Jinsung Yoon

Nicasia Beebe-Wang, Sayna Ebrahimi, Jinsung Yoon et al.

Real-world time series data that commonly reflect sequential human behavior are often uniquely irregularly sampled and sparse, with highly nonuniform sampling over time and entities. Yet, commonly-used pretraining and augmentation methods for time series are not specifically designed for such scenarios. In this paper, we present PAITS (Pretraining and Augmentation for Irregularly-sampled Time Series), a framework for identifying suitable pretraining strategies for sparse and irregularly sampled time series datasets. PAITS leverages a novel combination of NLP-inspired pretraining tasks and augmentations, and a random search to identify an effective strategy for a given dataset. We demonstrate that different datasets benefit from different pretraining choices. Compared with prior methods, our approach is better able to consistently improve pretraining across multiple datasets and domains. Our code is available at \url{https://github.com/google-research/google-research/tree/master/irregular_timeseries_pretraining}.

Hongjin Su, Howard Yen, Mengzhou Xia et al.

Existing retrieval benchmarks primarily consist of information-seeking queries (e.g., aggregated questions from search engines) where keyword or semantic-based retrieval is usually sufficient. However, many complex real-world queries require in-depth reasoning to identify relevant documents that go beyond surface form matching. For example, finding documentation for a coding question requires understanding the logic and syntax of the functions involved. To better benchmark retrieval on such challenging queries, we introduce BRIGHT, the first text retrieval benchmark that requires intensive reasoning to retrieve relevant documents. Our dataset consists of 1,384 real-world queries spanning diverse domains, such as economics, psychology, mathematics, and coding. These queries are drawn from naturally occurring and carefully curated human data. Extensive evaluation reveals that even state-of-the-art retrieval models perform poorly on BRIGHT. The leading model on the MTEB leaderboard (Muennighoff et al., 2023) SFR-Embedding-Mistral (Meng et al., 2024), which achieves a score of 59.0 nDCG@10,1 produces a score of nDCG@10 of 18.3 on BRIGHT. We show that incorporating explicit reasoning about the query improves retrieval performance by up to 12.2 points. Moreover, incorporating retrieved documents from the top-performing retriever boosts question-answering performance. We believe that BRIGHT paves the way for future research on retrieval systems in more realistic and challenging settings.

Daniel Jarrett, Jinsung Yoon, Ioana Bica et al.

Time-series learning is the bread and butter of data-driven *clinical decision support*, and the recent explosion in ML research has demonstrated great potential in various healthcare settings. At the same time, medical time-series problems in the wild are challenging due to their highly *composite* nature: They entail design choices and interactions among components that preprocess data, impute missing values, select features, issue predictions, estimate uncertainty, and interpret models. Despite exponential growth in electronic patient data, there is a remarkable gap between the potential and realized utilization of ML for clinical research and decision support. In particular, orchestrating a real-world project lifecycle poses challenges in engineering (i.e. hard to build), evaluation (i.e. hard to assess), and efficiency (i.e. hard to optimize). Designed to address these issues simultaneously, Clairvoyance proposes a unified, end-to-end, autoML-friendly pipeline that serves as a (i) software toolkit, (ii) empirical standard, and (iii) interface for optimization. Our ultimate goal lies in facilitating transparent and reproducible experimentation with complex inference workflows, providing integrated pathways for (1) personalized prediction, (2) treatment-effect estimation, and (3) information acquisition. Through illustrative examples on real-world data in outpatient, general wards, and intensive-care settings, we illustrate the applicability of the pipeline paradigm on core tasks in the healthcare journey. To the best of our knowledge, Clairvoyance is the first to demonstrate viability of a comprehensive and automatable pipeline for clinical time-series ML.

Yanfei Chen, Jinsung Yoon, Devendra Singh Sachan et al. · mila

Recent advances in large language models (LLMs) have enabled autonomous agents with complex reasoning and task-fulfillment capabilities using a wide range of tools. However, effectively identifying the most relevant tools for a given task becomes a key bottleneck as the toolset size grows, hindering reliable tool utilization. To address this, we introduce Re-Invoke, an unsupervised tool retrieval method designed to scale effectively to large toolsets without training. Specifically, we first generate a diverse set of synthetic queries that comprehensively cover different aspects of the query space associated with each tool document during the tool indexing phase. Second, we leverage LLM's query understanding capabilities to extract key tool-related context and underlying intents from user queries during the inference phase. Finally, we employ a novel multi-view similarity ranking strategy based on intents to pinpoint the most relevant tools for each query. Our evaluation demonstrates that Re-Invoke significantly outperforms state-of-the-art alternatives in both single-tool and multi-tool scenarios, all within a fully unsupervised setting. Notably, on the ToolE datasets, we achieve a 20% relative improvement in nDCG@5 for single-tool retrieval and a 39% improvement for multi-tool retrieval.

Jiefeng Chen, Jinsung Yoon, Sayna Ebrahimi et al.

Large language models (LLMs) have recently shown great advances in a variety of tasks, including natural language understanding and generation. However, their use in high-stakes decision-making scenarios is still limited due to the potential for errors. Selective prediction is a technique that can be used to improve the reliability of the LLMs by allowing them to abstain from making predictions when they are unsure of the answer. In this work, we propose a novel framework for adaptation with self-evaluation to improve the selective prediction performance of LLMs. Our framework is based on the idea of using parameter-efficient tuning to adapt the LLM to the specific task at hand while improving its ability to perform self-evaluation. We evaluate our method on a variety of question-answering (QA) datasets and show that it outperforms state-of-the-art selective prediction methods. For example, on the CoQA benchmark, our method improves the AUACC from 91.23% to 92.63% and improves the AUROC from 74.61% to 80.25%.

Jiefeng Chen, Jinsung Yoon, Sayna Ebrahimi et al.

Selective prediction aims to learn a reliable model that abstains from making predictions when uncertain. These predictions can then be deferred to humans for further evaluation. As an everlasting challenge for machine learning, in many real-world scenarios, the distribution of test data is different from the training data. This results in more inaccurate predictions, and often increased dependence on humans, which can be difficult and expensive. Active learning aims to lower the overall labeling effort, and hence human dependence, by querying the most informative examples. Selective prediction and active learning have been approached from different angles, with the connection between them missing. In this work, we introduce a new learning paradigm, active selective prediction, which aims to query more informative samples from the shifted target domain while increasing accuracy and coverage. For this new paradigm, we propose a simple yet effective approach, ASPEST, that utilizes ensembles of model snapshots with self-training with their aggregated outputs as pseudo labels. Extensive experiments on numerous image, text and structured datasets, which suffer from domain shifts, demonstrate that ASPEST can significantly outperform prior work on selective prediction and active learning (e.g. on the MNIST$\to$SVHN benchmark with the labeling budget of 100, ASPEST improves the AUACC metric from 79.36% to 88.84%) and achieves more optimal utilization of humans in the loop.

