Rethinking Uncertainly Missing and Ambiguous Visual Modality in Multi-Modal Entity AlignmentZhuo Chen, Lingbing Guo, Yin Fang et al.
As a crucial extension of entity alignment (EA), multi-modal entity alignment (MMEA) aims to identify identical entities across disparate knowledge graphs (KGs) by exploiting associated visual information. However, existing MMEA approaches primarily concentrate on the fusion paradigm of multi-modal entity features, while neglecting the challenges presented by the pervasive phenomenon of missing and intrinsic ambiguity of visual images. In this paper, we present a further analysis of visual modality incompleteness, benchmarking latest MMEA models on our proposed dataset MMEA-UMVM, where the types of alignment KGs covering bilingual and monolingual, with standard (non-iterative) and iterative training paradigms to evaluate the model performance. Our research indicates that, in the face of modality incompleteness, models succumb to overfitting the modality noise, and exhibit performance oscillations or declines at high rates of missing modality. This proves that the inclusion of additional multi-modal data can sometimes adversely affect EA. To address these challenges, we introduce UMAEA , a robust multi-modal entity alignment approach designed to tackle uncertainly missing and ambiguous visual modalities. It consistently achieves SOTA performance across all 97 benchmark splits, significantly surpassing existing baselines with limited parameters and time consumption, while effectively alleviating the identified limitations of other models. Our code and benchmark data are available at https://github.com/zjukg/UMAEA.
MEAformer: Multi-modal Entity Alignment Transformer for Meta Modality HybridZhuo Chen, Jiaoyan Chen, Wen Zhang et al.
Multi-modal entity alignment (MMEA) aims to discover identical entities across different knowledge graphs (KGs) whose entities are associated with relevant images. However, current MMEA algorithms rely on KG-level modality fusion strategies for multi-modal entity representation, which ignores the variations of modality preferences of different entities, thus compromising robustness against noise in modalities such as blurry images and relations. This paper introduces MEAformer, a multi-modal entity alignment transformer approach for meta modality hybrid, which dynamically predicts the mutual correlation coefficients among modalities for more fine-grained entity-level modality fusion and alignment. Experimental results demonstrate that our model not only achieves SOTA performance in multiple training scenarios, including supervised, unsupervised, iterative, and low-resource settings, but also has a limited number of parameters, efficient runtime, and interpretability. Our code is available at https://github.com/zjukg/MEAformer.
Relational Message Passing for Fully Inductive Knowledge Graph CompletionYuxia Geng, Jiaoyan Chen, Jeff Z. Pan et al.
In knowledge graph completion (KGC), predicting triples involving emerging entities and/or relations, which are unseen when the KG embeddings are learned, has become a critical challenge. Subgraph reasoning with message passing is a promising and popular solution. Some recent methods have achieved good performance, but they (i) usually can only predict triples involving unseen entities alone, failing to address more realistic fully inductive situations with both unseen entities and unseen relations, and (ii) often conduct message passing over the entities with the relation patterns not fully utilized. In this study, we propose a new method named RMPI which uses a novel Relational Message Passing network for fully Inductive KGC. It passes messages directly between relations to make full use of the relation patterns for subgraph reasoning with new techniques on graph transformation, graph pruning, relation-aware neighborhood attention, addressing empty subgraphs, etc., and can utilize the relation semantics defined in the ontological schema of KG. Extensive evaluation on multiple benchmarks has shown the effectiveness of techniques involved in RMPI and its better performance compared with the existing methods that support fully inductive KGC. RMPI is also comparable to the state-of-the-art partially inductive KGC methods with very promising results achieved. Our codes and data are available at https://github.com/zjukg/RMPI.
A Comprehensive Study on Knowledge Graph Embedding over Relational Patterns Based on Rule LearningLong Jin, Zhen Yao, Mingyang Chen et al.
