Nikolay Fedorov, Akito Monden, Hiroki Inayoshi et al.
Software birthmarks provide a robust approach to detecting code plagiarism even under substantial modifications, while distinguishing independently developed software. Existing similarity measures are typically applied at the module level (e.g., source or class files). However, in practice, software reuse often occurs at the project level, where only a subset of modules may be reused. This setting introduces two key challenges: (1) partial reuse, where reused modules constitute only a small fraction of the project, and (2) incidental similarity from small modules, which can lead to false positives. In this paper, we establish a framework for project-wise birthmark comparison based on a symmetric aggregation of module-level similarities. On top of this framework, we propose two complementary mechanisms to address the above challenges. First, we introduce a weighting scheme that assigns higher importance to larger modules, reducing the influence of noisy matches from small modules. Second, we propose a partial similarity method that focuses on the top fraction of highly similar module pairs, enabling robust detection of partial reuse. We evaluate the proposed approach on 35 open-source Java projects across ten categories, where different versions of the same project are treated as reuse cases. The dataset and experimental artifacts are made publicly available to support reproducibility. Performance is assessed using two complementary properties of software birthmarks, resilience and credibility, combined via their harmonic mean. The results show that the proposed method consistently outperforms existing approaches, achieving robust and stable detection of partial code reuse at the project level.