Qiegen Liu

IV
h-index34
57papers
721citations
Novelty51%
AI Score56

57 Papers

6.6IVMar 18, 2022Code
Rethinking the optimization process for self-supervised model-driven MRI reconstruction

Weijian Huang, Cheng Li, Wenxin Fan et al.

Recovering high-quality images from undersampled measurements is critical for accelerated MRI reconstruction. Recently, various supervised deep learning-based MRI reconstruction methods have been developed. Despite the achieved promising performances, these methods require fully sampled reference data, the acquisition of which is resource-intensive and time-consuming. Self-supervised learning has emerged as a promising solution to alleviate the reliance on fully sampled datasets. However, existing self-supervised methods suffer from reconstruction errors due to the insufficient constraint enforced on the non-sampled data points and the error accumulation happened alongside the iterative image reconstruction process for model-driven deep learning reconstrutions. To address these challenges, we propose K2Calibrate, a K-space adaptation strategy for self-supervised model-driven MR reconstruction optimization. By iteratively calibrating the learned measurements, K2Calibrate can reduce the network's reconstruction deterioration caused by statistically dependent noise. Extensive experiments have been conducted on the open-source dataset FastMRI, and K2Calibrate achieves better results than five state-of-the-art methods. The proposed K2Calibrate is plug-and-play and can be easily integrated with different model-driven deep learning reconstruction methods.

13.3IVAug 11, 2024Code
TC-KANRecon: High-Quality and Accelerated MRI Reconstruction via Adaptive KAN Mechanisms and Intelligent Feature Scaling

Ruiquan Ge, Xiao Yu, Yifei Chen et al.

Magnetic Resonance Imaging (MRI) has become essential in clinical diagnosis due to its high resolution and multiple contrast mechanisms. However, the relatively long acquisition time limits its broader application. To address this issue, this study presents an innovative conditional guided diffusion model, named as TC-KANRecon, which incorporates the Multi-Free U-KAN (MF-UKAN) module and a dynamic clipping strategy. TC-KANRecon model aims to accelerate the MRI reconstruction process through deep learning methods while maintaining the quality of the reconstructed images. The MF-UKAN module can effectively balance the tradeoff between image denoising and structure preservation. Specifically, it presents the multi-head attention mechanisms and scalar modulation factors, which significantly enhances the model's robustness and structure preservation capabilities in complex noise environments. Moreover, the dynamic clipping strategy in TC-KANRecon adjusts the cropping interval according to the sampling steps, thereby mitigating image detail loss typicalching the visual features of the images. Furthermore, the MC-Model incorporates full-sampling k-space information, realizing efficient fusion of conditional information, enhancing the model's ability to process complex data, and improving the realism and detail richness of reconstructed images. Experimental results demonstrate that the proposed method outperforms other MRI reconstruction methods in both qualitative and quantitative evaluations. Notably, TC-KANRecon method exhibits excellent reconstruction results when processing high-noise, low-sampling-rate MRI data. Our source code is available at https://github.com/lcbkmm/TC-KANRecon.

22.8IVNov 25, 2022Code
Generative Modeling in Sinogram Domain for Sparse-view CT Reconstruction

Bing Guan, Cailian Yang, Liu Zhang et al.

The radiation dose in computed tomography (CT) examinations is harmful for patients but can be significantly reduced by intuitively decreasing the number of projection views. Reducing projection views usually leads to severe aliasing artifacts in reconstructed images. Previous deep learning (DL) techniques with sparse-view data require sparse-view/full-view CT image pairs to train the network with supervised manners. When the number of projection view changes, the DL network should be retrained with updated sparse-view/full-view CT image pairs. To relieve this limitation, we present a fully unsupervised score-based generative model in sinogram domain for sparse-view CT reconstruction. Specifically, we first train a score-based generative model on full-view sinogram data and use multi-channel strategy to form highdimensional tensor as the network input to capture their prior distribution. Then, at the inference stage, the stochastic differential equation (SDE) solver and data-consistency step were performed iteratively to achieve fullview projection. Filtered back-projection (FBP) algorithm was used to achieve the final image reconstruction. Qualitative and quantitative studies were implemented to evaluate the presented method with several CT data. Experimental results demonstrated that our method achieved comparable or better performance than the supervised learning counterparts.

9.5IVMar 21, 2022Code
K-space and Image Domain Collaborative Energy based Model for Parallel MRI Reconstruction

Zongjiang Tu, Chen Jiang, Yu Guan et al.

Decreasing magnetic resonance (MR) image acquisition times can potentially make MR examinations more accessible. Prior arts including the deep learning models have been devoted to solving the problem of long MRI imaging time. Recently, deep generative models have exhibited great potentials in algorithm robustness and usage flexibility. Nevertheless, none of existing schemes can be learned or employed to the k-space measurement directly. Furthermore, how do the deep generative models work well in hybrid domain is also worth being investigated. In this work, by taking advantage of the deep energy-based models, we propose a k-space and image domain collaborative generative model to comprehensively estimate the MR data from under-sampled measurement. Experimental comparisons with the state-of-the-arts demonstrated that the proposed hybrid method has less error in reconstruction accuracy and is more stable under different acceleration factors

19.8IVAug 30, 2023Code
Stage-by-stage Wavelet Optimization Refinement Diffusion Model for Sparse-View CT Reconstruction

Kai Xu, Shiyu Lu, Bin Huang et al.

Diffusion models have emerged as potential tools to tackle the challenge of sparse-view CT reconstruction, displaying superior performance compared to conventional methods. Nevertheless, these prevailing diffusion models predominantly focus on the sinogram or image domains, which can lead to instability during model training, potentially culminating in convergence towards local minimal solutions. The wavelet trans-form serves to disentangle image contents and features into distinct frequency-component bands at varying scales, adeptly capturing diverse directional structures. Employing the Wavelet transform as a guiding sparsity prior significantly enhances the robustness of diffusion models. In this study, we present an innovative approach named the Stage-by-stage Wavelet Optimization Refinement Diffusion (SWORD) model for sparse-view CT reconstruction. Specifically, we establish a unified mathematical model integrating low-frequency and high-frequency generative models, achieving the solution with optimization procedure. Furthermore, we perform the low-frequency and high-frequency generative models on wavelet's decomposed components rather than sinogram or image domains, ensuring the stability of model training. Our method rooted in established optimization theory, comprising three distinct stages, including low-frequency generation, high-frequency refinement and domain transform. Our experimental results demonstrate that the proposed method outperforms existing state-of-the-art methods both quantitatively and qualitatively.

12.8IVMay 8, 2022Code
WKGM: Weight-K-space Generative Model for Parallel Imaging Reconstruction

Zongjiang Tu, Die Liu, Xiaoqing Wang et al.

Deep learning based parallel imaging (PI) has made great progresses in recent years to accelerate magnetic resonance imaging (MRI). Nevertheless, it still has some limitations, such as the robustness and flexibility of existing methods have great deficiency. In this work, we propose a method to explore the k-space domain learning via robust generative modeling for flexible calibration-less PI reconstruction, coined weight-k-space generative model (WKGM). Specifically, WKGM is a generalized k-space domain model, where the k-space weighting technology and high-dimensional space augmentation design are efficiently incorporated for score-based generative model training, resulting in good and robust reconstructions. In addition, WKGM is flexible and thus can be synergistically combined with various traditional k-space PI models, which can make full use of the correlation between multi-coil data and realizecalibration-less PI. Even though our model was trained on only 500 images, experimental results with varying sampling patterns and acceleration factors demonstrate that WKGM can attain state-of-the-art reconstruction results with the well-learned k-space generative prior.

13.7IVAug 15, 2022Code
One-shot Generative Prior in Hankel-k-space for Parallel Imaging Reconstruction

Hong Peng, Chen Jiang, Jing Cheng et al.