Knowledge Graph Embedding (KGE) has proven to be an effective approach to solving the Knowledge Graph Completion (KGC) task. Relational patterns which refer to relations with specific semantics exhibiting graph patterns are an important factor in the performance of KGE models. Though KGE models' capabilities are analyzed over different relational patterns in theory and a rough connection between better relational patterns modeling and better performance of KGC has been built, a comprehensive quantitative analysis on KGE models over relational patterns remains absent so it is uncertain how the theoretical support of KGE to a relational pattern contributes to the performance of triples associated to such a relational pattern. To address this challenge, we evaluate the performance of 7 KGE models over 4 common relational patterns on 2 benchmarks, then conduct an analysis in theory, entity frequency, and part-to-whole three aspects and get some counterintuitive conclusions. Finally, we introduce a training-free method Score-based Patterns Adaptation (SPA) to enhance KGE models' performance over various relational patterns. This approach is simple yet effective and can be applied to KGE models without additional training. Our experimental results demonstrate that our method generally enhances performance over specific relational patterns. Our source code is available from GitHub at https://github.com/zjukg/Comprehensive-Study-over-Relational-Patterns.
Comprehensive evaluation of deep and graph learning on drug-drug interactions predictionXuan Lin, Lichang Dai, Yafang Zhou et al.
Recent advances and achievements of artificial intelligence (AI) as well as deep and graph learning models have established their usefulness in biomedical applications, especially in drug-drug interactions (DDIs). DDIs refer to a change in the effect of one drug to the presence of another drug in the human body, which plays an essential role in drug discovery and clinical research. DDIs prediction through traditional clinical trials and experiments is an expensive and time-consuming process. To correctly apply the advanced AI and deep learning, the developer and user meet various challenges such as the availability and encoding of data resources, and the design of computational methods. This review summarizes chemical structure based, network based, NLP based and hybrid methods, providing an updated and accessible guide to the broad researchers and development community with different domain knowledge. We introduce widely-used molecular representation and describe the theoretical frameworks of graph neural network models for representing molecular structures. We present the advantages and disadvantages of deep and graph learning methods by performing comparative experiments. We discuss the potential technical challenges and highlight future directions of deep and graph learning models for accelerating DDIs prediction.
ZeroDDI: A Zero-Shot Drug-Drug Interaction Event Prediction Method with Semantic Enhanced Learning and Dual-Modal Uniform AlignmentZiyan Wang, Zhankun Xiong, Feng Huang et al.
Drug-drug interactions (DDIs) can result in various pharmacological changes, which can be categorized into different classes known as DDI events (DDIEs). In recent years, previously unobserved/unseen DDIEs have been emerging, posing a new classification task when unseen classes have no labelled instances in the training stage, which is formulated as a zero-shot DDIE prediction (ZS-DDIE) task. However, existing computational methods are not directly applicable to ZS-DDIE, which has two primary challenges: obtaining suitable DDIE representations and handling the class imbalance issue. To overcome these challenges, we propose a novel method named ZeroDDI for the ZS-DDIE task. Specifically, we design a biological semantic enhanced DDIE representation learning module, which emphasizes the key biological semantics and distills discriminative molecular substructure-related semantics for DDIE representation learning. Furthermore, we propose a dual-modal uniform alignment strategy to distribute drug pair representations and DDIE semantic representations uniformly in a unit sphere and align the matched ones, which can mitigate the issue of class imbalance. Extensive experiments showed that ZeroDDI surpasses the baselines and indicate that it is a promising tool for detecting unseen DDIEs. Our code has been released in https://github.com/wzy-Sarah/ZeroDDI.
Tele-Knowledge Pre-training for Fault AnalysisZhuo Chen, Wen Zhang, Yufeng Huang et al.
In this work, we share our experience on tele-knowledge pre-training for fault analysis, a crucial task in telecommunication applications that requires a wide range of knowledge normally found in both machine log data and product documents. To organize this knowledge from experts uniformly, we propose to create a Tele-KG (tele-knowledge graph). Using this valuable data, we further propose a tele-domain language pre-training model TeleBERT and its knowledge-enhanced version, a tele-knowledge re-training model KTeleBERT. which includes effective prompt hints, adaptive numerical data encoding, and two knowledge injection paradigms. Concretely, our proposal includes two stages: first, pre-training TeleBERT on 20 million tele-related corpora, and then re-training it on 1 million causal and machine-related corpora to obtain KTeleBERT. Our evaluation on multiple tasks related to fault analysis in tele-applications, including root-cause analysis, event association prediction, and fault chain tracing, shows that pre-training a language model with tele-domain data is beneficial for downstream tasks. Moreover, the KTeleBERT re-training further improves the performance of task models, highlighting the effectiveness of incorporating diverse tele-knowledge into the model.
