Vu Minh Hieu Phan

Bowen Zhang, Liyang Liu, Minh Hieu Phan et al.

This paper investigates the capability of plain Vision Transformers (ViTs) for semantic segmentation using the encoder-decoder framework and introduces \textbf{SegViTv2}. In this study, we introduce a novel Attention-to-Mask (\atm) module to design a lightweight decoder effective for plain ViT. The proposed ATM converts the global attention map into semantic masks for high-quality segmentation results. Our decoder outperforms the popular decoder UPerNet using various ViT backbones while consuming only about $5\%$ of the computational cost. For the encoder, we address the concern of the relatively high computational cost in the ViT-based encoders and propose a \emph{Shrunk++} structure that incorporates edge-aware query-based down-sampling (EQD) and query-based upsampling (QU) modules. The Shrunk++ structure reduces the computational cost of the encoder by up to $50\%$ while maintaining competitive performance. Furthermore, we propose to adapt SegViT for continual semantic segmentation, demonstrating nearly zero forgetting of previously learned knowledge. Experiments show that our proposed SegViTv2 surpasses recent segmentation methods on three popular benchmarks including ADE20k, COCO-Stuff-10k and PASCAL-Context datasets. The code is available through the following link: \url{https://github.com/zbwxp/SegVit}.

Minh Hieu Phan, Zhibin Liao, Johan W. Verjans et al.

Medical image synthesis is a challenging task due to the scarcity of paired data. Several methods have applied CycleGAN to leverage unpaired data, but they often generate inaccurate mappings that shift the anatomy. This problem is further exacerbated when the images from the source and target modalities are heavily misaligned. Recently, current methods have aimed to address this issue by incorporating a supplementary segmentation network. Unfortunately, this strategy requires costly and time-consuming pixel-level annotations. To overcome this problem, this paper proposes MaskGAN, a novel and cost-effective framework that enforces structural consistency by utilizing automatically extracted coarse masks. Our approach employs a mask generator to outline anatomical structures and a content generator to synthesize CT contents that align with these structures. Extensive experiments demonstrate that MaskGAN outperforms state-of-the-art synthesis methods on a challenging pediatric dataset, where MR and CT scans are heavily misaligned due to rapid growth in children. Specifically, MaskGAN excels in preserving anatomical structures without the need for expert annotations. The code for this paper can be found at https://github.com/HieuPhan33/MaskGAN.

Liyang Liu, Zihan Wang, Minh Hieu Phan et al.

Current knowledge distillation approaches in semantic segmentation tend to adopt a holistic approach that treats all spatial locations equally. However, for dense prediction, students' predictions on edge regions are highly uncertain due to contextual information leakage, requiring higher spatial sensitivity knowledge than the body regions. To address this challenge, this paper proposes a novel approach called boundary-privileged knowledge distillation (BPKD). BPKD distills the knowledge of the teacher model's body and edges separately to the compact student model. Specifically, we employ two distinct loss functions: (i) edge loss, which aims to distinguish between ambiguous classes at the pixel level in edge regions; (ii) body loss, which utilizes shape constraints and selectively attends to the inner-semantic regions. Our experiments demonstrate that the proposed BPKD method provides extensive refinements and aggregation for edge and body regions. Additionally, the method achieves state-of-the-art distillation performance for semantic segmentation on three popular benchmark datasets, highlighting its effectiveness and generalization ability. BPKD shows consistent improvements across a diverse array of lightweight segmentation structures, including both CNNs and transformers, underscoring its architecture-agnostic adaptability. The code is available at \url{https://github.com/AkideLiu/BPKD}.

Tuan Dung Nguyen, Minh Khoi Ho, Qi Chen et al.

Large vision-language models (LVLMs) achieve strong performance on visual reasoning tasks but remain highly susceptible to hallucination. Existing detection methods predominantly rely on coarse, whole-image measures of how an object token relates to the input image. This global strategy is limited: hallucinated tokens may exhibit weak but widely scattered correlations across many local regions, which aggregate into deceptively high overall relevance, thus evading the current global hallucination detectors. We begin with a simple yet critical observation: a faithful object token must be strongly grounded in a specific image region. Building on this insight, we introduce a patch-level hallucination detection framework that examines fine-grained token-level interactions across model layers. Our analysis uncovers two characteristic signatures of hallucinated tokens: (i) they yield diffuse, non-localized attention patterns, in contrast to the compact, well-focused attention seen in faithful tokens; and (ii) they fail to exhibit meaningful semantic alignment with any visual region. Guided by these findings, we develop a lightweight and interpretable detection method that leverages patch-level statistical features, combined with hidden-layer representations. Our approach achieves up to 90% accuracy in token-level hallucination detection, demonstrating the superiority of fine-grained structural analysis for detecting hallucinations.