Chun-Hao Chang, Jinsung Yoon, Sercan Arik et al.

Anomaly detection (AD) plays an important role in numerous applications. We focus on two understudied aspects of AD that are critical for integration into real-world applications. First, most AD methods cannot incorporate labeled data that are often available in practice in small quantities and can be crucial to achieve high AD accuracy. Second, most AD methods are not interpretable, a bottleneck that prevents stakeholders from understanding the reason behind the anomalies. In this paper, we propose a novel AD framework that adapts a white-box model class, Generalized Additive Models, to detect anomalies using a partial identification objective which naturally handles noisy or heterogeneous features. In addition, the proposed framework, DIAD, can incorporate a small amount of labeled data to further boost anomaly detection performances in semi-supervised settings. We demonstrate the superiority of our framework compared to previous work in both unsupervised and semi-supervised settings using diverse tabular datasets. For example, under 5 labeled anomalies DIAD improves from 86.2\% to 89.4\% AUC by learning AD from unlabeled data. We also present insightful interpretations that explain why DIAD deems certain samples as anomalies.

Aya Abdelsalam Ismail, Sercan Ö. Arik, Jinsung Yoon et al.

The need for reliable model explanations is prominent for many machine learning applications, particularly for tabular and time-series data as their use cases often involve high-stakes decision making. Towards this goal, we introduce a novel interpretable modeling framework, Interpretable Mixture of Experts (IME), that yields high accuracy, comparable to `black-box' Deep Neural Networks (DNNs) in many cases, along with useful interpretability capabilities. IME consists of an assignment module and a mixture of experts, with each sample being assigned to a single expert for prediction. We introduce multiple options for IME based on the assignment and experts being interpretable. When the experts are chosen to be interpretable such as linear models, IME yields an inherently-interpretable architecture where the explanations produced by IME are the exact descriptions of how the prediction is computed. In addition to constituting a standalone inherently-interpretable architecture, IME has the premise of being integrated with existing DNNs to offer interpretability to a subset of samples while maintaining the accuracy of the DNNs. Through extensive experiments on 15 tabular and time-series datasets, IME is demonstrated to be more accurate than single interpretable models and perform comparably with existing state-of-the-art DNNs in accuracy. On most datasets, IME even outperforms DNNs, while providing faithful explanations. Lastly, IME's explanations are compared to commonly-used post-hoc explanations methods through a user study -- participants are able to better predict the model behavior when given IME explanations, while finding IME's explanations more faithful and trustworthy.

Jinsung Yoon, Kihyuk Sohn, Chun-Liang Li et al.

Semi-supervised anomaly detection is a common problem, as often the datasets containing anomalies are partially labeled. We propose a canonical framework: Semi-supervised Pseudo-labeler Anomaly Detection with Ensembling (SPADE) that isn't limited by the assumption that labeled and unlabeled data come from the same distribution. Indeed, the assumption is often violated in many applications - for example, the labeled data may contain only anomalies unlike unlabeled data, or unlabeled data may contain different types of anomalies, or labeled data may contain only 'easy-to-label' samples. SPADE utilizes an ensemble of one class classifiers as the pseudo-labeler to improve the robustness of pseudo-labeling with distribution mismatch. Partial matching is proposed to automatically select the critical hyper-parameters for pseudo-labeling without validation data, which is crucial with limited labeled data. SPADE shows state-of-the-art semi-supervised anomaly detection performance across a wide range of scenarios with distribution mismatch in both tabular and image domains. In some common real-world settings such as model facing new types of unlabeled anomalies, SPADE outperforms the state-of-the-art alternatives by 5% AUC in average.

Jinsung Yoon, Sercan O Arik, Yanfei Chen et al.

Embeddings extracted by pre-trained Large Language Models (LLMs) have significant potential to improve information retrieval and search. Beyond the zero-shot setup in which they are being conventionally used, being able to take advantage of the information from the relevant query-corpus paired data can further boost the LLM capabilities. In this paper, we propose a novel method, Search-Adaptor, for customizing LLMs for information retrieval in an efficient and robust way. Search-Adaptor modifies the embeddings generated by pre-trained LLMs, and can be integrated with any LLM, including those only available via prediction APIs. On multiple English, multilingual, and multimodal retrieval datasets, we show consistent and significant performance benefits for Search-Adaptor -- e.g., more than 5% improvements for Google Embedding APIs in nDCG@10 averaged over 14 BEIR datasets.

Zachary Izzo, Jinsung Yoon, Sercan O. Arik et al.

In applications involving sensitive data, such as finance and healthcare, the necessity for preserving data privacy can be a significant barrier to machine learning model development. Differential privacy (DP) has emerged as one canonical standard for provable privacy. However, DP's strong theoretical guarantees often come at the cost of a large drop in its utility for machine learning, and DP guarantees themselves can be difficult to interpret. In this work, we propose a novel privacy notion, membership inference privacy (MIP), to address these challenges. We give a precise characterization of the relationship between MIP and DP, and show that MIP can be achieved using less amount of randomness compared to the amount required for guaranteeing DP, leading to a smaller drop in utility. MIP guarantees are also easily interpretable in terms of the success rate of membership inference attacks. Our theoretical results also give rise to a simple algorithm for guaranteeing MIP which can be used as a wrapper around any algorithm with a continuous output, including parametric model training.

Yunhao Ge, Sercan Ö. Arik, Jinsung Yoon et al.

Learning the causal structure behind data is invaluable for improving generalization and obtaining high-quality explanations. We propose a novel framework, Invariant Structure Learning (ISL), that is designed to improve causal structure discovery by utilizing generalization as an indication. ISL splits the data into different environments, and learns a structure that is invariant to the target across different environments by imposing a consistency constraint. An aggregation mechanism then selects the optimal classifier based on a graph structure that reflects the causal mechanisms in the data more accurately compared to the structures learnt from individual environments. Furthermore, we extend ISL to a self-supervised learning setting where accurate causal structure discovery does not rely on any labels. This self-supervised ISL utilizes invariant causality proposals by iteratively setting different nodes as targets. On synthetic and real-world datasets, we demonstrate that ISL accurately discovers the causal structure, outperforms alternative methods, and yields superior generalization for datasets with significant distribution shifts.