MACO: A Modality Adversarial and Contrastive Framework for Modality-missing Multi-modal Knowledge Graph CompletionYichi Zhang, Zhuo Chen, Wen Zhang
Recent years have seen significant advancements in multi-modal knowledge graph completion (MMKGC). MMKGC enhances knowledge graph completion (KGC) by integrating multi-modal entity information, thereby facilitating the discovery of unobserved triples in the large-scale knowledge graphs (KGs). Nevertheless, existing methods emphasize the design of elegant KGC models to facilitate modality interaction, neglecting the real-life problem of missing modalities in KGs. The missing modality information impedes modal interaction, consequently undermining the model's performance. In this paper, we propose a modality adversarial and contrastive framework (MACO) to solve the modality-missing problem in MMKGC. MACO trains a generator and discriminator adversarially to generate missing modality features that can be incorporated into the MMKGC model. Meanwhile, we design a cross-modal contrastive loss to improve the performance of the generator. Experiments on public benchmarks with further explorations demonstrate that MACO could achieve state-of-the-art results and serve as a versatile framework to bolster various MMKGC models. Our code and benchmark data are available at https://github.com/zjukg/MACO.
LaKo: Knowledge-driven Visual Question Answering via Late Knowledge-to-Text InjectionZhuo Chen, Yufeng Huang, Jiaoyan Chen et al.
Visual question answering (VQA) often requires an understanding of visual concepts and language semantics, which relies on external knowledge. Most existing methods exploit pre-trained language models or/and unstructured text, but the knowledge in these resources are often incomplete and noisy. Some other methods prefer to use knowledge graphs (KGs) which often have intensive structured knowledge, but the research is still quite preliminary. In this paper, we propose LaKo, a knowledge-driven VQA method via Late Knowledge-to-text Injection. To effectively incorporate an external KG, we transfer triples into textual format and propose a late injection mechanism for knowledge fusion. Finally we address VQA as a text generation task with an effective encoder-decoder paradigm, which achieves state-of-the-art results on OKVQA dataset.
Analogical Inference Enhanced Knowledge Graph EmbeddingZhen Yao, Wen Zhang, Mingyang Chen et al.
Knowledge graph embedding (KGE), which maps entities and relations in a knowledge graph into continuous vector spaces, has achieved great success in predicting missing links in knowledge graphs. However, knowledge graphs often contain incomplete triples that are difficult to inductively infer by KGEs. To address this challenge, we resort to analogical inference and propose a novel and general self-supervised framework AnKGE to enhance KGE models with analogical inference capability. We propose an analogical object retriever that retrieves appropriate analogical objects from entity-level, relation-level, and triple-level. And in AnKGE, we train an analogy function for each level of analogical inference with the original element embedding from a well-trained KGE model as input, which outputs the analogical object embedding. In order to combine inductive inference capability from the original KGE model and analogical inference capability enhanced by AnKGE, we interpolate the analogy score with the base model score and introduce the adaptive weights in the score function for prediction. Through extensive experiments on FB15k-237 and WN18RR datasets, we show that AnKGE achieves competitive results on link prediction task and well performs analogical inference.
CausE: Towards Causal Knowledge Graph EmbeddingYichi Zhang, Wen Zhang
Knowledge graph embedding (KGE) focuses on representing the entities and relations of a knowledge graph (KG) into the continuous vector spaces, which can be employed to predict the missing triples to achieve knowledge graph completion (KGC). However, KGE models often only briefly learn structural correlations of triple data and embeddings would be misled by the trivial patterns and noisy links in real-world KGs. To address this issue, we build the new paradigm of KGE in the context of causality and embedding disentanglement. We further propose a Causality-enhanced knowledge graph Embedding (CausE) framework. CausE employs causal intervention to estimate the causal effect of the confounder embeddings and design new training objectives to make stable predictions. Experimental results demonstrate that CausE could outperform the baseline models and achieve state-of-the-art KGC performance. We release our code in https://github.com/zjukg/CausE.