Townim F. Chowdhury, Vu Minh Hieu Phan, Kewen Liao et al.

The integration of vision-language models such as CLIP and Concept Bottleneck Models (CBMs) offers a promising approach to explaining deep neural network (DNN) decisions using concepts understandable by humans, addressing the black-box concern of DNNs. While CLIP provides both explainability and zero-shot classification capability, its pre-training on generic image and text data may limit its classification accuracy and applicability to medical image diagnostic tasks, creating a transfer learning problem. To maintain explainability and address transfer learning needs, CBM methods commonly design post-processing modules after the bottleneck module. However, this way has been ineffective. This paper takes an unconventional approach by re-examining the CBM framework through the lens of its geometrical representation as a simple linear classification system. The analysis uncovers that post-CBM fine-tuning modules merely rescale and shift the classification outcome of the system, failing to fully leverage the system's learning potential. We introduce an adaptive module strategically positioned between CLIP and CBM to bridge the gap between source and downstream domains. This simple yet effective approach enhances classification performance while preserving the explainability afforded by the framework. Our work offers a comprehensive solution that encompasses the entire process, from concept discovery to model training, providing a holistic recipe for leveraging the strengths of GPT, CLIP, and CBM.

Anh-Dzung Doan, Vu Minh Hieu Phan, Surabhi Gupta et al.

Infrared imaging offers resilience against changing lighting conditions by capturing object temperatures. Yet, in few scenarios, its lack of visual details compared to daytime visible images, poses a significant challenge for human and machine interpretation. This paper proposes a novel diffusion method, dubbed Temporally Consistent Patch Diffusion Models (TC-DPM), for infrared-to-visible video translation. Our method, extending the Patch Diffusion Model, consists of two key components. Firstly, we propose a semantic-guided denoising, leveraging the strong representations of foundational models. As such, our method faithfully preserves the semantic structure of generated visible images. Secondly, we propose a novel temporal blending module to guide the denoising trajectory, ensuring the temporal consistency between consecutive frames. Experiment shows that TC-PDM outperforms state-of-the-art methods by 35.3% in FVD for infrared-to-visible video translation and by 6.1% in AP50 for day-to-night object detection. Our code is publicly available at https://github.com/dzungdoan6/tc-pdm

Biao Wu, Yutong Xie, Zeyu Zhang et al.

Vision-and-language pretraining (VLP) in the medical field utilizes contrastive learning on image-text pairs to achieve effective transfer across tasks. Yet, current VLP approaches with the masked modeling strategy face two challenges when applied to the medical domain. First, current models struggle to accurately reconstruct key pathological features due to the scarcity of medical data. Second, most methods only adopt either paired image-text or image-only data, failing to exploit the combination of both paired and unpaired data. To this end, this paper proposes the MMCLIP (Masked Medical Contrastive Language-Image Pre-Training) framework to enhance pathological learning and feature learning via unpaired data. First, we introduce the attention-masked image modeling (AttMIM) and entity-driven masked language modeling module (EntMLM), which learns to reconstruct pathological visual and textual tokens via multi-modal feature interaction, thus improving medical-enhanced features. The AttMIM module masks a portion of the image features that are highly responsive to textual features. This allows MMCLIP to improve the reconstruction of highly similar image data in medicine efficiency. Second, our MMCLIP capitalizes unpaired data to enhance multimodal learning by introducing disease-kind prompts. The experimental results show that MMCLIP achieves SOTA for zero-shot and fine-tuning classification performance on five datasets. Our code will be available at https://github.com/AIGeeksGroup/MMCLIP.

Jinchao Ge, Zeyu Zhang, Minh Hieu Phan et al.