Magnetic resonance imaging serves as an essential tool for clinical diagnosis. However, it suffers from a long acquisition time. The utilization of deep learning, especially the deep generative models, offers aggressive acceleration and better reconstruction in magnetic resonance imaging. Nevertheless, learning the data distribution as prior knowledge and reconstructing the image from limited data remains challenging. In this work, we propose a novel Hankel-k-space generative model (HKGM), which can generate samples from a training set of as little as one k-space data. At the prior learning stage, we first construct a large Hankel matrix from k-space data, then extract multiple structured k-space patches from the large Hankel matrix to capture the internal distribution among different patches. Extracting patches from a Hankel matrix enables the generative model to be learned from redundant and low-rank data space. At the iterative reconstruction stage, it is observed that the desired solution obeys the learned prior knowledge. The intermediate reconstruction solution is updated by taking it as the input of the generative model. The updated result is then alternatively operated by imposing low-rank penalty on its Hankel matrix and data consistency con-strain on the measurement data. Experimental results confirmed that the internal statistics of patches within a single k-space data carry enough information for learning a powerful generative model and provide state-of-the-art reconstruction.

6.6IVDec 7, 2022Code
One Sample Diffusion Model in Projection Domain for Low-Dose CT Imaging

Bin Huang, Liu Zhang, Shiyu Lu et al.

Low-dose computed tomography (CT) plays a significant role in reducing the radiation risk in clinical applications. However, lowering the radiation dose will significantly degrade the image quality. With the rapid development and wide application of deep learning, it has brought new directions for the development of low-dose CT imaging algorithms. Therefore, we propose a fully unsupervised one sample diffusion model (OSDM)in projection domain for low-dose CT reconstruction. To extract sufficient prior information from single sample, the Hankel matrix formulation is employed. Besides, the penalized weighted least-squares and total variation are introduced to achieve superior image quality. Specifically, we first train a score-based generative model on one sinogram by extracting a great number of tensors from the structural-Hankel matrix as the network input to capture prior distribution. Then, at the inference stage, the stochastic differential equation solver and data consistency step are performed iteratively to obtain the sinogram data. Finally, the final image is obtained through the filtered back-projection algorithm. The reconstructed results are approaching to the normal-dose counterparts. The results prove that OSDM is practical and effective model for reducing the artifacts and preserving the image quality.

2.8CVAug 30, 2023
Physics-Informed DeepMRI: Bridging the Gap from Heat Diffusion to k-Space Interpolation

Zhuo-Xu Cui, Congcong Liu, Xiaohong Fan et al.

In the field of parallel imaging (PI), alongside image-domain regularization methods, substantial research has been dedicated to exploring $k$-space interpolation. However, the interpretability of these methods remains an unresolved issue. Furthermore, these approaches currently face acceleration limitations that are comparable to those experienced by image-domain methods. In order to enhance interpretability and overcome the acceleration limitations, this paper introduces an interpretable framework that unifies both $k$-space interpolation techniques and image-domain methods, grounded in the physical principles of heat diffusion equations. Building upon this foundational framework, a novel $k$-space interpolation method is proposed. Specifically, we model the process of high-frequency information attenuation in $k$-space as a heat diffusion equation, while the effort to reconstruct high-frequency information from low-frequency regions can be conceptualized as a reverse heat equation. However, solving the reverse heat equation poses a challenging inverse problem. To tackle this challenge, we modify the heat equation to align with the principles of magnetic resonance PI physics and employ the score-based generative method to precisely execute the modified reverse heat diffusion. Finally, experimental validation conducted on publicly available datasets demonstrates the superiority of the proposed approach over traditional $k$-space interpolation methods, deep learning-based $k$-space interpolation methods, and conventional diffusion models in terms of reconstruction accuracy, particularly in high-frequency regions.

2.7IVApr 5, 2022Code
Multi-Weight Respecification of Scan-specific Learning for Parallel Imaging

Hui Tao, Haifeng Wang, Shanshan Wang et al.

Parallel imaging is widely used in magnetic resonance imaging as an acceleration technology. Traditional linear reconstruction methods in parallel imaging often suffer from noise amplification. Recently, a non-linear robust artificial-neural-network for k-space interpolation (RAKI) exhibits superior noise resilience over other linear methods. However, RAKI performs poorly at high acceleration rates, and needs a large amount of autocalibration signals as the training samples. In order to tackle these issues, we propose a multi-weight method that implements multiple weighting matrices on the undersampled data, named as MW-RAKI. Enforcing multiple weighted matrices on the measurements can effectively reduce the influence of noise and increase the data constraints. Furthermore, we incorporate the strategy of multiple weighting matrixes into a residual version of RAKI, and form MW-rRAKI.Experimental compari-sons with the alternative methods demonstrated noticeably better reconstruction performances, particularly at high acceleration rates.

2.7IVDec 15, 2022
Universal Generative Modeling in Dual-domain for Dynamic MR Imaging

Chuanming Yu, Yu Guan, Ziwen Ke et al.

Dynamic magnetic resonance image reconstruction from incomplete k-space data has generated great research interest due to its capability to reduce scan time. Never-theless, the reconstruction problem is still challenging due to its ill-posed nature. Recently, diffusion models espe-cially score-based generative models have exhibited great potential in algorithm robustness and usage flexi-bility. Moreover, the unified framework through the variance exploding stochastic differential equation (VE-SDE) is proposed to enable new sampling methods and further extend the capabilities of score-based gener-ative models. Therefore, by taking advantage of the uni-fied framework, we proposed a k-space and image Du-al-Domain collaborative Universal Generative Model (DD-UGM) which combines the score-based prior with low-rank regularization penalty to reconstruct highly under-sampled measurements. More precisely, we extract prior components from both image and k-space domains via a universal generative model and adaptively handle these prior components for faster processing while maintaining good generation quality. Experimental comparisons demonstrated the noise reduction and detail preservation abilities of the proposed method. Much more than that, DD-UGM can reconstruct data of differ-ent frames by only training a single frame image, which reflects the flexibility of the proposed model.

3.7CVDec 11, 2022
Low-rank Tensor Assisted K-space Generative Model for Parallel Imaging Reconstruction

Wei Zhang, Zengwei Xiao, Hui Tao et al.

Although recent deep learning methods, especially generative models, have shown good performance in fast magnetic resonance imaging, there is still much room for improvement in high-dimensional generation. Considering that internal dimensions in score-based generative models have a critical impact on estimating the gradient of the data distribution, we present a new idea, low-rank tensor assisted k-space generative model (LR-KGM), for parallel imaging reconstruction. This means that we transform original prior information into high-dimensional prior information for learning. More specifically, the multi-channel data is constructed into a large Hankel matrix and the matrix is subsequently folded into tensor for prior learning. In the testing phase, the low-rank rotation strategy is utilized to impose low-rank constraints on tensor output of the generative network. Furthermore, we alternately use traditional generative iterations and low-rank high-dimensional tensor iterations for reconstruction. Experimental comparisons with the state-of-the-arts demonstrated that the proposed LR-KGM method achieved better performance.

1.4CVNov 25, 2022Code
Generative Modeling in Structural-Hankel Domain for Color Image Inpainting

Zihao Li, Chunhua Wu, Shenglin Wu et al.

In recent years, some researchers focused on using a single image to obtain a large number of samples through multi-scale features. This study intends to a brand-new idea that requires only ten or even fewer samples to construct the low-rank structural-Hankel matrices-assisted score-based generative model (SHGM) for color image inpainting task. During the prior learning process, a certain amount of internal-middle patches are firstly extracted from several images and then the structural-Hankel matrices are constructed from these patches. To better apply the score-based generative model to learn the internal statistical distribution within patches, the large-scale Hankel matrices are finally folded into the higher dimensional tensors for prior learning. During the iterative inpainting process, SHGM views the inpainting problem as a conditional generation procedure in low-rank environment. As a result, the intermediate restored image is acquired by alternatively performing the stochastic differential equation solver, alternating direction method of multipliers, and data consistency steps. Experimental results demonstrated the remarkable performance and diversity of SHGM.