19.9AISep 19, 2022
Neural-Symbolic Entangled Framework for Complex Query AnsweringZezhong Xu, Wen Zhang, Peng Ye et al.
Answering complex queries over knowledge graphs (KG) is an important yet challenging task because of the KG incompleteness issue and cascading errors during reasoning. Recent query embedding (QE) approaches to embed the entities and relations in a KG and the first-order logic (FOL) queries into a low dimensional space, answering queries by dense similarity search. However, previous works mainly concentrate on the target answers, ignoring intermediate entities' usefulness, which is essential for relieving the cascading error problem in logical query answering. In addition, these methods are usually designed with their own geometric or distributional embeddings to handle logical operators like union, intersection, and negation, with the sacrifice of the accuracy of the basic operator - projection, and they could not absorb other embedding methods to their models. In this work, we propose a Neural and Symbolic Entangled framework (ENeSy) for complex query answering, which enables the neural and symbolic reasoning to enhance each other to alleviate the cascading error and KG incompleteness. The projection operator in ENeSy could be any embedding method with the capability of link prediction, and the other FOL operators are handled without parameters. With both neural and symbolic reasoning results contained, ENeSy answers queries in ensembles. ENeSy achieves the SOTA performance on several benchmarks, especially in the setting of the training model only with the link prediction task.
NeuralKG-ind: A Python Library for Inductive Knowledge Graph Representation LearningWen Zhang, Zhen Yao, Mingyang Chen et al.
Since the dynamic characteristics of knowledge graphs, many inductive knowledge graph representation learning (KGRL) works have been proposed in recent years, focusing on enabling prediction over new entities. NeuralKG-ind is the first library of inductive KGRL as an important update of NeuralKG library. It includes standardized processes, rich existing methods, decoupled modules, and comprehensive evaluation metrics. With NeuralKG-ind, it is easy for researchers and engineers to reproduce, redevelop, and compare inductive KGRL methods. The library, experimental methodologies, and model re-implementing results of NeuralKG-ind are all publicly released at https://github.com/zjukg/NeuralKG/tree/ind .
6.1CLFeb 3, 2023
Generalizing to Unseen Elements: A Survey on Knowledge Extrapolation for Knowledge GraphsMingyang Chen, Wen Zhang, Yuxia Geng et al.
Knowledge graphs (KGs) have become valuable knowledge resources in various applications, and knowledge graph embedding (KGE) methods have garnered increasing attention in recent years. However, conventional KGE methods still face challenges when it comes to handling unseen entities or relations during model testing. To address this issue, much effort has been devoted to various fields of KGs. In this paper, we use a set of general terminologies to unify these methods and refer to them collectively as Knowledge Extrapolation. We comprehensively summarize these methods, classified by our proposed taxonomy, and describe their interrelationships. Additionally, we introduce benchmarks and provide comparisons of these methods based on aspects that are not captured by the taxonomy. Finally, we suggest potential directions for future research.
Entity-Agnostic Representation Learning for Parameter-Efficient Knowledge Graph EmbeddingMingyang Chen, Wen Zhang, Zhen Yao et al.
We propose an entity-agnostic representation learning method for handling the problem of inefficient parameter storage costs brought by embedding knowledge graphs. Conventional knowledge graph embedding methods map elements in a knowledge graph, including entities and relations, into continuous vector spaces by assigning them one or multiple specific embeddings (i.e., vector representations). Thus the number of embedding parameters increases linearly as the growth of knowledge graphs. In our proposed model, Entity-Agnostic Representation Learning (EARL), we only learn the embeddings for a small set of entities and refer to them as reserved entities. To obtain the embeddings for the full set of entities, we encode their distinguishable information from their connected relations, k-nearest reserved entities, and multi-hop neighbors. We learn universal and entity-agnostic encoders for transforming distinguishable information into entity embeddings. This approach allows our proposed EARL to have a static, efficient, and lower parameter count than conventional knowledge graph embedding methods. Experimental results show that EARL uses fewer parameters and performs better on link prediction tasks than baselines, reflecting its parameter efficiency.