Active learning enhances annotation efficiency by selecting the most revealing samples for labeling, thereby reducing reliance on extensive human input. Previous methods in semantic segmentation have centered on individual pixels or small areas, neglecting the rich patterns in natural images and the power of advanced pre-trained models. To address these challenges, we propose three key contributions: Firstly, we introduce Entity-Superpixel Annotation (ESA), an innovative and efficient active learning strategy which utilizes a class-agnostic mask proposal network coupled with super-pixel grouping to capture local structural cues. Additionally, our method selects a subset of entities within each image of the target domain, prioritizing superpixels with high entropy to ensure comprehensive representation. Simultaneously, it focuses on a limited number of key entities, thereby optimizing for efficiency. By utilizing an annotator-friendly design that capitalizes on the inherent structure of images, our approach significantly outperforms existing pixel-based methods, achieving superior results with minimal queries, specifically reducing click cost by 98% and enhancing performance by 1.71%. For instance, our technique requires a mere 40 clicks for annotation, a stark contrast to the 5000 clicks demanded by conventional methods.

Vu Minh Hieu Phan, Yutong Xie, Yuankai Qi et al.

Medical vision language pre-training (VLP) has emerged as a frontier of research, enabling zero-shot pathological recognition by comparing the query image with the textual descriptions for each disease. Due to the complex semantics of biomedical texts, current methods struggle to align medical images with key pathological findings in unstructured reports. This leads to the misalignment with the target disease's textual representation. In this paper, we introduce a novel VLP framework designed to dissect disease descriptions into their fundamental aspects, leveraging prior knowledge about the visual manifestations of pathologies. This is achieved by consulting a large language model and medical experts. Integrating a Transformer module, our approach aligns an input image with the diverse elements of a disease, generating aspect-centric image representations. By consolidating the matches from each aspect, we improve the compatibility between an image and its associated disease. Additionally, capitalizing on the aspect-oriented representations, we present a dual-head Transformer tailored to process known and unknown diseases, optimizing the comprehensive detection efficacy. Conducting experiments on seven downstream datasets, ours improves the accuracy of recent methods by up to 8.56% and 17.26% for seen and unseen categories, respectively. Our code is released at https://github.com/HieuPhan33/MAVL.

Qi Chen, Ruoshan Zhao, Sinuo Wang et al.

Medical vision-and-language models (MVLMs) have attracted substantial interest due to their capability to offer a natural language interface for interpreting complex medical data. Their applications are versatile and have the potential to improve diagnostic accuracy and decision-making for individual patients while also contributing to enhanced public health monitoring, disease surveillance, and policy-making through more efficient analysis of large data sets. MVLMS integrate natural language processing with medical images to enable a more comprehensive and contextual understanding of medical images alongside their corresponding textual information. Unlike general vision-and-language models trained on diverse, non-specialized datasets, MVLMs are purpose-built for the medical domain, automatically extracting and interpreting critical information from medical images and textual reports to support clinical decision-making. Popular clinical applications of MVLMs include automated medical report generation, medical visual question answering, medical multimodal segmentation, diagnosis and prognosis and medical image-text retrieval. Here, we provide a comprehensive overview of MVLMs and the various medical tasks to which they have been applied. We conduct a detailed analysis of various vision-and-language model architectures, focusing on their distinct strategies for cross-modal integration/exploitation of medical visual and textual features. We also examine the datasets used for these tasks and compare the performance of different models based on standardized evaluation metrics. Furthermore, we highlight potential challenges and summarize future research trends and directions. The full collection of papers and codes is available at: https://github.com/YtongXie/Medical-Vision-and-Language-Tasks-and-Methodologies-A-Survey.

Xuyin Qi, Zeyu Zhang, Aaron Berliano Handoko et al.

Prostate cancer, a growing global health concern, necessitates precise diagnostic tools, with Magnetic Resonance Imaging (MRI) offering high-resolution soft tissue imaging that significantly enhances diagnostic accuracy. Recent advancements in explainable AI and representation learning have significantly improved prostate cancer diagnosis by enabling automated and precise lesion classification. However, existing explainable AI methods, particularly those based on frameworks like generative adversarial networks (GANs), are predominantly developed for natural image generation, and their application to medical imaging often leads to suboptimal performance due to the unique characteristics and complexity of medical image. To address these challenges, our paper introduces three key contributions. First, we propose ProjectedEx, a generative framework that provides interpretable, multi-attribute explanations, effectively linking medical image features to classifier decisions. Second, we enhance the encoder module by incorporating feature pyramids, which enables multiscale feedback to refine the latent space and improves the quality of generated explanations. Additionally, we conduct comprehensive experiments on both the generator and classifier, demonstrating the clinical relevance and effectiveness of ProjectedEx in enhancing interpretability and supporting the adoption of AI in medical settings. Code will be released at https://github.com/Richardqiyi/ProjectedEx

Ta Duc Huy, Sen Kim Tran, Phan Nguyen et al.