Jinsung Yoon, Raj Sinha, Sercan O Arik et al.

Embeddings from Large Language Models (LLMs) have emerged as critical components in various applications, particularly for information retrieval. While high-dimensional embeddings generally demonstrate superior performance as they contain more salient information, their practical application is frequently hindered by elevated computational latency and the associated higher cost. To address these challenges, we propose Matryoshka-Adaptor, a novel tuning framework designed for the customization of LLM embeddings. Matryoshka-Adaptor facilitates substantial dimensionality reduction while maintaining comparable performance levels, thereby achieving a significant enhancement in computational efficiency and cost-effectiveness. Our framework directly modifies the embeddings from pre-trained LLMs which is designed to be seamlessly integrated with any LLM architecture, encompassing those accessible exclusively through black-box APIs. Also, it exhibits efficacy in both unsupervised and supervised learning settings. A rigorous evaluation conducted across a diverse corpus of English, multilingual, and multimodal datasets consistently reveals substantial gains with Matryoshka-Adaptor. Notably, with Google and OpenAI Embedding APIs, Matryoshka-Adaptor achieves a reduction in dimensionality ranging from two- to twelve-fold without compromising performance across multiple BEIR datasets.

Bowen Jin, Hansi Zeng, Zhenrui Yue et al.

Efficiently acquiring external knowledge and up-to-date information is essential for effective reasoning and text generation in large language models (LLMs). Prompting advanced LLMs with reasoning capabilities to use search engines during inference is often suboptimal, as the LLM might not fully possess the capability on how to interact optimally with the search engine. This paper introduces Search-R1, an extension of reinforcement learning (RL) for reasoning frameworks where the LLM learns to autonomously generate (multiple) search queries during step-by-step reasoning with real-time retrieval. Search-R1 optimizes LLM reasoning trajectories with multi-turn search interactions, leveraging retrieved token masking for stable RL training and a simple outcome-based reward function. Experiments on seven question-answering datasets show that Search-R1 improves performance by 41% (Qwen2.5-7B) and 20% (Qwen2.5-3B) over various RAG baselines under the same setting. This paper further provides empirical insights into RL optimization methods, LLM choices, and response length dynamics in retrieval-augmented reasoning. The code and model checkpoints are available at https://github.com/PeterGriffinJin/Search-R1.

Eunbyeol Cho, Min Jae Lee, Kyunghoon Hur et al.

Making the most use of abundant information in electronic health records (EHR) is rapidly becoming an important topic in the medical domain. Recent work presented a promising framework that embeds entire features in raw EHR data regardless of its form and medical code standards. The framework, however, only focuses on encoding EHR with minimal preprocessing and fails to consider how to learn efficient EHR representation in terms of computation and memory usage. In this paper, we search for a versatile encoder not only reducing the large data into a manageable size but also well preserving the core information of patients to perform diverse clinical tasks. We found that hierarchically structured Convolutional Neural Network (CNN) often outperforms the state-of-the-art model on diverse tasks such as reconstruction, prediction, and generation, even with fewer parameters and less training time. Moreover, it turns out that making use of the inherent hierarchy of EHR data can boost the performance of any kind of backbone models and clinical tasks performed. Through extensive experiments, we present concrete evidence to generalize our research findings into real-world practice. We give a clear guideline on building the encoder based on the research findings captured while exploring numerous settings.

Bowen Jin, Jinsung Yoon, Priyanka Kargupta et al.

Reinforcement learning (RL) has demonstrated strong potential in training large language models (LLMs) capable of complex reasoning for real-world problem solving. More recently, RL has been leveraged to create sophisticated LLM-based search agents that adeptly combine reasoning with search engine use. While the use of RL for training search agents is promising, the optimal design of such agents remains not fully understood. In particular, key factors -- such as (1) reward formulation, (2) the choice and characteristics of the underlying LLM, and (3) the role of the search engine in the RL process -- require further investigation. In this work, we conduct comprehensive empirical studies to systematically investigate these and offer actionable insights. We highlight several key findings: format rewards are effective in improving final performance, whereas intermediate retrieval rewards have limited impact; the scale and initialization of the LLM (general-purpose vs. reasoning-specialized) significantly influence RL outcomes; and the choice of search engine plays a critical role in shaping RL training dynamics and the robustness of the trained agent during inference. These establish important guidelines for successfully building and deploying LLM-based search agents in real-world applications. Code is available at https://github.com/PeterGriffinJin/Search-R1.

Jieun Han, Daniel Lee, Haneul Yoo et al.

Personalized learning has gained attention in English as a Foreign Language (EFL) education, where engagement and motivation play crucial roles in reading comprehension. We propose a novel approach to generating personalized English reading comprehension tests tailored to students' interests. We develop a structured content transcreation pipeline using OpenAI's gpt-4o, where we start with the RACE-C dataset, and generate new passages and multiple-choice reading comprehension questions that are linguistically similar to the original passages but semantically aligned with individual learners' interests. Our methodology integrates topic extraction, question classification based on Bloom's taxonomy, linguistic feature analysis, and content transcreation to enhance student engagement. We conduct a controlled experiment with EFL learners in South Korea to examine the impact of interest-aligned reading materials on comprehension and motivation. Our results show students learning with personalized reading passages demonstrate improved comprehension and motivation retention compared to those learning with non-personalized materials.

Dawei Zhu, Rui Meng, Jiefeng Chen et al.

Comprehending long visual documents, where information is distributed across extensive pages of text and visual elements, is a critical but challenging task for modern Vision-Language Models (VLMs). Existing approaches falter on a fundamental challenge: evidence localization. They struggle to retrieve relevant pages and overlook fine-grained details within visual elements, leading to limited performance and model hallucination. To address this, we propose DocLens, a tool-augmented multi-agent framework that effectively ``zooms in'' on evidence like a lens. It first navigates from the full document to specific visual elements on relevant pages, then employs a sampling-adjudication mechanism to generate a single, reliable answer. Paired with Gemini-2.5-Pro, DocLens achieves state-of-the-art performance on MMLongBench-Doc and FinRAGBench-V, surpassing even human experts. The framework's superiority is particularly evident on vision-centric and unanswerable queries, demonstrating the power of its enhanced localization capabilities.