3.8LGNov 1, 2023
PET Tracer Conversion among Brain PET via Variable Augmented Invertible Network

Bohui Shen, Wei Zhang, Xubiao Liu et al.

Positron emission tomography (PET) serves as an essential tool for diagnosis of encephalopathy and brain science research. However, it suffers from the limited choice of tracers. Nowadays, with the wide application of PET imaging in neuropsychiatric treatment, 6-18F-fluoro-3, 4-dihydroxy-L-phenylalanine (DOPA) has been found to be more effective than 18F-labeled fluorine-2-deoxyglucose (FDG) in the field. Nevertheless, due to the complexity of its preparation and other limitations, DOPA is far less widely used than FDG. To address this issue, a tracer conversion invertible neural network (TC-INN) for image projection is developed to map FDG images to DOPA images through deep learning. More diagnostic information is obtained by generating PET images from FDG to DOPA. Specifically, the proposed TC-INN consists of two separate phases, one for training traceable data, the other for rebuilding new data. The reference DOPA PET image is used as a learning target for the corresponding network during the training process of tracer conversion. Meanwhile, the invertible network iteratively estimates the resultant DOPA PET data and compares it to the reference DOPA PET data. Notably, the reversible model employs variable enhancement technique to achieve better power generation. Moreover, image registration needs to be performed before training due to the angular deviation of the acquired FDG and DOPA data information. Experimental results exhibited excellent generation capability in mapping between FDG and DOPA, suggesting that PET tracer conversion has great potential in the case of limited tracer applications.

3.0IVOct 3, 2023
Synthetic CT Generation via Variant Invertible Network for All-digital Brain PET Attenuation Correction

Yu Guan, Bohui Shen, Xinchong Shi et al.

Attenuation correction (AC) is essential for the generation of artifact-free and quantitatively accurate positron emission tomography (PET) images. However, AC of PET faces challenges including inter-scan motion and erroneous transformation of structural voxel-intensities to PET attenuation-correction factors. Nowadays, the problem of AC for quantitative PET have been solved to a large extent after the commercial availability of devices combining PET with computed tomography (CT). Meanwhile, considering the feasibility of a deep learning approach for PET AC without anatomical imaging, this paper develops a PET AC method, which uses deep learning to generate continuously valued CT images from non-attenuation corrected PET images for AC on brain PET imaging. Specifically, an invertible network combined with the variable augmentation strategy that can achieve the bidirectional inference processes is proposed for synthetic CT generation (IVNAC). To evaluate the performance of the proposed algorithm, we conducted a comprehensive study on a total of 1440 data from 37 clinical patients using comparative algorithms (such as Cycle-GAN and Pix2pix). Perceptual analysis and quantitative evaluations illustrate that the invertible network for PET AC outperforms other existing AC models, which demonstrates the potential of the proposed method and the feasibility of achieving brain PET AC without CT.

7.6CVJul 1, 2024Code
Diffusion Transformer Model With Compact Prior for Low-dose PET Reconstruction

Bin Huang, Xubiao Liu, Lei Fang et al.

Positron emission tomography (PET) is an advanced medical imaging technique that plays a crucial role in non-invasive clinical diagnosis. However, while reducing radiation exposure through low-dose PET scans is beneficial for patient safety, it often results in insufficient statistical data. This scarcity of data poses significant challenges for accurately reconstructing high-quality images, which are essential for reliable diagnostic outcomes. In this research, we propose a diffusion transformer model (DTM) guided by joint compact prior (JCP) to enhance the reconstruction quality of low-dose PET imaging. In light of current research findings, we present a pioneering PET reconstruction model that integrates diffusion and transformer models for joint optimization. This model combines the powerful distribution mapping abilities of diffusion models with the capacity of transformers to capture long-range dependencies, offering significant advantages for low-dose PET reconstruction. Additionally, the incorporation of the lesion refining block and penalized weighted least squares (PWLS) enhance the recovery capability of lesion regions and preserves detail information, solving blurring problems in lesion areas and texture details of most deep learning frameworks. Experimental results demonstrate the effectiveness of DTM in enhancing image quality and preserving critical clinical information for low-dose PET scans. Our approach not only reduces radiation exposure risks but also provides a more reliable PET imaging tool for early disease detection and patient management.

7.9LGNov 8, 2024Code
RED: Residual Estimation Diffusion for Low-Dose PET Sinogram Reconstruction

Xingyu Ai, Bin Huang, Fang Chen et al.

Recent advances in diffusion models have demonstrated exceptional performance in generative tasks across vari-ous fields. In positron emission tomography (PET), the reduction in tracer dose leads to information loss in sino-grams. Using diffusion models to reconstruct missing in-formation can improve imaging quality. Traditional diffu-sion models effectively use Gaussian noise for image re-constructions. However, in low-dose PET reconstruction, Gaussian noise can worsen the already sparse data by introducing artifacts and inconsistencies. To address this issue, we propose a diffusion model named residual esti-mation diffusion (RED). From the perspective of diffusion mechanism, RED uses the residual between sinograms to replace Gaussian noise in diffusion process, respectively sets the low-dose and full-dose sinograms as the starting point and endpoint of reconstruction. This mechanism helps preserve the original information in the low-dose sinogram, thereby enhancing reconstruction reliability. From the perspective of data consistency, RED introduces a drift correction strategy to reduce accumulated prediction errors during the reverse process. Calibrating the inter-mediate results of reverse iterations helps maintain the data consistency and enhances the stability of reconstruc-tion process. Experimental results show that RED effec-tively improves the quality of low-dose sinograms as well as the reconstruction results. The code is available at: https://github.com/yqx7150/RED.

3.6CVMar 11, 2025Code
Diffusion Transformer Meets Random Masks: An Advanced PET Reconstruction Framework

Bin Huang, Binzhong He, Yanhan Chen et al.

Deep learning has significantly advanced PET image re-construction, achieving remarkable improvements in image quality through direct training on sinogram or image data. Traditional methods often utilize masks for inpainting tasks, but their incorporation into PET reconstruction frameworks introduces transformative potential. In this study, we pro-pose an advanced PET reconstruction framework called Diffusion tRansformer mEets rAndom Masks (DREAM). To the best of our knowledge, this is the first work to integrate mask mechanisms into both the sinogram domain and the latent space, pioneering their role in PET reconstruction and demonstrating their ability to enhance reconstruction fidelity and efficiency. The framework employs a high-dimensional stacking approach, transforming masked data from two to three dimensions to expand the solution space and enable the model to capture richer spatial rela-tionships. Additionally, a mask-driven latent space is de-signed to accelerate the diffusion process by leveraging sinogram-driven and mask-driven compact priors, which reduce computational complexity while preserving essen-tial data characteristics. A hierarchical masking strategy is also introduced, guiding the model from focusing on fi-ne-grained local details in the early stages to capturing broader global patterns over time. This progressive ap-proach ensures a balance between detailed feature preservation and comprehensive context understanding. Experimental results demonstrate that DREAM not only improves the overall quality of reconstructed PET images but also preserves critical clinical details, highlighting its potential to advance PET imaging technology. By inte-grating compact priors and hierarchical masking, DREAM offers a promising and efficient avenue for future research and application in PET imaging. The open-source code is available at: https://github.com/yqx7150/DREAM.

3.6CVJul 14, 2025Code
LifelongPR: Lifelong point cloud place recognition based on sample replay and prompt learning

Xianghong Zou, Jianping Li, Zhe Chen et al.