The ability to interpret and intervene model decisions is important for the adoption of computer-aided diagnosis methods in clinical workflows. Recent concept-based methods link the model predictions with interpretable concepts and modify their activation scores to interact with the model. However, these concepts are at the image level, which hinders the model from pinpointing the exact patches the concepts are activated. Alternatively, prototype-based methods learn representations from training image patches and compare these with test image patches, using the similarity scores for final class prediction. However, interpreting the underlying concepts of these patches can be challenging and often necessitates post-hoc guesswork. To address this issue, this paper introduces the novel Concept-based Similarity Reasoning network (CSR), which offers (i) patch-level prototype with intrinsic concept interpretation, and (ii) spatial interactivity. First, the proposed CSR provides localized explanation by grounding prototypes of each concept on image regions. Second, our model introduces novel spatial-level interaction, allowing doctors to engage directly with specific image areas, making it an intuitive and transparent tool for medical imaging. CSR improves upon prior state-of-the-art interpretable methods by up to 4.5\% across three biomedical datasets. Our code is released at https://github.com/tadeephuy/InteractCSR.

Townim Faisal Chowdhury, Kewen Liao, Vu Minh Hieu Phan et al.

Deep Neural Networks (DNNs) are widely used for visual classification tasks, but their complex computation process and black-box nature hinder decision transparency and interpretability. Class activation maps (CAMs) and recent variants provide ways to visually explain the DNN decision-making process by displaying 'attention' heatmaps of the DNNs. Nevertheless, the CAM explanation only offers relative attention information, that is, on an attention heatmap, we can interpret which image region is more or less important than the others. However, these regions cannot be meaningfully compared across classes, and the contribution of each region to the model's class prediction is not revealed. To address these challenges that ultimately lead to better DNN Interpretation, in this paper, we propose CAPE, a novel reformulation of CAM that provides a unified and probabilistically meaningful assessment of the contributions of image regions. We quantitatively and qualitatively compare CAPE with state-of-the-art CAM methods on CUB and ImageNet benchmark datasets to demonstrate enhanced interpretability. We also test on a cytology imaging dataset depicting a challenging Chronic Myelomonocytic Leukemia (CMML) diagnosis problem. Code is available at: https://github.com/AIML-MED/CAPE.

Runhao Zeng, Jiaqi Mao, Minghao Lai et al.

Video grounding (VG) task focuses on locating specific moments in a video based on a query, usually in text form. However, traditional VG struggles with some scenarios like streaming video or queries using visual cues. To fill this gap, we present a new task named Online Video Grounding with Hybrid-modal Queries (OVG-HQ), which enables online segment localization using text, images, video segments, and their combinations. This task poses two new challenges: limited context in online settings and modality imbalance during training, where dominant modalities overshadow weaker ones. To address these, we propose OVG-HQ-Unify, a unified framework featuring a Parametric Memory Block (PMB) that retain previously learned knowledge to enhance current decision and a cross-modal distillation strategy that guides the learning of non-dominant modalities. This design enables a single model to effectively handle hybrid-modal queries. Due to the lack of suitable datasets, we construct QVHighlights-Unify, an expanded dataset with multi-modal queries. Besides, since offline metrics overlook prediction timeliness, we adapt them to the online setting, introducing oR@n, IoU=m, and online mean Average Precision (omAP) to evaluate both accuracy and efficiency. Experiments show that our OVG-HQ-Unify outperforms existing models, offering a robust solution for online, hybrid-modal video grounding. Source code and datasets are available at https://github.com/maojiaqi2324/OVG-HQ.

Jinquan Guan, Qi Chen, Lizhou Liang et al.

