Kenneth Enevoldsen

Pavan Holur, K. C. Enevoldsen, Shreyas Rajesh et al.

DNA sequence alignment involves assigning short DNA reads to the most probable locations on an extensive reference genome. This process is crucial for various genomic analyses, including variant calling, transcriptomics, and epigenomics. Conventional methods, refined over decades, tackle this challenge in 2 steps: genome indexing followed by efficient search to locate likely positions for given reads. Building on the success of Large Language Models in encoding text into embeddings, where the distance metric captures semantic similarity, recent efforts have explored whether the same Transformer architecture can produce embeddings for DNA sequences. Such models have shown early promise in classifying short DNA sequences, such as detecting coding/non-coding regions, and enhancer, promoter sequences. However, performance at sequence classification tasks does not translate to sequence alignment, where it is necessary to search across the genome to align each read, a significantly longer-range task. We bridge this gap by framing the Sequence Alignment task for Transformer models as an "Embed-Search-Align" task. In this framework, a novel Reference-Free DNA Embedding model generates embeddings of reads and reference fragments, which are projected into a shared vector space where the read-fragment distance is used as a surrogate for alignment. Technical contributions include: (1) Contrastive loss for self-supervised training of DNA sequence representations, facilitating rich reference-free, sequence-level embeddings, and (2) a DNA vector store to enable search across fragments on a global scale. DNA-ESA is 99% accurate when aligning 250-length reads onto a human genome (3gb), rivaling conventional methods such as Bowtie and BWA-Mem. DNA-ESA exceeds the performance of 6 Transformer model baselines such as Nucleotide Transformer, Hyena-DNA, and shows task transfer across chromosomes and species.

Lasse Hansen, Ludvig Renbo Olsen, Kenneth Enevoldsen

TextDescriptives is a Python package for calculating a large variety of metrics from text. It is built on top of spaCy and can be easily integrated into existing workflows. The package has already been used for analysing the linguistic stability of clinical texts, creating features for predicting neuropsychiatric conditions, and analysing linguistic goals of primary school students. This paper describes the package and its features.

Kenneth Enevoldsen, Lasse Hansen, Dan S. Nielsen et al.

Large language models, sometimes referred to as foundation models, have transformed multiple fields of research. However, smaller languages risk falling behind due to high training costs and small incentives for large companies to train these models. To combat this, the Danish Foundation Models project seeks to provide and maintain open, well-documented, and high-quality foundation models for the Danish language. This is achieved through broad cooperation with public and private institutions, to ensure high data quality and applicability of the trained models. We present the motivation of the project, the current status, and future perspectives.

Chenghao Xiao, Isaac Chung, Imene Kerboua et al.

Image representations are often evaluated through disjointed, task-specific protocols, leading to a fragmented understanding of model capabilities. For instance, it is unclear whether an image embedding model adept at clustering images is equally good at retrieving relevant images given a piece of text. We introduce the Massive Image Embedding Benchmark (MIEB) to evaluate the performance of image and image-text embedding models across the broadest spectrum to date. MIEB spans 38 languages across 130 individual tasks, which we group into 8 high-level categories. We benchmark 50 models across our benchmark, finding that no single method dominates across all task categories. We reveal hidden capabilities in advanced vision models such as their accurate visual representation of texts, and their yet limited capabilities in interleaved encodings and matching images and texts in the presence of confounders. We also show that the performance of vision encoders on MIEB correlates highly with their performance when used in multimodal large language models. Our code, dataset, and leaderboard are publicly available at https://github.com/embeddings-benchmark/mteb.

Isaac Chung, Imene Kerboua, Marton Kardos et al.

The Massive Text Embedding Benchmark (MTEB) has become a standard evaluation platform for text embedding models. While previous work has established the core benchmark methodology, this paper focuses on the engineering aspects that ensure MTEB's continued reproducibility and extensibility. We present our approach to maintaining robust continuous integration pipelines that validate dataset integrity, automate test execution, and assess benchmark results' generalizability. We detail the design choices that collectively enhance reproducibility and usability. Furthermore, we discuss our strategies for handling community contributions and extending the benchmark with new tasks and datasets. These engineering practices have been instrumental in scaling MTEB to become more comprehensive while maintaining quality and, ultimately, relevance to the field. Our experiences offer valuable insights for benchmark maintainers facing similar challenges in ensuring reproducibility and usability in machine learning evaluation frameworks. The MTEB repository is available at: https://github.com/embeddings-benchmark/mteb

Adnan El Assadi, Isaac Chung, Roman Solomatin et al.

