Hui Liu

Han Xu, Jie Ren, Pengfei He et al.

ChatGPT is one of the most popular language models which achieve amazing performance on various natural language tasks. Consequently, there is also an urgent need to detect the texts generated ChatGPT from human written. One of the extensively studied methods trains classification models to distinguish both. However, existing studies also demonstrate that the trained models may suffer from distribution shifts (during test), i.e., they are ineffective to predict the generated texts from unseen language tasks or topics. In this work, we aim to have a comprehensive investigation on these methods' generalization behaviors under distribution shift caused by a wide range of factors, including prompts, text lengths, topics, and language tasks. To achieve this goal, we first collect a new dataset with human and ChatGPT texts, and then we conduct extensive studies on the collected dataset. Our studies unveil insightful findings which provide guidance for developing future methodologies or data collection strategies for ChatGPT detection.

Xinyue Wang, Yuheng Jia, Hui Liu et al.

Typical deep clustering methods, while achieving notable progress, can only provide one clustering result per dataset. This limitation arises from their assumption of a fixed underlying data distribution, which may fail to meet user needs and provide unsatisfactory clustering outcomes. Our work investigates how multi-modal large language models (MLLMs) can be leveraged to achieve user-driven clustering, emphasizing their adaptability to user-specified semantic requirements. However, directly using MLLM output for clustering has risks for producing unstructured and generic image descriptions instead of feature-specific and concrete ones. To address these issues, our method first discovers that MLLMs' hidden states of text tokens are strongly related to the corresponding features, and leverages these embeddings to perform clusterings from any user-defined criteria. We also employ a lightweight clustering head augmented with pseudo-label learning, significantly enhancing clustering accuracy. Extensive experiments demonstrate its competitive performance on diverse datasets and metrics.

Fuchao Yang, Jianhong Cheng, Hui Liu et al.

In partial label learning (PLL), every sample is associated with a candidate label set comprising the ground-truth label and several noisy labels. The conventional PLL assumes the noisy labels are randomly generated (instance-independent), while in practical scenarios, the noisy labels are always instance-dependent and are highly related to the sample features, leading to the instance-dependent partial label learning (IDPLL) problem. Instance-dependent noisy label is a double-edged sword. On one side, it may promote model training as the noisy labels can depict the sample to some extent. On the other side, it brings high label ambiguity as the noisy labels are quite undistinguishable from the ground-truth label. To leverage the nuances of IDPLL effectively, for the first time we create class-wise embeddings for each sample, which allow us to explore the relationship of instance-dependent noisy labels, i.e., the class-wise embeddings in the candidate label set should have high similarity, while the class-wise embeddings between the candidate label set and the non-candidate label set should have high dissimilarity. Moreover, to reduce the high label ambiguity, we introduce the concept of class prototypes containing global feature information to disambiguate the candidate label set. Extensive experimental comparisons with twelve methods on six benchmark data sets, including four fine-grained data sets, demonstrate the effectiveness of the proposed method. The code implementation is publicly available at https://github.com/Yangfc-ML/CEL.

Wei Huang, Aichun Zhu, Hui Liu

Phenotype-based screening has attracted much attention for identifying cell-active compounds. Transcriptional and proteomic profiles of cell population or single cells are informative phenotypic measures of cellular responses to perturbations. In this paper, we proposed a deep learning framework based on encoder-decoder architecture that maps the initial cellular states to a latent space, in which we assume the effects of drug perturbation on cellular states follow linear additivity. Next, we introduced the cycle consistency constraints to enforce that initial cellular state subjected to drug perturbations would produce the perturbed cellular responses, and, conversely, removal of drug perturbation from the perturbed cellular states would restore the initial cellular states. The cycle consistency constraints and linear modeling in latent space enable to learn interpretable and transferable drug perturbation representations, so that our model can predict cellular response to unseen drugs. We validated our model on three different types of datasets, including bulk transcriptional responses, bulk proteomic responses, and single-cell transcriptional responses to drug perturbations. The experimental results show that our model achieves better performance than existing state-of-the-art methods.

Yuheng Jia, Jianhong Cheng, Hui Liu et al.