Point cloud place recognition (PCPR) determines the geo-location within a prebuilt map and plays a crucial role in geoscience and robotics applications such as autonomous driving, intelligent transportation, and augmented reality. In real-world large-scale deployments of a geographic positioning system, PCPR models must continuously acquire, update, and accumulate knowledge to adapt to diverse and dynamic environments, i.e., the ability known as continual learning (CL). However, existing PCPR models often suffer from catastrophic forgetting, leading to significant performance degradation in previously learned scenes when adapting to new environments or sensor types. This results in poor model scalability, increased maintenance costs, and system deployment difficulties, undermining the practicality of PCPR. To address these issues, we propose LifelongPR, a novel continual learning framework for PCPR, which effectively extracts and fuses knowledge from sequential point cloud data. First, to alleviate the knowledge loss, we propose a replay sample selection method that dynamically allocates sample sizes according to each dataset's information quantity and selects spatially diverse samples for maximal representativeness. Second, to handle domain shifts, we design a prompt learning-based CL framework with a lightweight prompt module and a two-stage training strategy, enabling domain-specific feature adaptation while minimizing forgetting. Comprehensive experiments on large-scale public and self-collected datasets are conducted to validate the effectiveness of the proposed method. Compared with state-of-the-art (SOTA) methods, our method achieves 6.50% improvement in mIR@1, 7.96% improvement in mR@1, and an 8.95% reduction in F. The code and pre-trained models are publicly available at https://github.com/zouxianghong/LifelongPR.

5.1IVJun 20, 2025Code
PET Tracer Separation Using Conditional Diffusion Transformer with Multi-latent Space Learning

Bin Huang, Feihong Xu, Xinchong Shi et al.

In clinical practice, single-radiotracer positron emission tomography (PET) is commonly used for imaging. Although multi-tracer PET imaging can provide supplementary information of radiotracers that are sensitive to physiological function changes, enabling a more comprehensive characterization of physiological and pathological states, the gamma-photon pairs generated by positron annihilation reactions of different tracers in PET imaging have the same energy, making it difficult to distinguish the tracer signals. In this study, a multi-latent space guided texture conditional diffusion transformer model (MS-CDT) is proposed for PET tracer separation. To the best of our knowledge, this is the first attempt to use texture condition and multi-latent space for tracer separation in PET imaging. The proposed model integrates diffusion and transformer architectures into a unified optimization framework, with the novel addition of texture masks as conditional inputs to enhance image details. By leveraging multi-latent space prior derived from different tracers, the model captures multi-level feature representations, aiming to balance computational efficiency and detail preservation. The texture masks, serving as conditional guidance, help the model focus on salient structural patterns, thereby improving the extraction and utilization of fine-grained image textures. When combined with the diffusion transformer backbone, this conditioning mechanism contributes to more accurate and robust tracer separation. To evaluate its effectiveness, the proposed MS-CDT is compared with several advanced methods on two types of 3D PET datasets: brain and chest scans. Experimental results indicate that MS-CDT achieved competitive performance in terms of image quality and preservation of clinically relevant information. Code is available at: https://github.com/yqx7150/MS-CDT.

5.1IVJun 20, 2025Code
A Prior-Guided Joint Diffusion Model in Projection Domain for PET Tracer Conversion

Fang Chen, Weifeng Zhang, Xingyu Ai et al.

Positron emission tomography (PET) is widely used to assess metabolic activity, but its application is limited by the availability of radiotracers. 18F-labeled fluorodeoxyglucose (18F-FDG) is the most commonly used tracer but shows limited effectiveness for certain tumors. In contrast, 6-18F-fluoro-3,4-dihydroxy-L-phenylalanine (18F-DOPA) offers higher specificity for neuroendocrine tumors and neurological disorders. However, the complexity of its synthesis process and constraints on transportation time have limited its clinical application. Among different forms of raw data acquired by the scanner, sinogram is a commonly used representation in PET imaging. Therefore, modeling in projection domain enables more direct utilization of the original information, potentially reducing the accumulation errors during the image reconstruction process. Inspired by these factors, this study proposes a prior-guided joint diffusion model (PJDM) for transforming 18F-FDG PET sinograms into 18F-DOPA PET sinograms. During inference, an initial synthetic 18F-DOPA PET sinogram is first generated using a higher-order hybrid sampler. This sinogram is then degraded and serves as an additional condition to guide the iterative refinement process. Experimental results demonstrated that PJDM effectively improved both sinogram quality and the final synthetic outcomes. The code is available at: https://github.com/yqx7150/PJDM.

5.1IVJun 16, 2025Code
PRO: Projection Domain Synthesis for CT Imaging

Kang Chen, Bin Huang, Xuebin Yang et al.

Synthetic CT projection data is crucial for advancing imaging research, yet its generation remains challenging. Current image domain methods are limited as they cannot simulate the physical acquisition process or utilize the complete statistical information present in projection data, restricting their utility and fidelity. In this work, we present PRO, a projection domain synthesis foundation model for CT imaging. To the best of our knowledge, this is the first study that performs CT synthesis in the projection domain. Unlike previous approaches that operate in the image domain, PRO learns rich structural representations from projection data and leverages anatomical text prompts for controllable synthesis. Projection data generation models can utilize complete measurement signals and simulate the physical processes of scanning, including material attenuation characteristics, beam hardening, scattering, and projection geometry, and support research on downstream imaging tasks. Moreover, PRO functions as a foundation model, capable of generalizing across diverse downstream tasks by adjusting its generative behavior via prompt inputs. Experimental results demonstrated that incorporating our synthesized data significantly improves performance across multiple downstream tasks, including low-dose and sparse-view reconstruction. These findings underscore the versatility and scalability of PRO in data generation for various CT applications. These results highlight the potential of projection domain synthesis as a powerful tool for data augmentation and robust CT imaging. Our source code is publicly available at: https://github.com/yqx7150/PRO.

12.6CVSep 26, 2021Code
Self-Supervised Learning for MRI Reconstruction with a Parallel Network Training Framework

Chen Hu, Cheng Li, Haifeng Wang et al.

Image reconstruction from undersampled k-space data plays an important role in accelerating the acquisition of MR data, and a lot of deep learning-based methods have been exploited recently. Despite the achieved inspiring results, the optimization of these methods commonly relies on the fully-sampled reference data, which are time-consuming and difficult to collect. To address this issue, we propose a novel self-supervised learning method. Specifically, during model optimization, two subsets are constructed by randomly selecting part of k-space data from the undersampled data and then fed into two parallel reconstruction networks to perform information recovery. Two reconstruction losses are defined on all the scanned data points to enhance the network's capability of recovering the frequency information. Meanwhile, to constrain the learned unscanned data points of the network, a difference loss is designed to enforce consistency between the two parallel networks. In this way, the reconstruction model can be properly trained with only the undersampled data. During the model evaluation, the undersampled data are treated as the inputs and either of the two trained networks is expected to reconstruct the high-quality results. The proposed method is flexible and can be employed in any existing deep learning-based method. The effectiveness of the method is evaluated on an open brain MRI dataset. Experimental results demonstrate that the proposed self-supervised method can achieve competitive reconstruction performance compared to the corresponding supervised learning method at high acceleration rates (4 and 8). The code is publicly available at \url{https://github.com/chenhu96/Self-Supervised-MRI-Reconstruction}.

19.6IVJul 16, 2019Code
X-Net: Brain Stroke Lesion Segmentation Based on Depthwise Separable Convolution and Long-range Dependencies

Kehan Qi, Hao Yang, Cheng Li et al.

