Sikun Yang

h-index3
2papers
43citations

2 Papers

1.2SIFeb 29, 2024
Scaling up Dynamic Edge Partition Models via Stochastic Gradient MCMC

Sikun Yang, Heinz Koeppl

The edge partition model (EPM) is a generative model for extracting an overlapping community structure from static graph-structured data. In the EPM, the gamma process (GaP) prior is adopted to infer the appropriate number of latent communities, and each vertex is endowed with a gamma distributed positive memberships vector. Despite having many attractive properties, inference in the EPM is typically performed using Markov chain Monte Carlo (MCMC) methods that prevent it from being applied to massive network data. In this paper, we generalize the EPM to account for dynamic enviroment by representing each vertex with a positive memberships vector constructed using Dirichlet prior specification, and capturing the time-evolving behaviour of vertices via a Dirichlet Markov chain construction. A simple-to-implement Gibbs sampler is proposed to perform posterior computation using Negative- Binomial augmentation technique. For large network data, we propose a stochastic gradient Markov chain Monte Carlo (SG-MCMC) algorithm for scalable inference in the proposed model. The experimental results show that the novel methods achieve competitive performance in terms of link prediction, while being much faster.

2.2LGSep 10, 2018Code
Collapsed Variational Inference for Nonparametric Bayesian Group Factor Analysis

Sikun Yang, Heinz Koeppl

Group factor analysis (GFA) methods have been widely used to infer the common structure and the group-specific signals from multiple related datasets in various fields including systems biology and neuroimaging. To date, most available GFA models require Gibbs sampling or slice sampling to perform inference, which prevents the practical application of GFA to large-scale data. In this paper we present an efficient collapsed variational inference (CVI) algorithm for the nonparametric Bayesian group factor analysis (NGFA) model built upon an hierarchical beta Bernoulli process. Our CVI algorithm proceeds by marginalizing out the group-specific beta process parameters, and then approximating the true posterior in the collapsed space using mean field methods. Experimental results on both synthetic and real-world data demonstrate the effectiveness of our CVI algorithm for the NGFA compared with state-of-the-art GFA methods.