Sarkar Snigdha Sarathi Das, Palash Goyal, Mihir Parmar et al.

Pre-trained Time Series Foundational Models (TSFMs) represent a significant advance, capable of forecasting diverse time series with complex characteristics, including varied seasonalities, trends, and long-range dependencies. Despite their primary goal of universal time series forecasting, their efficacy is far from uniform; divergent training protocols and data sources cause individual TSFMs to exhibit highly variable performance across different forecasting tasks, domains, and horizons. Leveraging this complementary expertise by arbitrating existing TSFM outputs presents a compelling strategy, yet this remains a largely unexplored area of research. In this paper, we conduct a thorough examination of how different TSFMs exhibit specialized performance profiles across various forecasting settings, and how we can effectively leverage this behavior in arbitration between different time series models. We specifically analyze how factors such as model selection and forecast horizon distribution can influence the efficacy of arbitration strategies. Based on this analysis, we propose Synapse, a novel arbitration framework for TSFMs. Synapse is designed to dynamically leverage a pool of TSFMs, assign and adjust predictive weights based on their relative, context-dependent performance, and construct a robust forecast distribution by adaptively sampling from the output quantiles of constituent models. Experimental results demonstrate that Synapse consistently outperforms other popular ensembling techniques as well as individual TSFMs, demonstrating Synapse's efficacy in time series forecasting.

Alireza Salemi, Mihir Parmar, Palash Goyal et al.

The rapid advancement of Large Language Models (LLMs) has opened new opportunities in data science, yet their practical deployment is often constrained by the challenge of discovering relevant data within large heterogeneous data lakes. Existing methods struggle with this: single-agent systems are quickly overwhelmed by large, heterogeneous files in the large data lakes, while multi-agent systems designed based on a master-slave paradigm depend on a rigid central controller for task allocation that requires precise knowledge of each sub-agent's capabilities. To address these limitations, we propose a novel multi-agent communication paradigm inspired by the blackboard architecture for traditional AI models. In this framework, a central agent posts requests to a shared blackboard, and autonomous subordinate agents -- either responsible for a partition of the data lake or general information retrieval -- volunteer to respond based on their capabilities. This design improves scalability and flexibility by eliminating the need for a central coordinator to have prior knowledge of all sub-agents' expertise. We evaluate our method on three benchmarks that require explicit data discovery: KramaBench and modified versions of DS-Bench and DA-Code to incorporate data discovery. Experimental results demonstrate that the blackboard architecture substantially outperforms baselines, including RAG and the master-slave multi-agent paradigm, achieving between 13% to 57% relative improvement in end-to-end task success and up to a 9% relative gain in F1 score for data discovery over the best-performing baselines across both proprietary and open-source LLMs. Our findings establish the blackboard paradigm as a scalable and generalizable communication framework for multi-agent systems.

Kihyuk Sohn, Chun-Liang Li, Jinsung Yoon et al.

We present a two-stage framework for deep one-class classification. We first learn self-supervised representations from one-class data, and then build one-class classifiers on learned representations. The framework not only allows to learn better representations, but also permits building one-class classifiers that are faithful to the target task. We argue that classifiers inspired by the statistical perspective in generative or discriminative models are more effective than existing approaches, such as a normality score from a surrogate classifier. We thoroughly evaluate different self-supervised representation learning algorithms under the proposed framework for one-class classification. Moreover, we present a novel distribution-augmented contrastive learning that extends training distributions via data augmentation to obstruct the uniformity of contrastive representations. In experiments, we demonstrate state-of-the-art performance on visual domain one-class classification benchmarks, including novelty and anomaly detection. Finally, we present visual explanations, confirming that the decision-making process of deep one-class classifiers is intuitive to humans. The code is available at https://github.com/google-research/deep_representation_one_class.

Han-Jun Choi, Hyunsung Kim, Minho Lee et al.

Multi-agent trajectory data collected from domains such as team sports often suffer from missing values due to various factors. While many imputation methods have been proposed for spatiotemporal data, they are not well-suited for multi-agent sports scenarios where player movements are highly dynamic and inter-agent interactions continuously evolve. To address these challenges, we propose MIDAS (Multi-agent Imputer with Derivative-Accumulating Self-ensemble), a framework that imputes multi-agent trajectories with high accuracy and physical plausibility. It jointly predicts positions, velocities, and accelerations through a Set Transformer-based neural network and generates alternative estimates by recursively accumulating predicted velocity and acceleration values. These predictions are then combined using a learnable weighted ensemble to produce final imputed trajectories. Experiments on three sports datasets demonstrate that MIDAS significantly outperforms existing baselines in both positional accuracy and physical plausibility. Lastly, we showcase use cases of MIDAS, such as approximating total distance and pass success probability, to highlight its applicability to practical downstream tasks that require complete tracking data.

Hongjin Su, Ruoxi Sun, Jinsung Yoon et al.

Autonomous agents powered by large language models (LLMs) have the potential to enhance human capabilities, assisting with digital tasks from sending emails to performing data analysis. The abilities of existing LLMs at such tasks are often hindered by the lack of high-quality agent data from the corresponding environments they interact with. We propose Learn-by-interact, a data-centric framework to adapt LLM agents to any given environments without human annotations. Learn-by-interact synthesizes trajectories of agent-environment interactions based on documentations, and constructs instructions by summarizing or abstracting the interaction histories, a process called backward construction. We assess the quality of our synthetic data by using them in both training-based scenarios and training-free in-context learning (ICL), where we craft innovative retrieval approaches optimized for agents. Extensive experiments on SWE-bench, WebArena, OSWorld and Spider2-V spanning across realistic coding, web, and desktop environments show the effectiveness of Learn-by-interact in various downstream agentic tasks -- baseline results are improved by up to 12.2\% for ICL with Claude-3.5 and 19.5\% for training with Codestral-22B. We further demonstrate the critical role of backward construction, which provides up to 14.0\% improvement for training. Our ablation studies demonstrate the efficiency provided by our synthesized data in ICL and the superiority of our retrieval pipeline over alternative approaches like conventional retrieval-augmented generation (RAG). We expect that Learn-by-interact will serve as a foundation for agent data synthesis as LLMs are increasingly deployed at real-world environments.

Sungwon Han, Jinsung Yoon, Sercan O Arik et al.