The morbidity of brain stroke increased rapidly in the past few years. To help specialists in lesion measurements and treatment planning, automatic segmentation methods are critically required for clinical practices. Recently, approaches based on deep learning and methods for contextual information extraction have served in many image segmentation tasks. However, their performances are limited due to the insufficient training of a large number of parameters, which sometimes fail in capturing long-range dependencies. To address these issues, we propose a depthwise separable convolution based X-Net that designs a nonlocal operation namely Feature Similarity Module (FSM) to capture long-range dependencies. The adopted depthwise convolution allows to reduce the network size, while the developed FSM provides a more effective, dense contextual information extraction and thus facilitates better segmentation. The effectiveness of X-Net was evaluated on an open dataset Anatomical Tracings of Lesions After Stroke (ATLAS) with superior performance achieved compared to other six state-of-the-art approaches. We make our code and models available at https://github.com/Andrewsher/X-Net.

8.6IVJan 17, 2025Code
Physics-informed DeepCT: Sinogram Wavelet Decomposition Meets Masked Diffusion

Zekun Zhou, Tan Liu, Bing Yu et al.

Diffusion model shows remarkable potential on sparse-view computed tomography (SVCT) reconstruction. However, when a network is trained on a limited sample space, its generalization capability may be constrained, which degrades performance on unfamiliar data. For image generation tasks, this can lead to issues such as blurry details and inconsistencies between regions. To alleviate this problem, we propose a Sinogram-based Wavelet random decomposition And Random mask diffusion Model (SWARM) for SVCT reconstruction. Specifically, introducing a random mask strategy in the sinogram effectively expands the limited training sample space. This enables the model to learn a broader range of data distributions, enhancing its understanding and generalization of data uncertainty. In addition, applying a random training strategy to the high-frequency components of the sinogram wavelet enhances feature representation and improves the ability to capture details in different frequency bands, thereby improving performance and robustness. Two-stage iterative reconstruction method is adopted to ensure the global consistency of the reconstructed image while refining its details. Experimental results demonstrate that SWARM outperforms competing approaches in both quantitative and qualitative performance across various datasets.

6.3IVNov 6, 2024Code
Sub-DM:Subspace Diffusion Model with Orthogonal Decomposition for MRI Reconstruction

Yu Guan, Qinrong Cai, Wei Li et al.

Diffusion model-based approaches recently achieved re-markable success in MRI reconstruction, but integration into clinical routine remains challenging due to its time-consuming convergence. This phenomenon is partic-ularly notable when directly apply conventional diffusion process to k-space data without considering the inherent properties of k-space sampling, limiting k-space learning efficiency and image reconstruction quality. To tackle these challenges, we introduce subspace diffusion model with orthogonal decomposition, a method (referred to as Sub-DM) that restrict the diffusion process via projections onto subspace as the k-space data distribution evolves toward noise. Particularly, the subspace diffusion model circumvents the inference challenges posed by the com-plex and high-dimensional characteristics of k-space data, so the highly compact subspace ensures that diffusion process requires only a few simple iterations to produce accurate prior information. Furthermore, the orthogonal decomposition strategy based on wavelet transform hin-ders the information loss during the migration of the vanilla diffusion process to the subspace. Considering the strate-gy is approximately reversible, such that the entire pro-cess can be reversed. As a result, it allows the diffusion processes in different spaces to refine models through a mutual feedback mechanism, enabling the learning of ac-curate prior even when dealing with complex k-space data. Comprehensive experiments on different datasets clearly demonstrate that the superiority of Sub-DM against state of-the-art methods in terms of reconstruction speed and quality.

6.3IVOct 30, 2024
st-DTPM: Spatial-Temporal Guided Diffusion Transformer Probabilistic Model for Delayed Scan PET Image Prediction

Ran Hong, Yuxia Huang, Lei Liu et al.

PET imaging is widely employed for observing biological metabolic activities within the human body. However, numerous benign conditions can cause increased uptake of radiopharmaceuticals, confounding differentiation from malignant tumors. Several studies have indicated that dual-time PET imaging holds promise in distinguishing between malignant and benign tumor processes. Nevertheless, the hour-long distribution period of radiopharmaceuticals post-injection complicates the determination of optimal timing for the second scan, presenting challenges in both practical applications and research. Notably, we have identified that delay time PET imaging can be framed as an image-to-image conversion problem. Motivated by this insight, we propose a novel spatial-temporal guided diffusion transformer probabilistic model (st-DTPM) to solve dual-time PET imaging prediction problem. Specifically, this architecture leverages the U-net framework that integrates patch-wise features of CNN and pixel-wise relevance of Transformer to obtain local and global information. And then employs a conditional DDPM model for image synthesis. Furthermore, on spatial condition, we concatenate early scan PET images and noisy PET images on every denoising step to guide the spatial distribution of denoising sampling. On temporal condition, we convert diffusion time steps and delay time to a universal time vector, then embed it to each layer of model architecture to further improve the accuracy of predictions. Experimental results demonstrated the superiority of our method over alternative approaches in preserving image quality and structural information, thereby affirming its efficacy in predictive task.

3.7CVJan 3, 2024
AID-DTI: Accelerating High-fidelity Diffusion Tensor Imaging with Detail-Preserving Model-based Deep Learning

Wenxin Fan, Jian Cheng, Cheng Li et al.

Deep learning has shown great potential in accelerating diffusion tensor imaging (DTI). Nevertheless, existing methods tend to suffer from Rician noise and detail loss in reconstructing the DTI-derived parametric maps especially when sparsely sampled q-space data are used. This paper proposes a novel method, AID-DTI (Accelerating hIgh fiDelity Diffusion Tensor Imaging), to facilitate fast and accurate DTI with only six measurements. AID-DTI is equipped with a newly designed Singular Value Decomposition (SVD)-based regularizer, which can effectively capture fine details while suppressing noise during network training. Experimental results on Human Connectome Project (HCP) data consistently demonstrate that the proposed method estimates DTI parameter maps with fine-grained details and outperforms three state-of-the-art methods both quantitatively and qualitatively.

3.6CVSep 7, 2025
Physics-Guided Null-Space Diffusion with Sparse Masking for Corrective Sparse-View CT Reconstruction

Zekun Zhou, Yanru Gong, Liu Shi et al.

Diffusion models have demonstrated remarkable generative capabilities in image processing tasks. We propose a Sparse condition Temporal Rewighted Integrated Distribution Estimation guided diffusion model (STRIDE) for sparse-view CT reconstruction. Specifically, we design a joint training mechanism guided by sparse conditional probabilities to facilitate the model effective learning of missing projection view completion and global information modeling. Based on systematic theoretical analysis, we propose a temporally varying sparse condition reweighting guidance strategy to dynamically adjusts weights during the progressive denoising process from pure noise to the real image, enabling the model to progressively perceive sparse-view information. The linear regression is employed to correct distributional shifts between known and generated data, mitigating inconsistencies arising during the guidance process. Furthermore, we construct a dual-network parallel architecture to perform global correction and optimization across multiple sub-frequency components, thereby effectively improving the model capability in both detail restoration and structural preservation, ultimately achieving high-quality image reconstruction. Experimental results on both public and real datasets demonstrate that the proposed method achieves the best improvement of 2.58 dB in PSNR, increase of 2.37\% in SSIM, and reduction of 0.236 in MSE compared to the best-performing baseline methods. The reconstructed images exhibit excellent generalization and robustness in terms of structural consistency, detail restoration, and artifact suppression.

1.2MED-PHJul 9, 2025
Diffusion-Assisted Frequency Attention Model for Whole-body Low-field MRI Reconstruction

Xin Xie, Yu Guan, Zhuoxu Cui et al.

By integrating the generative strengths of diffusion models with the representation capabilities of frequency-domain attention, DFAM effectively enhances reconstruction performance under low-SNR condi-tions. Experimental results demonstrate that DFAM consistently outperforms both conventional reconstruction algorithms and recent learning-based approaches. These findings highlight the potential of DFAM as a promising solution to advance low-field MRI reconstruction, particularly in resource-constrained or underdeveloped clinical settings.