Deep clustering has exhibited remarkable performance; however, the over confidence problem, i.e., the estimated confidence for a sample belonging to a particular cluster greatly exceeds its actual prediction accuracy, has been over looked in prior research. To tackle this critical issue, we pioneer the development of a calibrated deep clustering framework. Specifically, we propose a novel dual head (calibration head and clustering head) deep clustering model that can effectively calibrate the estimated confidence and the actual accuracy. The calibration head adjusts the overconfident predictions of the clustering head, generating prediction confidence that matches the model learning status. Then, the clustering head dynamically selects reliable high-confidence samples estimated by the calibration head for pseudo-label self-training. Additionally, we introduce an effective network initialization strategy that enhances both training speed and network robustness. The effectiveness of the proposed calibration approach and initialization strategy are both endorsed with solid theoretical guarantees. Extensive experiments demonstrate the proposed calibrated deep clustering model not only surpasses the state-of-the-art deep clustering methods by 5x on average in terms of expected calibration error, but also significantly outperforms them in terms of clustering accuracy. The code is available at https://github.com/ChengJianH/CDC.

Lei Wang, Yi Hu, Jiabang He et al.

Large Language Models (LLMs) have recently demonstrated exceptional performance in various Natural Language Processing (NLP) tasks. They have also shown the ability to perform chain-of-thought (CoT) reasoning to solve complex problems. Recent studies have explored CoT reasoning in complex multimodal scenarios, such as the science question answering task, by fine-tuning multimodal models with high-quality human-annotated CoT rationales. However, collecting high-quality COT rationales is usually time-consuming and costly. Besides, the annotated rationales are hardly accurate due to the external essential information missed. To address these issues, we propose a novel method termed T-SciQ that aims at teaching science question answering with LLM signals. The T-SciQ approach generates high-quality CoT rationales as teaching signals and is advanced to train much smaller models to perform CoT reasoning in complex modalities. Additionally, we introduce a novel data mixing strategy to produce more effective teaching data samples for simple and complex science question answer problems. Extensive experimental results show that our T-SciQ method achieves a new state-of-the-art performance on the ScienceQA benchmark, with an accuracy of 96.18%. Moreover, our approach outperforms the most powerful fine-tuned baseline by 4.5%. The code is publicly available at https://github.com/T-SciQ/T-SciQ.

Bei Li, Ziyang Wang, Hui Liu et al.

Recently, deep models have shown tremendous improvements in neural machine translation (NMT). However, systems of this kind are computationally expensive and memory intensive. In this paper, we take a natural step towards learning strong but light-weight NMT systems. We proposed a novel group-permutation based knowledge distillation approach to compressing the deep Transformer model into a shallow model. The experimental results on several benchmarks validate the effectiveness of our method. Our compressed model is 8X shallower than the deep model, with almost no loss in BLEU. To further enhance the teacher model, we present a Skipping Sub-Layer method to randomly omit sub-layers to introduce perturbation into training, which achieves a BLEU score of 30.63 on English-German newstest2014. The code is publicly available at https://github.com/libeineu/GPKD.

Bei Li, Ziyang Wang, Hui Liu et al.

Deep encoders have been proven to be effective in improving neural machine translation (NMT) systems, but training an extremely deep encoder is time consuming. Moreover, why deep models help NMT is an open question. In this paper, we investigate the behavior of a well-tuned deep Transformer system. We find that stacking layers is helpful in improving the representation ability of NMT models and adjacent layers perform similarly. This inspires us to develop a shallow-to-deep training method that learns deep models by stacking shallow models. In this way, we successfully train a Transformer system with a 54-layer encoder. Experimental results on WMT'16 English-German and WMT'14 English-French translation tasks show that it is $1.4$ $\times$ faster than training from scratch, and achieves a BLEU score of $30.33$ and $43.29$ on two tasks. The code is publicly available at https://github.com/libeineu/SDT-Training/.

Wenqi Fan, Shijie Wang, Jiani Huang et al.

Graphs play an important role in representing complex relationships in various domains like social networks, knowledge graphs, and molecular discovery. With the advent of deep learning, Graph Neural Networks (GNNs) have emerged as a cornerstone in Graph Machine Learning (Graph ML), facilitating the representation and processing of graph structures. Recently, LLMs have demonstrated unprecedented capabilities in language tasks and are widely adopted in a variety of applications such as computer vision and recommender systems. This remarkable success has also attracted interest in applying LLMs to the graph domain. Increasing efforts have been made to explore the potential of LLMs in advancing Graph ML's generalization, transferability, and few-shot learning ability. Meanwhile, graphs, especially knowledge graphs, are rich in reliable factual knowledge, which can be utilized to enhance the reasoning capabilities of LLMs and potentially alleviate their limitations such as hallucinations and the lack of explainability. Given the rapid progress of this research direction, a systematic review summarizing the latest advancements for Graph ML in the era of LLMs is necessary to provide an in-depth understanding to researchers and practitioners. Therefore, in this survey, we first review the recent developments in Graph ML. We then explore how LLMs can be utilized to enhance the quality of graph features, alleviate the reliance on labeled data, and address challenges such as graph heterogeneity and out-of-distribution (OOD) generalization. Afterward, we delve into how graphs can enhance LLMs, highlighting their abilities to enhance LLM pre-training and inference. Furthermore, we investigate various applications and discuss the potential future directions in this promising field.