Large Language Models (LLMs), with their remarkable ability to tackle challenging and unseen reasoning problems, hold immense potential for tabular learning, that is vital for many real-world applications. In this paper, we propose a novel in-context learning framework, FeatLLM, which employs LLMs as feature engineers to produce an input data set that is optimally suited for tabular predictions. The generated features are used to infer class likelihood with a simple downstream machine learning model, such as linear regression and yields high performance few-shot learning. The proposed FeatLLM framework only uses this simple predictive model with the discovered features at inference time. Compared to existing LLM-based approaches, FeatLLM eliminates the need to send queries to the LLM for each sample at inference time. Moreover, it merely requires API-level access to LLMs, and overcomes prompt size limitations. As demonstrated across numerous tabular datasets from a wide range of domains, FeatLLM generates high-quality rules, significantly (10% on average) outperforming alternatives such as TabLLM and STUNT.

Bowen Jin, Jinsung Yoon, Zhen Qin et al.

Large Language Models (LLMs) have revolutionized artificial intelligence with capabilities in reasoning, coding, and communication, driving innovation across industries. Their true potential depends on effective alignment to ensure correct, trustworthy and ethical behavior, addressing challenges like misinformation, hallucinations, bias and misuse. While existing Reinforcement Learning (RL)-based alignment methods are notoriously complex, direct optimization approaches offer a simpler alternative. In this work, we introduce a novel direct optimization approach for LLM alignment by drawing on established Information Retrieval (IR) principles. We present a systematic framework that bridges LLM alignment and IR methodologies, mapping LLM generation and reward models to IR's retriever-reranker paradigm. Building on this foundation, we propose LLM Alignment as Retriever Preference Optimization (LarPO), a new alignment method that enhances overall alignment quality. Extensive experiments validate LarPO's effectiveness with 38.9 % and 13.7 % averaged improvement on AlpacaEval2 and MixEval-Hard respectively. Our work opens new avenues for advancing LLM alignment by integrating IR foundations, offering a promising direction for future research.

Zhenrui Yue, Bowen Jin, Huimin Zeng et al. · deepmind

Recent advances in large language models (LLMs) have introduced latent reasoning as a promising alternative to autoregressive reasoning. By performing internal computation with hidden states from previous steps, latent reasoning benefit from more informative features rather than sampling a discrete chain-of-thought (CoT) path. Yet latent reasoning approaches are often incompatible with LLMs, as their continuous paradigm conflicts with the discrete nature of autoregressive generation. Moreover, these methods rely on CoT traces for training and thus fail to exploit the inherent reasoning patterns of LLMs. In this work, we explore latent reasoning by leveraging the intrinsic capabilities of LLMs via reinforcement learning (RL). To this end, we introduce hybrid reasoning policy optimization (HRPO), an RL-based hybrid latent reasoning approach that (1) integrates prior hidden states into sampled tokens with a learnable gating mechanism, and (2) initializes training with predominantly token embeddings while progressively incorporating more hidden features. This design maintains LLMs' generative capabilities and incentivizes hybrid reasoning using both discrete and continuous representations. In addition, the hybrid HRPO introduces stochasticity into latent reasoning via token sampling, thereby enabling RL-based optimization without requiring CoT trajectories. Extensive evaluations across diverse benchmarks show that HRPO outperforms prior methods in both knowledge- and reasoning-intensive tasks. Furthermore, HRPO-trained LLMs remain interpretable and exhibit intriguing behaviors like cross-lingual patterns and shorter completion lengths, highlighting the potential of our RL-based approach and offer insights for future work in latent reasoning.

Jihye Choi, Jinsung Yoon, Jiefeng Chen et al.

While Large Language Models (LLMs) have shown remarkable advancements in reasoning and tool use, they often fail to generate optimal, grounded solutions under complex constraints. Real-world travel planning exemplifies these challenges, evaluating agents' abilities to handle constraints that are explicit, implicit, and even evolving based on interactions with dynamic environments and user needs. In this paper, we present ATLAS, a general multi-agent framework designed to effectively handle such complex nature of constraints awareness in real-world travel planning tasks. ATLAS introduces a principled approach to address the fundamental challenges of constraint-aware planning through dedicated mechanisms for dynamic constraint management, iterative plan critique, and adaptive interleaved search. ATLAS demonstrates state-of-the-art performance on the TravelPlanner benchmark, improving the final pass rate from 23.3% to 44.4% over its best alternative. More importantly, our work is the first to demonstrate quantitative effectiveness on real-world travel planning tasks with live information search and multi-turn feedback. In this realistic setting, ATLAS showcases its superior overall planning performance, achieving an 84% final pass rate which significantly outperforms baselines including ReAct (59%) and a monolithic agent (27%).

Youngjun Sim, Jinsung Yoon, Wooyeol Jeong et al.

Zero-shot voice conversion is a technique that alters the speaker identity of an input speech to match a target speaker using only a single reference utterance, without requiring additional training. Recent approaches extensively utilize self-supervised learning features with K-means quantization to extract high-quality content representations while removing speaker identity. However, this quantization process also eliminates fine-grained phonetic and prosodic variations, degrading intelligibility and prosody preservation. While prior works have primarily focused on quantized representations, quantization residuals remain underutilized and deserve further exploration. In this paper, we introduce a novel approach that fully utilizes quantization residuals by leveraging temporal properties of speech components. This facilitates the disentanglement of speaker identity and the recovery of phonetic and prosodic details lost during quantization. By applying only K-means quantization and linear projections, our method achieves simple yet effective disentanglement, without requiring complex architectures or explicit supervision. This allows for high-fidelity voice conversion trained solely with reconstruction losses. Experiments show that the proposed model outperforms existing methods across both subjective and objective metrics. It achieves superior intelligibility and speaker similarity, along with improved prosody preservation, highlighting the impact of our Linear Disentangler module.

Zichen Chen, Jiefeng Chen, Sercan Ö. Arik et al.

Deep research has revolutionized data analysis, yet data scientists still devote substantial time to manually crafting visualizations, highlighting the need for robust automation from natural language queries. However, current systems struggle with complex datasets containing multiple files and iterative refinement. Existing approaches, including simple single- or multi-agent systems, often oversimplify the task, focusing on initial query parsing while failing to robustly manage data complexity, code errors, or final visualization quality. In this paper, we reframe this challenge as a collaborative multi-agent problem. We introduce CoDA, a multi-agent system that employs specialized LLM agents for metadata analysis, task planning, code generation, and self-reflection. We formalize this pipeline, demonstrating how metadata-focused analysis bypasses token limits and quality-driven refinement ensures robustness. Extensive evaluations show CoDA achieves substantial gains in the overall score, outperforming competitive baselines by up to 41.5%. This work demonstrates that the future of visualization automation lies not in isolated code generation but in integrated, collaborative agentic workflows.

