Danyal Rehman

Grégoire Mialon, Quentin Garrido, Hannah Lawrence et al.

Machine learning for differential equations paves the way for computationally efficient alternatives to numerical solvers, with potentially broad impacts in science and engineering. Though current algorithms typically require simulated training data tailored to a given setting, one may instead wish to learn useful information from heterogeneous sources, or from real dynamical systems observations that are messy or incomplete. In this work, we learn general-purpose representations of PDEs from heterogeneous data by implementing joint embedding methods for self-supervised learning (SSL), a framework for unsupervised representation learning that has had notable success in computer vision. Our representation outperforms baseline approaches to invariant tasks, such as regressing the coefficients of a PDE, while also improving the time-stepping performance of neural solvers. We hope that our proposed methodology will prove useful in the eventual development of general-purpose foundation models for PDEs. Code: https://github.com/facebookresearch/SSLForPDEs.

Danyal Rehman, John H. Lienhard

Continuum models for ion transport through polyamide nanopores require solving partial differential equations (PDEs) through complex pore geometries. Resolving spatiotemporal features at this length and time-scale can make solving these equations computationally intractable. In addition, mechanistic models frequently require functional relationships between ion interaction parameters under nano-confinement, which are often too challenging to measure experimentally or know a priori. In this work, we develop the first physics-informed deep learning model to learn ion transport behaviour across polyamide nanopores. The proposed architecture leverages neural differential equations in conjunction with classical closure models as inductive biases directly encoded into the neural framework. The neural differential equations are pre-trained on simulated data from continuum models and fine-tuned on independent experimental data to learn ion rejection behaviour. Gaussian noise augmentations from experimental uncertainty estimates are also introduced into the measured data to improve model generalization. Our approach is compared to other physics-informed deep learning models and shows strong agreement with experimental measurements across all studied datasets.

Danyal Rehman, Charlie B. Tan, Yoshua Bengio et al.

Efficient sampling of molecular systems at thermodynamic equilibrium is a hallmark challenge in statistical physics. This challenge has driven the development of Boltzmann Generators (BGs), which allow rapid generation of uncorrelated equilibrium samples by combining a generative model with exact likelihoods and an importance sampling correction. However, modern BGs predominantly rely on normalizing flows (NFs), which either suffer from limited expressivity due to strict invertibility constraints (discrete time) or computationally expensive likelihoods (continuous time). In this paper, we propose Autoregressive Boltzmann Generators (ArBG) -- a novel autoregressive modelling framework -- that overcomes these limitations by departing from the flow-based BG paradigm. ArBG circumvents the topological constraints of flows and enables sequential inference-time interventions, while offering enhanced scalability by leveraging architectures effective in Large Language Models. We empirically demonstrate that ArBG leads to significant improvements over flow-based models across all benchmarks, but particularly in larger peptide systems such as the 10-residue Chignolin. Furthermore, we introduce Robin, a 132 million parameter transferable model trained with the ArBG framework which improves over the previous state-of-the-art, reducing the zero-shot energy error, E-W$_2$, on 8-residue systems by over 60$\%$. The code can be found at the following link: https://github.com/danyalrehman/autobg.

Danyal Rehman, John H. Lienhard

Species transport models typically combine partial differential equations (PDEs) with relations from hindered transport theory to quantify electromigrative, convective, and diffusive transport through complex nanoporous systems; however, these formulations are frequently substantial simplifications of the governing dynamics, leading to the poor generalization performance of PDE-based models. Given the growing interest in deep learning methods for the physical sciences, we develop a machine learning-based approach to characterize ion transport across nanoporous membranes. Our proposed framework centers around attention-enhanced neural differential equations that incorporate electroneutrality-based inductive biases to improve generalization performance relative to conventional PDE-based methods. In addition, we study the role of the attention mechanism in illuminating physically-meaningful ion-pairing relationships across diverse mixture compositions. Further, we investigate the importance of pre-training on simulated data from PDE-based models, as well as the performance benefits from hard vs. soft inductive biases. Our results indicate that physics-informed deep learning solutions can outperform their classical PDE-based counterparts and provide promising avenues for modelling complex transport phenomena across diverse applications.