Ran Xu, Hui Liu, Sreyashi Nag et al.

Retrieval-augmented generation (RAG) enhances the question-answering (QA) abilities of large language models (LLMs) by integrating external knowledge. However, adapting general-purpose RAG systems to specialized fields such as science and medicine poses unique challenges due to distribution shifts and limited access to domain-specific data. To tackle this, we propose SimRAG, a self-training approach that equips the LLM with joint capabilities of question answering and question generation for domain adaptation. Our method first fine-tunes the LLM on instruction-following, question-answering, and search-related data. Then, it prompts the same LLM to generate diverse domain-relevant questions from unlabeled corpora, with an additional filtering strategy to retain high-quality synthetic examples. By leveraging these self-generated synthetic examples, the LLM can improve their performance on domain-specific RAG tasks. Experiments on 11 datasets, spanning two backbone sizes and three domains, demonstrate that SimRAG outperforms baselines by 1.2\%--8.6\%.

Li Ma, Haoyu Han, Juanhui Li et al.

Link prediction, which aims to forecast unseen connections in graphs, is a fundamental task in graph machine learning. Heuristic methods, leveraging a range of different pairwise measures such as common neighbors and shortest paths, often rival the performance of vanilla Graph Neural Networks (GNNs). Therefore, recent advancements in GNNs for link prediction (GNN4LP) have primarily focused on integrating one or a few types of pairwise information. In this work, we reveal that different node pairs within the same dataset necessitate varied pairwise information for accurate prediction and models that only apply the same pairwise information uniformly could achieve suboptimal performance. As a result, we propose a simple mixture of experts model Link-MoE for link prediction. Link-MoE utilizes various GNNs as experts and strategically selects the appropriate expert for each node pair based on various types of pairwise information. Experimental results across diverse real-world datasets demonstrate substantial performance improvement from Link-MoE. Notably, Link-MoE achieves a relative improvement of 18.71\% on the MRR metric for the Pubmed dataset and 9.59\% on the Hits@100 metric for the ogbl-ppa dataset, compared to the best baselines.

Jianxiang Zang, Hui Liu

Representation-based Siamese networks have risen to popularity in lightweight text matching due to their low deployment and inference costs. While word-level attention mechanisms have been implemented within Siamese networks to improve performance, we propose Feature Attention (FA), a novel downstream block designed to enrich the modeling of dependencies among embedding features. Employing "squeeze-and-excitation" techniques, the FA block dynamically adjusts the emphasis on individual features, enabling the network to concentrate more on features that significantly contribute to the final classification. Building upon FA, we introduce a dynamic "selection" mechanism called Selective Feature Attention (SFA), which leverages a stacked BiGRU Inception structure. The SFA block facilitates multi-scale semantic extraction by traversing different stacked BiGRU layers, encouraging the network to selectively concentrate on semantic information and embedding features across varying levels of abstraction. Both the FA and SFA blocks offer a seamless integration capability with various Siamese networks, showcasing a plug-and-play characteristic. Experimental evaluations conducted across diverse text matching baselines and benchmarks underscore the indispensability of modeling feature attention and the superiority of the "selection" mechanism.

Zhaoyang Wang, Jinqi Jiang, Tian Qiu et al.

Recent large reasoning models such as DeepSeek-R1 exhibit strong complex problems solving abilities by generating long chain-of-thought (CoT) reasoning steps. It is challenging to directly train small language models (SLMs) to emerge long CoT. Thus, distillation becomes a practical method to enable SLMs for such reasoning ability. However, the long CoT often contains a lot of redundant contents (e.g., overthinking steps) which may make SLMs hard to learn considering their relatively poor capacity and generalization. To address this issue, we propose a simple-yet-effective method to prune unnecessary steps in long CoT, and then employ an on-policy method for the SLM itself to curate valid and useful long CoT training data. In this way, SLMs can effectively learn efficient long CoT reasoning and preserve competitive performance at the same time. Experimental results across a series of mathematical reasoning benchmarks demonstrate the effectiveness of the proposed method in distilling long CoT reasoning ability into SLMs which maintains the competitive performance but significantly reduces generating redundant reasoning steps.

Kecheng Chen, Xinyu Luo, Tiexin Qin et al.