Yongchao Chen, Jiefeng Chen, Rui Meng et al.

While integrating tools like Code Interpreter and Search has significantly enhanced Large Language Model (LLM) reasoning in models like ChatGPT Agent and Gemini-Pro, practical guidance on optimal tool use is lacking. The core challenge is effectively combining textual reasoning, coding, and search for diverse questions. In this paper, we propose Tool-Use Mixture (TUMIX), an ensemble framework that runs multiple agents in parallel, each employing distinct tool-use strategies and answer paths. Agents in TUMIX iteratively share and refine responses based on the question and previous answers. In experiments, TUMIX achieves significant gains over state-of-the-art tool-augmented and test-time scaling methods, delivering an average accuracy improvement of up to 3.55% over the best baseline on Gemini-2.5-Pro and Gemini-2.5-Flash across key reasoning benchmarks, with near-equal inference costs. We find that agent diversity and quality are crucial and can be enhanced by using LLMs to auto-optimize agent designs. Furthermore, TUMIX can halt refinement upon reaching sufficient confidence, preserving performance at only 49% of the inference cost. Further scaling can achieve higher performance, albeit at a greater cost.

Jinsung Yoon, Wooyeol Jeong, Jio Gim et al.

Emotional voice conversion (EVC) aims to modify the emotional style of speech while preserving its linguistic content. In practical EVC, controllability, the ability to independently control speaker identity and emotional style using distinct references, is crucial. However, existing methods often struggle to fully disentangle these attributes and lack the ability to model fine-grained emotional expressions such as temporal dynamics. We propose Maestro-EVC, a controllable EVC framework that enables independent control of content, speaker identity, and emotion by effectively disentangling each attribute from separate references. We further introduce a temporal emotion representation and an explicit prosody modeling with prosody augmentation to robustly capture and transfer the temporal dynamics of the target emotion, even under prosody-mismatched conditions. Experimental results confirm that Maestro-EVC achieves high-quality, controllable, and emotionally expressive speech synthesis.

Sungwon Han, Seungeon Lee, Meeyoung Cha et al.

Time series forecasting uses historical data to predict future trends, leveraging the relationships between past observations and available features. In this paper, we propose RAFT, a retrieval-augmented time series forecasting method to provide sufficient inductive biases and complement the model's learning capacity. When forecasting the subsequent time frames, we directly retrieve historical data candidates from the training dataset with patterns most similar to the input, and utilize the future values of these candidates alongside the inputs to obtain predictions. This simple approach augments the model's capacity by externally providing information about past patterns via retrieval modules. Our empirical evaluations on ten benchmark datasets show that RAFT consistently outperforms contemporary baselines with an average win ratio of 86%.

Hyunsung Kim, Gun-Hee Joe, Jinsung Yoon et al.

The analysis of high-intensity runs (or sprints) in soccer has long been a topic of interest for sports science researchers and practitioners. In particular, recent studies suggested contextualizing sprints based on their tactical purposes to better understand the physical-tactical requirements of modern match-play. However, they have a limitation in scalability, as human experts have to manually classify hundreds of sprints for every match. To address this challenge, this paper proposes a deep learning framework for automatically classifying sprints in soccer into contextual categories. The proposed model covers the permutation-invariant and sequential nature of multi-agent trajectories in soccer by deploying Set Transformers and a bidirectional GRU. We train the model with category labels made through the collaboration of human annotators and a rule-based classifier. Experimental results show that our model classifies sprints in the test dataset into 15 categories with the accuracy of 77.65%, implying the potential of the proposed framework for facilitating the integrated analysis of soccer sprints at scale.

Vishnu Suresh Lokhande, Kihyuk Sohn, Jinsung Yoon et al.

Learning invariant representations is an important requirement when training machine learning models that are driven by spurious correlations in the datasets. These spurious correlations, between input samples and the target labels, wrongly direct the neural network predictions resulting in poor performance on certain groups, especially the minority groups. Robust training against these spurious correlations requires the knowledge of group membership for every sample. Such a requirement is impractical in situations where the data labeling efforts for minority or rare groups are significantly laborious or where the individuals comprising the dataset choose to conceal sensitive information. On the other hand, the presence of such data collection efforts results in datasets that contain partially labeled group information. Recent works have tackled the fully unsupervised scenario where no labels for groups are available. Thus, we aim to fill the missing gap in the literature by tackling a more realistic setting that can leverage partially available sensitive or group information during training. First, we construct a constraint set and derive a high probability bound for the group assignment to belong to the set. Second, we propose an algorithm that optimizes for the worst-off group assignments from the constraint set. Through experiments on image and tabular datasets, we show improvements in the minority group's performance while preserving overall aggregate accuracy across groups.

Kihyuk Sohn, Jinsung Yoon, Chun-Liang Li et al.

We study anomaly clustering, grouping data into coherent clusters of anomaly types. This is different from anomaly detection that aims to divide anomalies from normal data. Unlike object-centered image clustering, anomaly clustering is particularly challenging as anomalous patterns are subtle and local. We present a simple yet effective clustering framework using a patch-based pretrained deep embeddings and off-the-shelf clustering methods. We define a distance function between images, each of which is represented as a bag of embeddings, by the Euclidean distance between weighted averaged embeddings. The weight defines the importance of instances (i.e., patch embeddings) in the bag, which may highlight defective regions. We compute weights in an unsupervised way or in a semi-supervised way when labeled normal data is available. Extensive experimental studies show the effectiveness of the proposed clustering framework along with a novel distance function upon exist-ing multiple instance or deep clustering frameworks. Over-all, our framework achieves 0.451 and 0.674 normalized mutual information scores on MVTec object and texture categories and further improve with a few labeled normal data (0.577, 0.669), far exceeding the baselines (0.244, 0.273) or state-of-the-art deep clustering methods (0.176, 0.277).

Hyunsung Kim, Jihun Kim, Dongwook Chung et al.

Although the values of individual soccer players have become astronomical, subjective judgments still play a big part in the player analysis. Recently, there have been new attempts to quantitatively grasp players' styles using video-based event stream data. However, they have some limitations in scalability due to high annotation costs and sparsity of event stream data. In this paper, we build a triplet network named 6MapNet that can effectively capture the movement styles of players using in-game GPS data. Without any annotation of soccer-specific actions, we use players' locations and velocities to generate two types of heatmaps. Our subnetworks then map these heatmap pairs into feature vectors whose similarity corresponds to the actual similarity of playing styles. The experimental results show that players can be accurately identified with only a small number of matches by our method.