8.6IVJun 30, 2025
PWD: Prior-Guided and Wavelet-Enhanced Diffusion Model for Limited-Angle CT

Yi Liu, Yiyang Wen, Zekun Zhou et al.

Generative diffusion models have received increasing attention in medical imaging, particularly in limited-angle computed tomography (LACT). Standard diffusion models achieve high-quality image reconstruction but require a large number of sampling steps during inference, resulting in substantial computational overhead. Although skip-sampling strategies have been proposed to improve efficiency, they often lead to loss of fine structural details. To address this issue, we propose a prior information embedding and wavelet feature fusion fast sampling diffusion model for LACT reconstruction. The PWD enables efficient sampling while preserving reconstruction fidelity in LACT, and effectively mitigates the degradation typically introduced by skip-sampling. Specifically, during the training phase, PWD maps the distribution of LACT images to that of fully sampled target images, enabling the model to learn structural correspondences between them. During inference, the LACT image serves as an explicit prior to guide the sampling trajectory, allowing for high-quality reconstruction with significantly fewer steps. In addition, PWD performs multi-scale feature fusion in the wavelet domain, effectively enhancing the reconstruction of fine details by leveraging both low-frequency and high-frequency information. Quantitative and qualitative evaluations on clinical dental arch CBCT and periapical datasets demonstrate that PWD outperforms existing methods under the same sampling condition. Using only 50 sampling steps, PWD achieves at least 1.7 dB improvement in PSNR and 10% gain in SSIM.

5.1IVJun 30, 2025
FD-DiT: Frequency Domain-Directed Diffusion Transformer for Low-Dose CT Reconstruction

Qiqing Liu, Guoquan Wei, Zekun Zhou et al.

Low-dose computed tomography (LDCT) reduces radiation exposure but suffers from image artifacts and loss of detail due to quantum and electronic noise, potentially impacting diagnostic accuracy. Transformer combined with diffusion models has been a promising approach for image generation. Nevertheless, existing methods exhibit limitations in preserving finegrained image details. To address this issue, frequency domain-directed diffusion transformer (FD-DiT) is proposed for LDCT reconstruction. FD-DiT centers on a diffusion strategy that progressively introduces noise until the distribution statistically aligns with that of LDCT data, followed by denoising processing. Furthermore, we employ a frequency decoupling technique to concentrate noise primarily in high-frequency domain, thereby facilitating effective capture of essential anatomical structures and fine details. A hybrid denoising network is then utilized to optimize the overall data reconstruction process. To enhance the capability in recognizing high-frequency noise, we incorporate sliding sparse local attention to leverage the sparsity and locality of shallow-layer information, propagating them via skip connections for improving feature representation. Finally, we propose a learnable dynamic fusion strategy for optimal component integration. Experimental results demonstrate that at identical dose levels, LDCT images reconstructed by FD-DiT exhibit superior noise and artifact suppression compared to state-of-the-art methods.

5.1IVMay 15, 2025
Ordered-subsets Multi-diffusion Model for Sparse-view CT Reconstruction

Pengfei Yu, Bin Huang, Minghui Zhang et al.

Score-based diffusion models have shown significant promise in the field of sparse-view CT reconstruction. However, the projection dataset is large and riddled with redundancy. Consequently, applying the diffusion model to unprocessed data results in lower learning effectiveness and higher learning difficulty, frequently leading to reconstructed images that lack fine details. To address these issues, we propose the ordered-subsets multi-diffusion model (OSMM) for sparse-view CT reconstruction. The OSMM innovatively divides the CT projection data into equal subsets and employs multi-subsets diffusion model (MSDM) to learn from each subset independently. This targeted learning approach reduces complexity and enhances the reconstruction of fine details. Furthermore, the integration of one-whole diffusion model (OWDM) with complete sinogram data acts as a global information constraint, which can reduce the possibility of generating erroneous or inconsistent sinogram information. Moreover, the OSMM's unsupervised learning framework provides strong robustness and generalizability, adapting seamlessly to varying sparsity levels of CT sinograms. This ensures consistent and reliable performance across different clinical scenarios. Experimental results demonstrate that OSMM outperforms traditional diffusion models in terms of image quality and noise resilience, offering a powerful and versatile solution for advanced CT imaging in sparse-view scenarios.

3.6CVApr 24, 2025
ESDiff: Encoding Strategy-inspired Diffusion Model with Few-shot Learning for Color Image Inpainting

Junyan Zhang, Yan Li, Mengxiao Geng et al.

Image inpainting is a technique used to restore missing or damaged regions of an image. Traditional methods primarily utilize information from adjacent pixels for reconstructing missing areas, while they struggle to preserve complex details and structures. Simultaneously, models based on deep learning necessitate substantial amounts of training data. To address this challenge, an encoding strategy-inspired diffusion model with few-shot learning for color image inpainting is proposed in this paper. The main idea of this novel encoding strategy is the deployment of a "virtual mask" to construct high-dimensional objects through mutual perturbations between channels. This approach enables the diffusion model to capture diverse image representations and detailed features from limited training samples. Moreover, the encoding strategy leverages redundancy between channels, integrates with low-rank methods during iterative inpainting, and incorporates the diffusion model to achieve accurate information output. Experimental results indicate that our method exceeds current techniques in quantitative metrics, and the reconstructed images quality has been improved in aspects of texture and structural integrity, leading to more precise and coherent results.

3.6IVNov 6, 2024Code
Zero-shot Dynamic MRI Reconstruction with Global-to-local Diffusion Model

Yu Guan, Kunlong Zhang, Qi Qi et al.

Diffusion models have recently demonstrated considerable advancement in the generation and reconstruction of magnetic resonance imaging (MRI) data. These models exhibit great potential in handling unsampled data and reducing noise, highlighting their promise as generative models. However, their application in dynamic MRI remains relatively underexplored. This is primarily due to the substantial amount of fully-sampled data typically required for training, which is difficult to obtain in dynamic MRI due to its spatio-temporal complexity and high acquisition costs. To address this challenge, we propose a dynamic MRI reconstruction method based on a time-interleaved acquisition scheme, termed the Glob-al-to-local Diffusion Model. Specifically, fully encoded full-resolution reference data are constructed by merging under-sampled k-space data from adjacent time frames, generating two distinct bulk training datasets for global and local models. The global-to-local diffusion framework alternately optimizes global information and local image details, enabling zero-shot reconstruction. Extensive experiments demonstrate that the proposed method performs well in terms of noise reduction and detail preservation, achieving reconstruction quality comparable to that of supervised approaches.

3.6IVOct 30, 2024
Dynamic PET Image Prediction Using a Network Combining Reversible and Irreversible Modules

Jie Sun, Qian Xia, Chuanfu Sun et al.

Dynamic positron emission tomography (PET) images can reveal the distribution of tracers in the organism and the dynamic processes involved in biochemical reactions, and it is widely used in clinical practice. Despite the high effectiveness of dynamic PET imaging in studying the kinetics and metabolic processes of radiotracers. Pro-longed scan times can cause discomfort for both patients and medical personnel. This study proposes a dynamic frame prediction method for dynamic PET imaging, reduc-ing dynamic PET scanning time by applying a multi-module deep learning framework composed of reversible and irreversible modules. The network can predict kinetic parameter images based on the early frames of dynamic PET images, and then generate complete dynamic PET images. In validation experiments with simulated data, our network demonstrated good predictive performance for kinetic parameters and was able to reconstruct high-quality dynamic PET images. Additionally, in clinical data experiments, the network exhibited good generalization performance and attached that the proposed method has promising clinical application prospects.