Foundation medical segmentation models, with MedSAM being the most popular, have achieved promising performance across organs and lesions. However, MedSAM still suffers from compromised performance on specific lesions with intricate structures and appearance, as well as bounding box prompt-induced perturbations. Although current test-time adaptation (TTA) methods for medical image segmentation may tackle this issue, partial (e.g., batch normalization) or whole parametric updates restrict their effectiveness due to limited update signals or catastrophic forgetting in large models. Meanwhile, these approaches ignore the computational complexity during adaptation, which is particularly significant for modern foundation models. To this end, our theoretical analyses reveal that directly refining image embeddings is feasible to approach the same goal as parametric updates under the MedSAM architecture, which enables us to realize high computational efficiency and segmentation performance without the risk of catastrophic forgetting. Under this framework, we propose to encourage maximizing factorized conditional probabilities of the posterior prediction probability using a proposed distribution-approximated latent conditional random field loss combined with an entropy minimization loss. Experiments show that we achieve about 3\% Dice score improvements across three datasets while reducing computational complexity by over 7 times.

Jie Ren, Yue Xing, Yingqian Cui et al.

Large language model (LLM) unlearning has become a critical topic in machine learning, aiming to eliminate the influence of specific training data or knowledge without retraining the model from scratch. A variety of techniques have been proposed, including Gradient Ascent, model editing, and re-steering hidden representations. While existing surveys often organize these methods by their technical characteristics, such classifications tend to overlook a more fundamental dimension: the underlying intention of unlearning--whether it seeks to truly remove internal knowledge or merely suppress its behavioral effects. In this SoK paper, we propose a new taxonomy based on this intention-oriented perspective. Building on this taxonomy, we make three key contributions. First, we revisit recent findings suggesting that many removal methods may functionally behave like suppression, and explore whether true removal is necessary or achievable. Second, we survey existing evaluation strategies, identify limitations in current metrics and benchmarks, and suggest directions for developing more reliable and intention-aligned evaluations. Third, we highlight practical challenges--such as scalability and support for sequential unlearning--that currently hinder the broader deployment of unlearning methods. In summary, this work offers a comprehensive framework for understanding and advancing unlearning in generative AI, aiming to support future research and guide policy decisions around data removal and privacy.

Yu Fu, Haz Sameen Shahgir, Hui Liu et al.

Recent advances in long-context models (LCMs), designed to handle extremely long input contexts, primarily focus on utilizing external contextual information, often leaving the influence of large language models' intrinsic knowledge underexplored. In this work, we investigate how this intrinsic knowledge affects content generation and demonstrate that its impact becomes increasingly pronounced as context length extends. Furthermore, we show that the model's ability to utilize intrinsic knowledge, which we call intrinsic retrieval ability, does not improve simultaneously with its ability to leverage contextual knowledge through extrinsic retrieval ability. Moreover, better extrinsic retrieval can interfere with the model's ability to use its own knowledge effectively, limiting its full potential. To bridge this gap, we design a simple yet effective Hybrid Needle-in-a-Haystack test that evaluates models based on their capabilities across both retrieval abilities, rather than solely emphasizing extrinsic retrieval ability. Our experimental results reveal that Qwen-2.5 models significantly outperform Llama-3.1 models, demonstrating superior intrinsic retrieval ability. Moreover, even the more powerful Llama-3.1-70B-Instruct model fails to exhibit better performance under LCM conditions, highlighting the importance of evaluating models from a dual-retrieval perspective.

Pengfei He, Yingqian Cui, Han Xu et al.

In-context learning (ICL) has emerged as a powerful capability for large language models (LLMs) to adapt to downstream tasks by leveraging a few (demonstration) examples. Despite its effectiveness, the mechanism behind ICL remains underexplored. To better understand how ICL integrates the examples with the knowledge learned by the LLM during pre-training (i.e., pre-training knowledge) and how the examples impact ICL, this paper conducts a theoretical study in binary classification tasks. In particular, we introduce a probabilistic model extending from the Gaussian mixture model to exactly quantify the impact of pre-training knowledge, label frequency, and label noise on the prediction accuracy. Based on our analysis, when the pre-training knowledge contradicts the knowledge in the examples, whether ICL prediction relies more on the pre-training knowledge or the examples depends on the number of examples. In addition, the label frequency and label noise of the examples both affect the accuracy of the ICL prediction, where the minor class has a lower accuracy, and how the label noise impacts the accuracy is determined by the specific noise level of the two classes. Extensive simulations are conducted to verify the correctness of the theoretical results, and real-data experiments also align with the theoretical insights. Our work reveals the role of pre-training knowledge and examples in ICL, offering a deeper understanding of LLMs' behaviors in classification tasks.

Haoyu Han, Juanhui Li, Wei Huang et al.