Sungyong Seo, Sercan O. Arik, Jinsung Yoon et al.

We propose a novel training method that integrates rules into deep learning, in a way the strengths of the rules are controllable at inference. Deep Neural Networks with Controllable Rule Representations (DeepCTRL) incorporates a rule encoder into the model coupled with a rule-based objective, enabling a shared representation for decision making. DeepCTRL is agnostic to data type and model architecture. It can be applied to any kind of rule defined for inputs and outputs. The key aspect of DeepCTRL is that it does not require retraining to adapt the rule strength -- at inference, the user can adjust it based on the desired operation point on accuracy vs. rule verification ratio. In real-world domains where incorporating rules is critical -- such as Physics, Retail and Healthcare -- we show the effectiveness of DeepCTRL in teaching rules for deep learning. DeepCTRL improves the trust and reliability of the trained models by significantly increasing their rule verification ratio, while also providing accuracy gains at downstream tasks. Additionally, DeepCTRL enables novel use cases such as hypothesis testing of the rules on data samples, and unsupervised adaptation based on shared rules between datasets.

Jinsung Yoon, Kihyuk Sohn, Chun-Liang Li et al.

Anomaly detection (AD), separating anomalies from normal data, has many applications across domains, from security to healthcare. While most previous works were shown to be effective for cases with fully or partially labeled data, that setting is in practice less common due to labeling being particularly tedious for this task. In this paper, we focus on fully unsupervised AD, in which the entire training dataset, containing both normal and anomalous samples, is unlabeled. To tackle this problem effectively, we propose to improve the robustness of one-class classification trained on self-supervised representations using a data refinement process. Our proposed data refinement approach is based on an ensemble of one-class classifiers (OCCs), each of which is trained on a disjoint subset of training data. Representations learned by self-supervised learning on the refined data are iteratively updated as the data refinement improves. We demonstrate our method on various unsupervised AD tasks with image and tabular data. With a 10% anomaly ratio on CIFAR-10 image data / 2.5% anomaly ratio on Thyroid tabular data, the proposed method outperforms the state-of-the-art one-class classifier by 6.3 AUC and 12.5 average precision / 22.9 F1-score.

Chun-Liang Li, Kihyuk Sohn, Jinsung Yoon et al.

We aim at constructing a high performance model for defect detection that detects unknown anomalous patterns of an image without anomalous data. To this end, we propose a two-stage framework for building anomaly detectors using normal training data only. We first learn self-supervised deep representations and then build a generative one-class classifier on learned representations. We learn representations by classifying normal data from the CutPaste, a simple data augmentation strategy that cuts an image patch and pastes at a random location of a large image. Our empirical study on MVTec anomaly detection dataset demonstrates the proposed algorithm is general to be able to detect various types of real-world defects. We bring the improvement upon previous arts by 3.1 AUCs when learning representations from scratch. By transfer learning on pretrained representations on ImageNet, we achieve a new state-of-theart 96.6 AUC. Lastly, we extend the framework to learn and extract representations from patches to allow localizing defective areas without annotations during training.

Sercan O. Arik, Chun-Liang Li, Jinsung Yoon et al.

We propose a novel approach that integrates machine learning into compartmental disease modeling to predict the progression of COVID-19. Our model is explainable by design as it explicitly shows how different compartments evolve and it uses interpretable encoders to incorporate covariates and improve performance. Explainability is valuable to ensure that the model's forecasts are credible to epidemiologists and to instill confidence in end-users such as policy makers and healthcare institutions. Our model can be applied at different geographic resolutions, and here we demonstrate it for states and counties in the United States. We show that our model provides more accurate forecasts, in metrics averaged across the entire US, than state-of-the-art alternatives, and that it provides qualitatively meaningful explanatory insights. Lastly, we analyze the performance of our model for different subgroups based on the subgroup distributions within the counties.

James Jordon, Daniel Jarrett, Jinsung Yoon et al.

The clinical time-series setting poses a unique combination of challenges to data modeling and sharing. Due to the high dimensionality of clinical time series, adequate de-identification to preserve privacy while retaining data utility is difficult to achieve using common de-identification techniques. An innovative approach to this problem is synthetic data generation. From a technical perspective, a good generative model for time-series data should preserve temporal dynamics, in the sense that new sequences respect the original relationships between high-dimensional variables across time. From the privacy perspective, the model should prevent patient re-identification by limiting vulnerability to membership inference attacks. The NeurIPS 2020 Hide-and-Seek Privacy Challenge is a novel two-tracked competition to simultaneously accelerate progress in tackling both problems. In our head-to-head format, participants in the synthetic data generation track (i.e. "hiders") and the patient re-identification track (i.e. "seekers") are directly pitted against each other by way of a new, high-quality intensive care time-series dataset: the AmsterdamUMCdb dataset. Ultimately, we seek to advance generative techniques for dense and high-dimensional temporal data streams that are (1) clinically meaningful in terms of fidelity and predictivity, as well as (2) capable of minimizing membership privacy risks in terms of the concrete notion of patient re-identification.

Jinsung Yoon, Sercan O. Arik, Tomas Pfister

Understanding black-box machine learning models is crucial for their widespread adoption. Learning globally interpretable models is one approach, but achieving high performance with them is challenging. An alternative approach is to explain individual predictions using locally interpretable models. For locally interpretable modeling, various methods have been proposed and indeed commonly used, but they suffer from low fidelity, i.e. their explanations do not approximate the predictions well. In this paper, our goal is to push the state-of-the-art in high-fidelity locally interpretable modeling. We propose a novel framework, Locally Interpretable Modeling using Instance-wise Subsampling (LIMIS). LIMIS utilizes a policy gradient to select a small number of instances and distills the black-box model into a low-capacity locally interpretable model using those selected instances. Training is guided with a reward obtained directly by measuring the fidelity of the locally interpretable models. We show on multiple tabular datasets that LIMIS near-matches the prediction accuracy of black-box models, significantly outperforming state-of-the-art locally interpretable models in terms of fidelity and prediction accuracy.