Comparing human and model performance offers a valuable perspective for understanding the strengths and limitations of embedding models, highlighting where they succeed and where they fail to capture meaning and nuance. However, such comparisons are rarely made, as human performance on embedding tasks is difficult to measure. To fill this gap, we introduce HUME: Human Evaluation Framework for Text Embeddings. While frameworks like MTEB provide broad model evaluation, they lack reliable estimates of human performance, limiting the interpretability of model scores. We measure human performance across 16 MTEB datasets spanning reranking, classification, clustering, and semantic textual similarity across linguistically diverse high- and low-resource languages. Humans achieve an average performance of 77.6% compared to 80.1% for the best embedding model, although variation is substantial: models reach near-ceiling performance on some datasets while struggling on others, suggesting dataset issues and revealing shortcomings in low-resource languages. We provide human performance baselines, insight into task difficulty patterns, and an extensible evaluation framework that enables a more meaningful interpretation of the model and informs the development of both models and benchmarks. Our code, dataset, and leaderboard are publicly available at https://github.com/embeddings-benchmark/mteb.

Kenneth Enevoldsen, Márton Kardos, Niklas Muennighoff et al.

The evaluation of English text embeddings has transitioned from evaluating a handful of datasets to broad coverage across many tasks through benchmarks such as MTEB. However, this is not the case for multilingual text embeddings due to a lack of available benchmarks. To address this problem, we introduce the Scandinavian Embedding Benchmark (SEB). SEB is a comprehensive framework that enables text embedding evaluation for Scandinavian languages across 24 tasks, 10 subtasks, and 4 task categories. Building on SEB, we evaluate more than 26 models, uncovering significant performance disparities between public and commercial solutions not previously captured by MTEB. We open-source SEB and integrate it with MTEB, thus bridging the text embedding evaluation gap for Scandinavian languages.

Kenneth Enevoldsen, Isaac Chung, Imene Kerboua et al. · cambridge, meta-ai

Text embeddings are typically evaluated on a limited set of tasks, which are constrained by language, domain, and task diversity. To address these limitations and provide a more comprehensive evaluation, we introduce the Massive Multilingual Text Embedding Benchmark (MMTEB) - a large-scale, community-driven expansion of MTEB, covering over 500 quality-controlled evaluation tasks across 250+ languages. MMTEB includes a diverse set of challenging, novel tasks such as instruction following, long-document retrieval, and code retrieval, representing the largest multilingual collection of evaluation tasks for embedding models to date. Using this collection, we develop several highly multilingual benchmarks, which we use to evaluate a representative set of models. We find that while large language models (LLMs) with billions of parameters can achieve state-of-the-art performance on certain language subsets and task categories, the best-performing publicly available model is multilingual-e5-large-instruct with only 560 million parameters. To facilitate accessibility and reduce computational cost, we introduce a novel downsampling method based on inter-task correlation, ensuring a diverse selection while preserving relative model rankings. Furthermore, we optimize tasks such as retrieval by sampling hard negatives, creating smaller but effective splits. These optimizations allow us to introduce benchmarks that drastically reduce computational demands. For instance, our newly introduced zero-shot English benchmark maintains a ranking order similar to the full-scale version but at a fraction of the computational cost.

Jonathan H. Rystrøm, Kenneth C. Enevoldsen

Cultural AI benchmarks often rely on implicit assumptions about measured constructs, leading to vague formulations with poor validity and unclear interrelations. We propose exposing these assumptions using explicit cognitive models formulated as Structural Equation Models. Using cross-lingual alignment transfer as an example, we show how this approach can answer key research questions and identify missing datasets. This framework grounds benchmark construction theoretically and guides dataset development to improve construct measurement. By embracing transparency, we move towards more rigorous, cumulative AI evaluation science, challenging researchers to critically examine their assessment foundations.

Márton Kardos, Kenneth C. Enevoldsen, Kristoffer Laigaard Nielbo

Topic models are statistical tools that allow their users to gain qualitative and quantitative insights into the contents of textual corpora without the need for close reading. They can be applied in a wide range of settings from discourse analysis, through pretraining data curation, to text filtering. Topic models are typically parameter-rich, complex models, and interpreting these parameters can be challenging for their users. It is typical practice for users to interpret topics based on the top 10 highest ranking terms on a given topic. This list-of-words approach, however, gives users a limited and biased picture of the content of topics. Thoughtful user interface design and visualizations can help users gain a more complete and accurate understanding of topic models' output. While some visualization utilities do exist for topic models, these are typically limited to a certain type of topic model. We introduce topicwizard, a framework for model-agnostic topic model interpretation, that provides intuitive and interactive tools that help users examine the complex semantic relations between documents, words and topics learned by topic models.

Laurits Lyngbaek, Pascale Feldkamp, Yuri Bizzoni et al.

Sentiment Analysis is widely used to quantify sentiment in text, but its application to literary texts poses unique challenges due to figurative language, stylistic ambiguity, as well as sentiment evocation strategies. Traditional dictionary-based tools often underperform, especially for low-resource languages, and transformer models, while promising, typically output coarse categorical labels that limit fine-grained analysis. We introduce a novel continuous sentiment scoring method based on concept vector projection, trained on multilingual literary data, which more effectively captures nuanced sentiment expressions across genres, languages, and historical periods. Our approach outperforms existing tools on English and Danish texts, producing sentiment scores whose distribution closely matches human ratings, enabling more accurate analysis and sentiment arc modeling in literature.