Graph Neural Networks (GNNs) have proven to be highly effective for node classification tasks across diverse graph structural patterns. Traditionally, GNNs employ a uniform global filter, typically a low-pass filter for homophilic graphs and a high-pass filter for heterophilic graphs. However, real-world graphs often exhibit a complex mix of homophilic and heterophilic patterns, rendering a single global filter approach suboptimal. In this work, we theoretically demonstrate that a global filter optimized for one pattern can adversely affect performance on nodes with differing patterns. To address this, we introduce a novel GNN framework Node-MoE that utilizes a mixture of experts to adaptively select the appropriate filters for different nodes. Extensive experiments demonstrate the effectiveness of Node-MoE on both homophilic and heterophilic graphs.

Leping Li, Hui Liu

Fault localization is to identify faulty source code. It could be done on various granularities, e.g., classes, methods, and statements. Most of the automated fault localization (AFL) approaches are coarse-grained because it is challenging to accurately locate fine-grained faulty software elements, e.g., statements. SBFL, based on dynamic execution of test cases only, is simple, intuitive, and generic (working on various granularities). However, its accuracy deserves significant improvement. To this end, in this paper, we propose a hybrid fine-grained AFL approach based on both dynamic spectrums and static statement types. The rationale of the approach is that some types of statements are significantly more/less error-prone than others, and thus statement types could be exploited for fault localization. On a crop of faulty programs, we compute the error-proneness for each type of statements, and assign priorities to special statement types that are steadily more/less error-prone than others. For a given faulty program under test, we first leverage traditional spectrum-based fault localization algorithm to identify all suspicious statements and to compute their suspicious scores. For each of the resulting suspicious statements, we retrieve its statement type as well as the special priority associated with the type. The final suspicious score is the product of the SBFL suspicious score and the priority assigned to the statement type. A significant advantage of the approach is that it is simple and intuitive, making it efficient and easy to interpret/implement. We evaluate the proposed approach on widely used benchmark Defects4J. The evaluation results suggest that the proposed approach outperforms widely used SBFL, reducing the absolute waste effort (AWE) by 9.3% on average.

Hui Liu, Danqing Zhang, Bing Yin et al.

Exploiting label hierarchies has become a promising approach to tackling the zero-shot multi-label text classification (ZS-MTC) problem. Conventional methods aim to learn a matching model between text and labels, using a graph encoder to incorporate label hierarchies to obtain effective label representations \cite{rios2018few}. More recently, pretrained models like BERT \cite{devlin2018bert} have been used to convert classification tasks into a textual entailment task \cite{yin-etal-2019-benchmarking}. This approach is naturally suitable for the ZS-MTC task. However, pretrained models are underexplored in the existing work because they do not generate individual vector representations for text or labels, making it unintuitive to combine them with conventional graph encoding methods. In this paper, we explore to improve pretrained models with label hierarchies on the ZS-MTC task. We propose a Reinforced Label Hierarchy Reasoning (RLHR) approach to encourage interdependence among labels in the hierarchies during training. Meanwhile, to overcome the weakness of flat predictions, we design a rollback algorithm that can remove logical errors from predictions during inference. Experimental results on three real-life datasets show that our approach achieves better performance and outperforms previous non-pretrained methods on the ZS-MTC task.

Bei Li, Hui Liu, Ziyang Wang et al.

In encoder-decoder neural models, multiple encoders are in general used to represent the contextual information in addition to the individual sentence. In this paper, we investigate multi-encoder approaches in documentlevel neural machine translation (NMT). Surprisingly, we find that the context encoder does not only encode the surrounding sentences but also behaves as a noise generator. This makes us rethink the real benefits of multi-encoder in context-aware translation - some of the improvements come from robust training. We compare several methods that introduce noise and/or well-tuned dropout setup into the training of these encoders. Experimental results show that noisy training plays an important role in multi-encoder-based NMT, especially when the training data is small. Also, we establish a new state-of-the-art on IWSLT Fr-En task by careful use of noise generation and dropout methods.

Zhiwei Wang, Hui Liu, Jiliang Tang et al.

Robust language processing systems are becoming increasingly important given the recent awareness of dangerous situations where brittle machine learning models can be easily broken with the presence of noises. In this paper, we introduce a robust word recognition framework that captures multi-level sequential dependencies in noised sentences. The proposed framework employs a sequence-to-sequence model over characters of each word, whose output is given to a word-level bi-directional recurrent neural network. We conduct extensive experiments to verify the effectiveness of the framework. The results show that the proposed framework outperforms state-of-the-art methods by a large margin and they also suggest that character-level dependencies can play an important role in word recognition.