Artificial intelligence (AI)-based chest X-ray (CXR) interpretation assistants have demonstrated significant progress and are increasingly being applied in clinical settings. However, contemporary medical AI models often adhere to a simplistic input-to-output paradigm, directly processing an image and an instruction to generate a result, where the instructions may be integral to the model's architecture. This approach overlooks the modeling of the inherent diagnostic reasoning in chest X-ray interpretation. Such reasoning is typically sequential, where each interpretive stage considers the images, the current task, and the contextual information from previous stages. This oversight leads to several shortcomings, including misalignment with clinical scenarios, contextless reasoning, and untraceable errors. To fill this gap, we construct CXRTrek, a new multi-stage visual question answering (VQA) dataset for CXR interpretation. The dataset is designed to explicitly simulate the diagnostic reasoning process employed by radiologists in real-world clinical settings for the first time. CXRTrek covers 8 sequential diagnostic stages, comprising 428,966 samples and over 11 million question-answer (Q&A) pairs, with an average of 26.29 Q&A pairs per sample. Building on the CXRTrek dataset, we propose a new vision-language large model (VLLM), CXRTrekNet, specifically designed to incorporate the clinical reasoning flow into the VLLM framework. CXRTrekNet effectively models the dependencies between diagnostic stages and captures reasoning patterns within the radiological context. Trained on our dataset, the model consistently outperforms existing medical VLLMs on the CXRTrek benchmarks and demonstrates superior generalization across multiple tasks on five diverse external datasets. The dataset and model can be found in our repository (https://github.com/guanjinquan/CXRTrek).

Vu Minh Hieu Phan, Yutong Xie, Bowen Zhang et al.

Unpaired medical image synthesis aims to provide complementary information for an accurate clinical diagnostics, and address challenges in obtaining aligned multi-modal medical scans. Transformer-based models excel in imaging translation tasks thanks to their ability to capture long-range dependencies. Although effective in supervised training settings, their performance falters in unpaired image synthesis, particularly in synthesizing structural details. This paper empirically demonstrates that, lacking strong inductive biases, Transformer can converge to non-optimal solutions in the absence of paired data. To address this, we introduce UNet Structured Transformer (UNest), a novel architecture incorporating structural inductive biases for unpaired medical image synthesis. We leverage the foundational Segment-Anything Model to precisely extract the foreground structure and perform structural attention within the main anatomy. This guides the model to learn key anatomical regions, thus improving structural synthesis under the lack of supervision in unpaired training. Evaluated on two public datasets, spanning three modalities, i.e., MR, CT, and PET, UNest improves recent methods by up to 19.30% across six medical image synthesis tasks. Our code is released at https://github.com/HieuPhan33/MICCAI2024-UNest.

Dung Nguyen, Minh Khoi Ho, Huy Ta et al.

Medical Large Multi-modal Models (LMMs) have demonstrated remarkable capabilities in medical data interpretation. However, these models frequently generate hallucinations contradicting source evidence, particularly due to inadequate localization reasoning. This work reveals a critical limitation in current medical LMMs: instead of analyzing relevant pathological regions, they often rely on linguistic patterns or attend to irrelevant image areas when responding to disease-related queries. To address this, we introduce HEAL-MedVQA (Hallucination Evaluation via Localization MedVQA), a comprehensive benchmark designed to evaluate LMMs' localization abilities and hallucination robustness. HEAL-MedVQA features (i) two innovative evaluation protocols to assess visual and textual shortcut learning, and (ii) a dataset of 67K VQA pairs, with doctor-annotated anatomical segmentation masks for pathological regions. To improve visual reasoning, we propose the Localize-before-Answer (LobA) framework, which trains LMMs to localize target regions of interest and self-prompt to emphasize segmented pathological areas, generating grounded and reliable answers. Experimental results demonstrate that our approach significantly outperforms state-of-the-art biomedical LMMs on the challenging HEAL-MedVQA benchmark, advancing robustness in medical VQA.

Ta Duc Huy, Duy Anh Huynh, Yutong Xie et al.

Visual grounding (VG) is the capability to identify the specific regions in an image associated with a particular text description. In medical imaging, VG enhances interpretability by highlighting relevant pathological features corresponding to textual descriptions, improving model transparency and trustworthiness for wider adoption of deep learning models in clinical practice. Current models struggle to associate textual descriptions with disease regions due to inefficient attention mechanisms and a lack of fine-grained token representations. In this paper, we empirically demonstrate two key observations. First, current VLMs assign high norms to background tokens, diverting the model's attention from regions of disease. Second, the global tokens used for cross-modal learning are not representative of local disease tokens. This hampers identifying correlations between the text and disease tokens. To address this, we introduce simple, yet effective Disease-Aware Prompting (DAP) process, which uses the explainability map of a VLM to identify the appropriate image features. This simple strategy amplifies disease-relevant regions while suppressing background interference. Without any additional pixel-level annotations, DAP improves visual grounding accuracy by 20.74% compared to state-of-the-art methods across three major chest X-ray datasets.