11.9IVMay 9, 2024
MSDiff: Multi-Scale Diffusion Model for Ultra-Sparse View CT Reconstruction

Pinhuang Tan, Mengxiao Geng, Jingya Lu et al.

Computed Tomography (CT) technology reduces radiation haz-ards to the human body through sparse sampling, but fewer sampling angles pose challenges for image reconstruction. Score-based generative models are widely used in sparse-view CT re-construction, performance diminishes significantly with a sharp reduction in projection angles. Therefore, we propose an ultra-sparse view CT reconstruction method utilizing multi-scale dif-fusion models (MSDiff), designed to concentrate on the global distribution of information and facilitate the reconstruction of sparse views with local image characteristics. Specifically, the proposed model ingeniously integrates information from both comprehensive sampling and selectively sparse sampling tech-niques. Through precise adjustments in diffusion model, it is capable of extracting diverse noise distribution, furthering the understanding of the overall structure of images, and aiding the fully sampled model in recovering image information more effec-tively. By leveraging the inherent correlations within the projec-tion data, we have designed an equidistant mask, enabling the model to focus its attention more effectively. Experimental re-sults demonstrated that the multi-scale model approach signifi-cantly improved the quality of image reconstruction under ultra-sparse angles, with good generalization across various datasets.

7.6CVMay 9, 2024Code
DP-MDM: Detail-Preserving MR Reconstruction via Multiple Diffusion Models

Mengxiao Geng, Jiahao Zhu, Xiaolin Zhu et al.

Detail features of magnetic resonance images play a cru-cial role in accurate medical diagnosis and treatment, as they capture subtle changes that pose challenges for doc-tors when performing precise judgments. However, the widely utilized naive diffusion model has limitations, as it fails to accurately capture more intricate details. To en-hance the quality of MRI reconstruction, we propose a comprehensive detail-preserving reconstruction method using multiple diffusion models to extract structure and detail features in k-space domain instead of image do-main. Moreover, virtual binary modal masks are utilized to refine the range of values in k-space data through highly adaptive center windows, which allows the model to focus its attention more efficiently. Last but not least, an inverted pyramid structure is employed, where the top-down image information gradually decreases, ena-bling a cascade representation. The framework effective-ly represents multi-scale sampled data, taking into ac-count the sparsity of the inverted pyramid architecture, and utilizes cascade training data distribution to repre-sent multi-scale data. Through a step-by-step refinement approach, the method refines the approximation of de-tails. Finally, the proposed method was evaluated by con-ducting experiments on clinical and public datasets. The results demonstrate that the proposed method outper-forms other methods.

19.2IVSep 2, 2023Code
Correlated and Multi-frequency Diffusion Modeling for Highly Under-sampled MRI Reconstruction

Yu Guan, Chuanming Yu, Shiyu Lu et al.

Most existing MRI reconstruction methods perform tar-geted reconstruction of the entire MR image without tak-ing specific tissue regions into consideration. This may fail to emphasize the reconstruction accuracy on im-portant tissues for diagnosis. In this study, leveraging a combination of the properties of k-space data and the diffusion process, our novel scheme focuses on mining the multi-frequency prior with different strategies to pre-serve fine texture details in the reconstructed image. In addition, a diffusion process can converge more quickly if its target distribution closely resembles the noise distri-bution in the process. This can be accomplished through various high-frequency prior extractors. The finding further solidifies the effectiveness of the score-based gen-erative model. On top of all the advantages, our method improves the accuracy of MRI reconstruction and accel-erates sampling process. Experimental results verify that the proposed method successfully obtains more accurate reconstruction and outperforms state-of-the-art methods.

10.7IVFeb 3, 2022Code
PARCEL: Physics-based Unsupervised Contrastive Representation Learning for Multi-coil MR Imaging

Shanshan Wang, Ruoyou Wu, Cheng Li et al.

With the successful application of deep learning to magnetic resonance (MR) imaging, parallel imaging techniques based on neural networks have attracted wide attention. However, in the absence of high-quality, fully sampled datasets for training, the performance of these methods is limited. And the interpretability of models is not strong enough. To tackle this issue, this paper proposes a Physics-bAsed unsupeRvised Contrastive rEpresentation Learning (PARCEL) method to speed up parallel MR imaging. Specifically, PARCEL has a parallel framework to contrastively learn two branches of model-based unrolling networks from augmented undersampled multi-coil k-space data. A sophisticated co-training loss with three essential components has been designed to guide the two networks in capturing the inherent features and representations for MR images. And the final MR image is reconstructed with the trained contrastive networks. PARCEL was evaluated on two vivo datasets and compared to five state-of-the-art methods. The results show that PARCEL is able to learn essential representations for accurate MR reconstruction without relying on fully sampled datasets.

2.6CVJan 25, 2022Code
Universal Generative Modeling for Calibration-free Parallel Mr Imaging

Wanqing Zhu, Bing Guan, Shanshan Wang et al.

The integration of compressed sensing and parallel imaging (CS-PI) provides a robust mechanism for accelerating MRI acquisitions. However, most such strategies require the explicit formation of either coil sensitivity profiles or a cross-coil correlation operator, and as a result reconstruction corresponds to solving a challenging bilinear optimization problem. In this work, we present an unsupervised deep learning framework for calibration-free parallel MRI, coined universal generative modeling for parallel imaging (UGM-PI). More precisely, we make use of the merits of both wavelet transform and the adaptive iteration strategy in a unified framework. We train a powerful noise conditional score network by forming wavelet tensor as the network input at the training phase. Experimental results on both physical phantom and in vivo datasets implied that the proposed method is comparable and even superior to state-of-the-art CS-PI reconstruction approaches.

1.4CVJan 19, 2022
Virtual Coil Augmentation Technology for MR Coil Extrapolation via Deep Learning

Cailian Yang, Xianghao Liao, Yuhao Wang et al.

Magnetic resonance imaging (MRI) is a widely used medical imaging modality. However, due to the limitations in hardware, scan time, and throughput, it is often clinically challenging to obtain high-quality MR images. In this article, we propose a method of using artificial intelligence to expand the channel to achieve the goal of generating the virtual coils. The main characteristic of our work is utilizing dummy variable technology to expand/extrapolate the receive coils in both image and k-space domains. The high-dimensional information formed by channel expansion is used as the prior information to improve the reconstruction effect of parallel imaging. Two main components are incorporated into the network design, namely variable augmentation technology and sum of squares (SOS) objective function. Variable augmentation provides the network with more high-dimensional prior information, which is helpful for the network to extract the deep feature information of the data. The SOS objective function is employed to solve the deficiency of k-space data training while speeding up convergence. Experimental results demonstrated its great potentials in super-resolution of MR images and accelerated parallel imaging reconstruction.

1.4CVJan 19, 2022Code
Variable Augmented Network for Invertible MR Coil Compression

Xianghao Liao, Shanshan Wang, Lanlan Tu et al.

A large number of coils are able to provide enhanced signal-to-noise ratio and improve imaging performance in parallel imaging. Nevertheless, the increasing growth of coil number simultaneously aggravates the drawbacks of data storage and reconstruction speed, especially in some iterative reconstructions. Coil compression addresses these issues by generating fewer virtual coils. In this work, a novel variable augmentation network for invertible coil compression termed VAN-ICC is presented. It utilizes inherent reversibility of normalizing flow-based models for high-precision compression and invertible recovery. By employing the variable augmentation technology to image/k-space variables from multi-coils, VAN-ICC trains invertible networks by finding an invertible and bijective function, which can map the original data to the compressed counterpart and vice versa. Experiments conducted on both fully-sampled and under-sampled data verified the effectiveness and flexibility of VAN-ICC. Quantitative and qualitative comparisons with traditional non-deep learning-based approaches demonstrated that VAN-ICC can carry much higher compression effects. Additionally, its performance is not susceptible to different number of virtual coils.