Kenneth Enevoldsen, Kristian Nørgaard Jensen, Jan Kostkan et al.

Large-scale datasets are foundational for research and development in natural language processing. However, current approaches face three key challenges: (1) reliance on ambiguously licensed sources restricting use, sharing, and derivative works; (2) static dataset releases that prevent community contributions and diminish longevity; and (3) quality assurance processes restricted to publishing teams rather than leveraging community expertise. To address these limitations, we introduce two contributions: the Dynaword approach and Danish Dynaword. The Dynaword approach is a framework for creating large-scale, open datasets that can be continuously updated through community collaboration. Danish Dynaword is a concrete implementation that validates this approach and demonstrates its potential. Danish Dynaword contains over four times as many tokens as comparable releases, is exclusively openly licensed, and has received multiple contributions across industry and research. The repository includes light-weight tests to ensure data formatting, quality, and documentation, establishing a sustainable framework for ongoing community contributions and dataset evolution.

Dan Saattrup Nielsen, Kenneth Enevoldsen, Peter Schneider-Kamp

This paper explores the performance of encoder and decoder language models on multilingual Natural Language Understanding (NLU) tasks, with a broad focus on Germanic languages. Building upon the ScandEval benchmark, initially restricted to evaluating encoder models, we extend the evaluation framework to include decoder models. We introduce a method for evaluating decoder models on NLU tasks and apply it to the languages Danish, Swedish, Norwegian, Icelandic, Faroese, German, Dutch, and English. Through a series of experiments and analyses, we also address research questions regarding the comparative performance of encoder and decoder models, the impact of NLU task types, and the variation across language resources. Our findings reveal that encoder models can achieve significantly better NLU performance than decoder models despite having orders of magnitude fewer parameters. Additionally, we investigate the correlation between decoders and task performance via a UMAP analysis, shedding light on the unique capabilities of decoder and encoder models. This study contributes to a deeper understanding of language model paradigms in NLU tasks and provides valuable insights for model selection and evaluation in multilingual settings.

Kenneth Enevoldsen, Emil Trenckner Jessen, Rebekah Baglini

Named entity recognition is one of the cornerstones of Danish NLP, essential for language technology applications within both industry and research. However, Danish NER is inhibited by a lack of available datasets. As a consequence, no current models are capable of fine-grained named entity recognition, nor have they been evaluated for potential generalizability issues across datasets and domains. To alleviate these limitations, this paper introduces: 1) DANSK: a named entity dataset providing for high-granularity tagging as well as within-domain evaluation of models across a diverse set of domains; 2) DaCy 2.6.0 that includes three generalizable models with fine-grained annotation; and 3) an evaluation of current state-of-the-art models' ability to generalize across domains. The evaluation of existing and new models revealed notable performance discrepancies across domains, which should be addressed within the field. Shortcomings of the annotation quality of the dataset and its impact on model training and evaluation are also discussed. Despite these limitations, we advocate for the use of the new dataset DANSK alongside further work on the generalizability within Danish NER.

Kenneth Enevoldsen

Augmnety is a Python library for structured text augmentation. It is built on top of spaCy and allows for augmentation of both the text and its annotations. Augmenty provides a wide range of augmenters which can be combined in a flexible manner to create complex augmentation pipelines. It also includes a set of primitives that can be used to create custom augmenters such as word replacement augmenters. This functionality allows for augmentations within a range of applications such as named entity recognition (NER), part-of-speech tagging, and dependency parsing.

Kenneth Enevoldsen, Lasse Hansen, Kristoffer Nielbo

Danish natural language processing (NLP) has in recent years obtained considerable improvements with the addition of multiple new datasets and models. However, at present, there is no coherent framework for applying state-of-the-art models for Danish. We present DaCy: a unified framework for Danish NLP built on SpaCy. DaCy uses efficient multitask models which obtain state-of-the-art performance on named entity recognition, part-of-speech tagging, and dependency parsing. DaCy contains tools for easy integration of existing models such as for polarity, emotion, or subjectivity detection. In addition, we conduct a series of tests for biases and robustness of Danish NLP pipelines through augmentation of the test set of DaNE. DaCy large compares favorably and is especially robust to long input lengths and spelling variations and errors. All models except DaCy large display significant biases related to ethnicity while only Polyglot shows a significant gender bias. We argue that for languages with limited benchmark sets, data augmentation can be particularly useful for obtaining more realistic and fine-grained performance estimates. We provide a series of augmenters as a first step towards a more thorough evaluation of language models for low and medium resource languages and encourage further development.