET) as well as a variety of modern optical techniques. Over the past two decade, it has been recognized that advanced image processing techniques provide valuable information to physicians for diagnosis, image guided therapy and surgery, and monitoring of the treated organ to the therapy. Many researchers and companies have invested significant efforts in the developments of advanced medical image analysis methods; especially in the two core studies of medical image segmentation and registration, segmentations of organs and lesions are used to quantify volumes and shapes used in diagnosis and monitoring treatment; registration of multimodality images of organs improves detection, diagnosis and staging of diseases as well as image-guided surgery and therapy, registration of images obtained from the same modality are used to monitor progression of therapy. These challenging clinical-motivated applications introduce novel and sophisticated mathematical problems which stimulate developments of advanced optimization and computing methods, especially convex optimization attaining optimum in a global sense, hence, bring an enormous spread of research topics for recent computational medical image analysis. Particularly, distinct from the usual image processing, most medical images have a big volume of acquired data, often in 3D or 4D (3D + t) along with great noises or incomplete image information, and form the challenging large-scale optimization problems; how to process such poor 'big data' of medical images efficiently and solve the corresponding optimization problems robustly are the key factors of modern medical image analysis.

CVMay 28, 2018
Multi-region segmentation of bladder cancer structures in MRI with progressive dilated convolutional networks

Jose Dolz, Xiaopan Xu, Jerome Rony et al.

Precise segmentation of bladder walls and tumor regions is an essential step towards non-invasive identification of tumor stage and grade, which is critical for treatment decision and prognosis of patients with bladder cancer (BC). However, the automatic delineation of bladder walls and tumor in magnetic resonance images (MRI) is a challenging task, due to important bladder shape variations, strong intensity inhomogeneity in urine and very high variability across population, particularly on tumors appearance. To tackle these issues, we propose to use a deep fully convolutional neural network. The proposed network includes dilated convolutions to increase the receptive field without incurring extra cost nor degrading its performance. Furthermore, we introduce progressive dilations in each convolutional block, thereby enabling extensive receptive fields without the need for large dilation rates. The proposed network is evaluated on 3.0T T2-weighted MRI scans from 60 pathologically confirmed patients with BC. Experiments shows the proposed model to achieve high accuracy, with a mean Dice similarity coefficient of 0.98, 0.84 and 0.69 for inner wall, outer wall and tumor region, respectively. These results represent a very good agreement with reference contours and an increase in performance compared to existing methods. In addition, inference times are less than a second for a whole 3D volume, which is between 2-3 orders of magnitude faster than related state-of-the-art methods for this application. We showed that a CNN can yield precise segmentation of bladder walls and tumors in bladder cancer patients on MRI. The whole segmentation process is fully-automatic and yields results in very good agreement with the reference standard, demonstrating the viability of deep learning models for the automatic multi-region segmentation of bladder cancer MRI images.