Jinsung Yoon, Sercan O. Arik, Tomas Pfister

Quantifying the value of data is a fundamental problem in machine learning. Data valuation has multiple important use cases: (1) building insights about the learning task, (2) domain adaptation, (3) corrupted sample discovery, and (4) robust learning. To adaptively learn data values jointly with the target task predictor model, we propose a meta learning framework which we name Data Valuation using Reinforcement Learning (DVRL). We employ a data value estimator (modeled by a deep neural network) to learn how likely each datum is used in training of the predictor model. We train the data value estimator using a reinforcement signal of the reward obtained on a small validation set that reflects performance on the target task. We demonstrate that DVRL yields superior data value estimates compared to alternative methods across different types of datasets and in a diverse set of application scenarios. The corrupted sample discovery performance of DVRL is close to optimal in many regimes (i.e. as if the noisy samples were known apriori), and for domain adaptation and robust learning DVRL significantly outperforms state-of-the-art by 14.6% and 10.8%, respectively.

Jinsung Yoon, James Jordon, Mihaela van der Schaar

Deciding what and when to observe is critical when making observations is costly. In a medical setting where observations can be made sequentially, making these observations (or not) should be an active choice. We refer to this as the active sensing problem. In this paper, we propose a novel deep learning framework, which we call ASAC (Active Sensing using Actor-Critic models) to address this problem. ASAC consists of two networks: a selector network and a predictor network. The selector network uses previously selected observations to determine what should be observed in the future. The predictor network uses the observations selected by the selector network to predict a label, providing feedback to the selector network (well-selected variables should be predictive of the label). The goal of the selector network is then to select variables that balance the cost of observing the selected variables with their predictive power; we wish to preserve the conditional label distribution. During training, we use the actor-critic models to allow the loss of the selector to be "back-propagated" through the sampling process. The selector network "acts" by selecting future observations to make. The predictor network acts as a "critic" by feeding predictive errors for the selected variables back to the selector network. In our experiments, we show that ASAC significantly outperforms state-of-the-arts in two real-world medical datasets.

Daniel Jarrett, Jinsung Yoon, Mihaela van der Schaar

Accurate prediction of disease trajectories is critical for early identification and timely treatment of patients at risk. Conventional methods in survival analysis are often constrained by strong parametric assumptions and limited in their ability to learn from high-dimensional data, while existing neural network models are not readily-adapted to the longitudinal setting. This paper develops a novel convolutional approach that addresses these drawbacks. We present MATCH-Net: a Missingness-Aware Temporal Convolutional Hitting-time Network, designed to capture temporal dependencies and heterogeneous interactions in covariate trajectories and patterns of missingness. To the best of our knowledge, this is the first investigation of temporal convolutions in the context of dynamic prediction for personalized risk prognosis. Using real-world data from the Alzheimer's Disease Neuroimaging Initiative, we demonstrate state-of-the-art performance without making any assumptions regarding underlying longitudinal or time-to-event processes attesting to the model's potential utility in clinical decision support.

Carl Rietschel, Jinsung Yoon, Mihaela van der Schaar

Deep learning models for survival analysis have gained significant attention in the literature, but they suffer from severe performance deficits when the dataset contains many irrelevant features. We give empirical evidence for this problem in real-world medical settings using the state-of-the-art model DeepHit. Furthermore, we develop methods to improve the deep learning model through novel approaches to feature selection in survival analysis. We propose filter methods for hard feature selection and a neural network architecture that weights features for soft feature selection. Our experiments on two real-world medical datasets demonstrate that substantial performance improvements against the original models are achievable.

James Jordon, Jinsung Yoon, Mihaela van der Schaar

Machine learning has the potential to assist many communities in using the large datasets that are becoming more and more available. Unfortunately, much of that potential is not being realized because it would require sharing data in a way that compromises privacy. In order to overcome this hurdle, several methods have been proposed that generate synthetic data while preserving the privacy of the real data. In this paper we consider a key characteristic that synthetic data should have in order to be useful for machine learning researchers - the relative performance of two algorithms (trained and tested) on the synthetic dataset should be the same as their relative performance (when trained and tested) on the original dataset.

Jinsung Yoon, James Jordon, Mihaela van der Schaar

We propose a novel method for imputing missing data by adapting the well-known Generative Adversarial Nets (GAN) framework. Accordingly, we call our method Generative Adversarial Imputation Nets (GAIN). The generator (G) observes some components of a real data vector, imputes the missing components conditioned on what is actually observed, and outputs a completed vector. The discriminator (D) then takes a completed vector and attempts to determine which components were actually observed and which were imputed. To ensure that D forces G to learn the desired distribution, we provide D with some additional information in the form of a hint vector. The hint reveals to D partial information about the missingness of the original sample, which is used by D to focus its attention on the imputation quality of particular components. This hint ensures that G does in fact learn to generate according to the true data distribution. We tested our method on various datasets and found that GAIN significantly outperforms state-of-the-art imputation methods.

Jinsung Yoon, James Jordon, Mihaela van der Schaar

Training complex machine learning models for prediction often requires a large amount of data that is not always readily available. Leveraging these external datasets from related but different sources is therefore an important task if good predictive models are to be built for deployment in settings where data can be rare. In this paper we propose a novel approach to the problem in which we use multiple GAN architectures to learn to translate from one dataset to another, thereby allowing us to effectively enlarge the target dataset, and therefore learn better predictive models than if we simply used the target dataset. We show the utility of such an approach, demonstrating that our method improves the prediction performance on the target domain over using just the target dataset and also show that our framework outperforms several other benchmarks on a collection of real-world medical datasets.

Jinsung Yoon, William R. Zame, Mihaela van der Schaar

Missing data is a ubiquitous problem. It is especially challenging in medical settings because many streams of measurements are collected at different - and often irregular - times. Accurate estimation of those missing measurements is critical for many reasons, including diagnosis, prognosis and treatment. Existing methods address this estimation problem by interpolating within data streams or imputing across data streams (both of which ignore important information) or ignoring the temporal aspect of the data and imposing strong assumptions about the nature of the data-generating process and/or the pattern of missing data (both of which are especially problematic for medical data). We propose a new approach, based on a novel deep learning architecture that we call a Multi-directional Recurrent Neural Network (M-RNN) that interpolates within data streams and imputes across data streams. We demonstrate the power of our approach by applying it to five real-world medical datasets. We show that it provides dramatically improved estimation of missing measurements in comparison to 11 state-of-the-art benchmarks (including Spline and Cubic Interpolations, MICE, MissForest, matrix completion and several RNN methods); typical improvements in Root Mean Square Error are between 35% - 50%. Additional experiments based on the same five datasets demonstrate that the improvements provided by our method are extremely robust.