Arshia Afzal

MohammadAli Shaeri, Arshia Afzal, Mahsa Shoaran

Neuroscience and neurotechnology are currently being revolutionized by artificial intelligence (AI) and machine learning. AI is widely used to study and interpret neural signals (analytical applications), assist people with disabilities (prosthetic applications), and treat underlying neurological symptoms (therapeutic applications). In this brief, we will review the emerging opportunities of on-chip AI for the next-generation implantable brain-machine interfaces (BMIs), with a focus on state-of-the-art prosthetic BMIs. Major technological challenges for the effectiveness of AI models will be discussed. Finally, we will present algorithmic and IC design solutions to enable a new generation of AI-enhanced and high-channel-count BMIs.

Leyla Naz Candogan, Arshia Afzal, Pol Puigdemont et al.

Though Vision Transformers (ViTs) have become the dominant backbone in many computer vision tasks, due to permutation equivariance, their attention mechanism lacks explicit spatial inductive biases. This become particularly important in two settings: when model capacity is small or training data is limited. Inspired by the attention masking strategies in Linear Transformers and the scanning patterns of Vision SSMs, we introduce VIOLIN, a lightweight masked attention mechanism that encodes spatial structure within attention via Space Filling Curves (SFCs) with less than 0.0015% extra parameters and negligible computational overhead. VIOLIN scans the image using multiple SFCs to construct curve-specific decay masks, which are then combined and multiplied with the attention matrix. Across a wide range of evaluations, VIOLIN consistently improves performance. In limited data regimes such as fine-tuning on VTAB-1K, it boosts accuracy across all task groups and by up to 8.7% on the tasks where spatial information is essential. It can be combined with parameter-efficient fine-tuning methods such as LoRA to further increase the performance. Beyond fine-tuning, VIOLIN improves various small scale ViT architectures (e.g., DeiT, DINO) during pretraining on ImageNet-1K. Additionally, on pixel-level CIFAR-100 training, a task that is highly dependent on location information, VIOLIN increases accuracy by up to 7.2%. Overall, VIOLIN provides a computationally efficient yet effective way to inject spatial inductive bias into ViTs, especially benefiting small models and limited data settings.

Arshia Afzal, Elias Abad Rocamora, Leyla Naz Candogan et al.

Linear Transformers and State Space Models have emerged as efficient alternatives to softmax Transformers for causal sequence modeling, enabling parallel training via matrix multiplication and efficient RNN-style inference. However, despite their success in causal tasks, no unified framework exists for applying Linear Transformers to bidirectional sequence modeling. We introduce LION, the first framework to systematically extend Linear Transformers to the bidirectional setting. LION generalizes three core representations commonly used in the causal case - full Linear Attention , bidirectional RNN, and chunkwise parallel form - to the bidirectional setting. These forms are theoretically equivalent and enable models to exploit the strengths of each during training and inference. We prove that a broad class of Linear Transformers can be extended using LION and validate our framework via three core examples based on the choice of decay type: LION-LIT, the bidirectional extension of arXiv:2006.16236; LION-D, based on arXiv:2307.08621; and LION-S, a variant using selective decay arXiv:2103.02143, arXiv:2312.0075. Across standard bidirectional tasks, LION enables models to match or exceed the performance of softmax Transformers, while offering significantly faster training and more efficient inference than existing State Space Models.

Sajad Movahedi, Timur Carstensen, Arshia Afzal et al.

Position information is essential for language modeling. In softmax transformers, Rotary Position Embeddings (\textit{RoPE}) encode positions through \textit{fixed-angle} rotations, while in linear transformers, order is handled via input-dependent (selective) gating that decays past key-value associations. Selectivity has generally been shown to improve language-related tasks. Inspired by this, we introduce \textit{Selective RoPE}, an \textit{input-dependent} rotary embedding mechanism, that generalizes \textit{RoPE}, and enables rotation in \textit{arbitrary angles} for both linear and softmax transformers. We show that softmax attention already performs a hidden form of these rotations on query-key pairs, uncovering an implicit positional structure. We further show that in state-space models and gated linear transformers, the real part manages forgetting while the imaginary part encodes positions through rotations. We validate our method by equipping gated transformers with \textit{Selective RoPE}, demonstrating that its input-dependent rotations improve performance in language modeling and on difficult sequence tasks like copying, state tracking, and retrieval.

Arshia Afzal, Volkan Cevher, Mahsa Shoaran

Enhancing the accuracy and efficiency of machine learning algorithms employed in neural interface systems is crucial for advancing next-generation intelligent therapeutic devices. However, current systems often utilize basic machine learning models that do not fully exploit the natural structure of brain signals. Additionally, existing learning models used for neural signal processing often demonstrate low speed and efficiency during inference. To address these challenges, this study introduces Micro Tree-based NAM (MT-NAM), a distilled model based on the recently proposed Neural Additive Models (NAM). The MT-NAM achieves a remarkable 100$\times$ improvement in inference speed compared to standard NAM, without compromising accuracy. We evaluate our approach on the CHB-MIT scalp EEG dataset, which includes recordings from 24 patients with varying numbers of sessions and seizures. NAM achieves an 85.3\% window-based sensitivity and 95\% specificity. Interestingly, our proposed MT-NAM shows only a 2\% reduction in sensitivity compared to the original NAM. To regain this sensitivity, we utilize a test-time template adjuster (T3A) as an update mechanism, enabling our model to achieve higher sensitivity during test time by accommodating transient shifts in neural signals. With this online update approach, MT-NAM achieves the same sensitivity as the standard NAM while achieving approximately 50$\times$ acceleration in inference speed.

Arshia Afzal, Grigorios Chrysos, Volkan Cevher et al.

EEG-based seizure detection models face challenges in terms of inference speed and memory efficiency, limiting their real-time implementation in clinical devices. This paper introduces a novel graph-based residual state update mechanism (REST) for real-time EEG signal analysis in applications such as epileptic seizure detection. By leveraging a combination of graph neural networks and recurrent structures, REST efficiently captures both non-Euclidean geometry and temporal dependencies within EEG data. Our model demonstrates high accuracy in both seizure detection and classification tasks. Notably, REST achieves a remarkable 9-fold acceleration in inference speed compared to state-of-the-art models, while simultaneously demanding substantially less memory than the smallest model employed for this task. These attributes position REST as a promising candidate for real-time implementation in clinical devices, such as Responsive Neurostimulation or seizure alert systems.