15.8IVSep 7, 2021Code
MRI Reconstruction Using Deep Energy-Based Model

Yu Guan, Zongjiang Tu, Shanshan Wang et al.

Purpose: Although recent deep energy-based generative models (EBMs) have shown encouraging results in many image generation tasks, how to take advantage of the self-adversarial cogitation in deep EBMs to boost the performance of Magnetic Resonance Imaging (MRI) reconstruction is still desired. Methods: With the successful application of deep learning in a wide range of MRI reconstruction, a line of emerging research involves formulating an optimization-based reconstruction method in the space of a generative model. Leveraging this, a novel regularization strategy is introduced in this article which takes advantage of self-adversarial cogitation of the deep energy-based model. More precisely, we advocate for alternative learning a more powerful energy-based model with maximum likelihood estimation to obtain the deep energy-based information, represented as image prior. Simultaneously, implicit inference with Langevin dynamics is a unique property of re-construction. In contrast to other generative models for reconstruction, the proposed method utilizes deep energy-based information as the image prior in reconstruction to improve the quality of image. Results: Experiment results that imply the proposed technique can obtain remarkable performance in terms of high reconstruction accuracy that is competitive with state-of-the-art methods, and does not suffer from mode collapse. Conclusion: Algorithmically, an iterative approach was presented to strengthen EBM training with the gradient of energy network. The robustness and the reproducibility of the algorithm were also experimentally validated. More importantly, the proposed reconstruction framework can be generalized for most MRI reconstruction scenarios.

4.4IVSep 2, 2021Code
Variable Augmented Network for Invertible Modality Synthesis-Fusion

Yuhao Wang, Ruirui Liu, Zihao Li et al.

As an effective way to integrate the information contained in multiple medical images under different modalities, medical image synthesis and fusion have emerged in various clinical applications such as disease diagnosis and treatment planning. In this paper, an invertible and variable augmented network (iVAN) is proposed for medical image synthesis and fusion. In iVAN, the channel number of the network input and output is the same through variable augmentation technology, and data relevance is enhanced, which is conducive to the generation of characterization information. Meanwhile, the invertible network is used to achieve the bidirectional inference processes. Due to the invertible and variable augmentation schemes, iVAN can not only be applied to the mappings of multi-input to one-output and multi-input to multi-output, but also be applied to one-input to multi-output. Experimental results demonstrated that the proposed method can obtain competitive or superior performance in comparison to representative medical image synthesis and fusion methods.

4.4IVAug 14, 2021Code
High-dimensional Assisted Generative Model for Color Image Restoration

Kai Hong, Chunhua Wu, Cailian Yang et al.

This work presents an unsupervised deep learning scheme that exploiting high-dimensional assisted score-based generative model for color image restoration tasks. Considering that the sample number and internal dimension in score-based generative model have key influence on estimating the gradients of data distribution, two different high-dimensional ways are proposed: The channel-copy transformation increases the sample number and the pixel-scale transformation decreases feasible space dimension. Subsequently, a set of high-dimensional tensors represented by these transformations are used to train the network through denoising score matching. Then, sampling is performed by annealing Langevin dynamics and alternative data-consistency update. Furthermore, to alleviate the difficulty of learning high-dimensional representation, a progressive strategy is proposed to leverage the performance. The proposed unsupervised learning and iterative restoration algo-rithm, which involves a pre-trained generative network to obtain prior, has transparent and clear interpretation compared to other data-driven approaches. Experimental results on demosaicking and inpainting conveyed the remarkable performance and diversity of our proposed method.

9.4CVJul 9, 2021Code
Wavelet Transform-assisted Adaptive Generative Modeling for Colorization

Jin Li, Wanyun Li, Zichen Xu et al.

Unsupervised deep learning has recently demonstrated the promise of producing high-quality samples. While it has tremendous potential to promote the image colorization task, the performance is limited owing to the high-dimension of data manifold and model capability. This study presents a novel scheme that exploits the score-based generative model in wavelet domain to address the issues. By taking advantage of the multi-scale and multi-channel representation via wavelet transform, the proposed model learns the richer priors from stacked coarse and detailed wavelet coefficient components jointly and effectively. This strategy also reduces the dimension of the original manifold and alleviates the curse of dimensionality, which is beneficial for estimation and sampling. Moreover, dual consistency terms in the wavelet domain, namely data-consistency and structure-consistency are devised to leverage colorization task better. Specifically, in the training phase, a set of multi-channel tensors consisting of wavelet coefficients is used as the input to train the network with denoising score matching. In the inference phase, samples are iteratively generated via annealed Langevin dynamics with data and structure consistencies. Experiments demonstrated remarkable improvements of the proposed method on both generation and colorization quality, particularly in colorization robustness and diversity.

1.2CVDec 28, 2020Code
Joint Intensity-Gradient Guided Generative Modeling for Colorization

Kai Hong, Jin Li, Wanyun Li et al.

This paper proposes an iterative generative model for solving the automatic colorization problem. Although previous researches have shown the capability to generate plausible color, the edge color overflow and the requirement of the reference images still exist. The starting point of the unsupervised learning in this study is the observation that the gradient map possesses latent information of the image. Therefore, the inference process of the generative modeling is conducted in joint intensity-gradient domain. Specifically, a set of intensity-gradient formed high-dimensional tensors, as the network input, are used to train a powerful noise conditional score network at the training phase. Furthermore, the joint intensity-gradient constraint in data-fidelity term is proposed to limit the degree of freedom within generative model at the iterative colorization stage, and it is conducive to edge-preserving. Extensive experiments demonstrated that the system outperformed state-of-the-art methods whether in quantitative comparisons or user study.

5.2IVSep 27, 2020Code
Iterative Reconstruction for Low-Dose CT using Deep Gradient Priors of Generative Model

Zhuonan He, Yikun Zhang, Yu Guan et al.

Dose reduction in computed tomography (CT) is essential for decreasing radiation risk in clinical applications. Iterative reconstruction is one of the most promising ways to compensate for the increased noise due to reduction of photon flux. Rather than most existing prior-driven algorithms that benefit from manually designed prior functions or supervised learning schemes, in this work we integrate the data-consistency as a conditional term into the iterative generative model for low-dose CT. At the stage of prior learning, the gradient of data density is directly learned from normal-dose CT images as a prior. Then at the iterative reconstruction stage, the stochastic gradient descent is employed to update the trained prior with annealed and conditional schemes. The distance between the reconstructed image and the manifold is minimized along with data fidelity during reconstruction. Experimental comparisons demonstrated the noise reduction and detail preservation abilities of the proposed method.

11.4IVAug 14, 2020Code
Homotopic Gradients of Generative Density Priors for MR Image Reconstruction

Cong Quan, Jinjie Zhou, Yuanzheng Zhu et al.

Deep learning, particularly the generative model, has demonstrated tremendous potential to significantly speed up image reconstruction with reduced measurements recently. Rather than the existing generative models that often optimize the density priors, in this work, by taking advantage of the denoising score matching, homotopic gradients of generative density priors (HGGDP) are proposed for magnetic resonance imaging (MRI) reconstruction. More precisely, to tackle the low-dimensional manifold and low data density region issues in generative density prior, we estimate the target gradients in higher-dimensional space. We train a more powerful noise conditional score network by forming high-dimensional tensor as the network input at the training phase. More artificial noise is also injected in the embedding space. At the reconstruction stage, a homotopy method is employed to pursue the density prior, such as to boost the reconstruction performance. Experiment results imply the remarkable performance of HGGDP in terms of high reconstruction accuracy; only 10% of the k-space data can still generate images of high quality as effectively as standard MRI reconstruction with the fully sampled data.