Abin Shoby, Ta Duc Huy, Tuan Dung Nguyen et al.

Vision Language models (VLMs) often hallucinate non-existent objects. Detecting hallucination is analogous to detecting deception: a single final statement is insufficient, one must examine the underlying reasoning process. Yet existing detectors rely mostly on final-layer signals. Attention-based methods assume hallucinated tokens exhibit low attention, while entropy-based ones use final-step uncertainty. Our analysis reveals the opposite: hallucinated objects can exhibit peaked attention due to contextual priors; and models often express high confidence because intermediate layers have already converged to an incorrect hypothesis. We show that the key to hallucination detection lies within the model's thought process, not its final output. By probing decoder layers, we uncover a previously overlooked behavior, overthinking: models repeatedly revise object hypotheses across layers before committing to an incorrect answer. Once the model latches onto a confounded hypothesis, it can propagate through subsequent layers, ultimately causing hallucination. To capture this behavior, we introduce the Overthinking Score, a metric to measure how many competing hypotheses the model entertains and how unstable these hypotheses are across layers. This score significantly improves hallucination detection: 78.9% F1 on MSCOCO and 71.58% on AMBER.

Townim Faisal Chowdhury, Vu Minh Hieu Phan, Kewen Liao et al.

Counterfactual explanations (CFE) for deep image classifiers aim to reveal how minimal input changes lead to different model decisions, providing critical insights for model interpretation and improvement. However, existing CFE methods often rely on additional image encoders and generative models to create plausible images, neglecting the classifier's own feature space and decision boundaries. As such, they do not explain the intrinsic feature space and decision boundaries learned by the classifier. To address this limitation, we propose Mirror-CFE, a novel method that generates faithful counterfactual explanations by operating directly in the classifier's feature space, treating decision boundaries as mirrors that ``reflect'' feature representations in the mirror. Mirror-CFE learns a mapping function from feature space to image space while preserving distance relationships, enabling smooth transitions between source images and their counterfactuals. Through extensive experiments on four image datasets, we demonstrate that Mirror-CFE achieves superior performance in validity while maintaining input resemblance compared to state-of-the-art explanation methods. Finally, mirror-CFE provides interpretable visualization of the classifier's decision process by generating step-wise transitions that reveal how features evolve as classification confidence changes.

Jinchao Ge, Bowen Zhang, Akide Liu et al.

Class-incremental semantic segmentation (CSS) requires that a model learn to segment new classes without forgetting how to segment previous ones: this is typically achieved by distilling the current knowledge and incorporating the latest data. However, bypassing iterative distillation by directly transferring outputs of initial classes to the current learning task is not supported in existing class-specific CSS methods. Via Softmax, they enforce dependency between classes and adjust the output distribution at each learning step, resulting in a large probability distribution gap between initial and current tasks. We introduce a simple, yet effective Class Independent Transformation (CIT) that converts the outputs of existing semantic segmentation models into class-independent forms with negligible cost or performance loss. By utilizing class-independent predictions facilitated by CIT, we establish an accumulative distillation framework, ensuring equitable incorporation of all class information. We conduct extensive experiments on various segmentation architectures, including DeepLabV3, Mask2Former, and SegViTv2. Results from these experiments show minimal task forgetting across different datasets, with less than 5% for ADE20K in the most challenging 11 task configurations and less than 1% across all configurations for the PASCAL VOC 2012 dataset.

Corby Rosset, Chenyan Xiong, Minh Phan et al.

How much knowledge do pretrained language models hold? Recent research observed that pretrained transformers are adept at modeling semantics but it is unclear to what degree they grasp human knowledge, or how to ensure they do so. In this paper we incorporate knowledge-awareness in language model pretraining without changing the transformer architecture, inserting explicit knowledge layers, or adding external storage of semantic information. Rather, we simply signal the existence of entities to the input of the transformer in pretraining, with an entity-extended tokenizer; and at the output, with an additional entity prediction task. Our experiments show that solely by adding these entity signals in pretraining, significantly more knowledge is packed into the transformer parameters: we observe improved language modeling accuracy, factual correctness in LAMA knowledge probing tasks, and semantics in the hidden representations through edge probing.We also show that our knowledge-aware language model (KALM) can serve as a drop-in replacement for GPT-2 models, significantly improving downstream tasks like zero-shot question-answering with no task-related training.