Meta-Learning Based Knowledge Extrapolation for Knowledge Graphs in the Federated SettingMingyang Chen, Wen Zhang, Zhen Yao et al.
We study the knowledge extrapolation problem to embed new components (i.e., entities and relations) that come with emerging knowledge graphs (KGs) in the federated setting. In this problem, a model trained on an existing KG needs to embed an emerging KG with unseen entities and relations. To solve this problem, we introduce the meta-learning setting, where a set of tasks are sampled on the existing KG to mimic the link prediction task on the emerging KG. Based on sampled tasks, we meta-train a graph neural network framework that can construct features for unseen components based on structural information and output embeddings for them. Experimental results show that our proposed method can effectively embed unseen components and outperforms models that consider inductive settings for KGs and baselines that directly use conventional KG embedding methods.
Hierarchical Graph Representation Learning for the Prediction of Drug-Target Binding AffinityZhaoyang Chu, Shichao Liu, Wen Zhang
The identification of drug-target binding affinity (DTA) has attracted increasing attention in the drug discovery process due to the more specific interpretation than binary interaction prediction. Recently, numerous deep learning-based computational methods have been proposed to predict the binding affinities between drugs and targets benefiting from their satisfactory performance. However, the previous works mainly focus on encoding biological features and chemical structures of drugs and targets, with a lack of exploiting the essential topological information from the drug-target affinity network. In this paper, we propose a novel hierarchical graph representation learning model for the drug-target binding affinity prediction, namely HGRL-DTA. The main contribution of our model is to establish a hierarchical graph learning architecture to incorporate the intrinsic properties of drug/target molecules and the topological affinities of drug-target pairs. In this architecture, we adopt a message broadcasting mechanism to integrate the hierarchical representations learned from the global-level affinity graph and the local-level molecular graph. Besides, we design a similarity-based embedding map to solve the cold start problem of inferring representations for unseen drugs and targets. Comprehensive experimental results under different scenarios indicate that HGRL-DTA significantly outperforms the state-of-the-art models and shows better model generalization among all the scenarios.
15.4AISep 15, 2022
Knowledge Graph Completion with Pre-trained Multimodal Transformer and Twins Negative SamplingYichi Zhang, Wen Zhang
Knowledge graphs (KGs) that modelings the world knowledge as structural triples are inevitably incomplete. Such problems still exist for multimodal knowledge graphs (MMKGs). Thus, knowledge graph completion (KGC) is of great importance to predict the missing triples in the existing KGs. As for the existing KGC methods, embedding-based methods rely on manual design to leverage multimodal information while finetune-based approaches are not superior to embedding-based methods in link prediction. To address these problems, we propose a VisualBERT-enhanced Knowledge Graph Completion model (VBKGC for short). VBKGC could capture deeply fused multimodal information for entities and integrate them into the KGC model. Besides, we achieve the co-design of the KGC model and negative sampling by designing a new negative sampling strategy called twins negative sampling. Twins negative sampling is suitable for multimodal scenarios and could align different embeddings for entities. We conduct extensive experiments to show the outstanding performance of VBKGC on the link prediction task and make further exploration of VBKGC.
Modality-Aware Negative Sampling for Multi-modal Knowledge Graph EmbeddingYichi Zhang, Mingyang Chen, Wen Zhang
Negative sampling (NS) is widely used in knowledge graph embedding (KGE), which aims to generate negative triples to make a positive-negative contrast during training. However, existing NS methods are unsuitable when multi-modal information is considered in KGE models. They are also inefficient due to their complex design. In this paper, we propose Modality-Aware Negative Sampling (MANS) for multi-modal knowledge graph embedding (MMKGE) to address the mentioned problems. MANS could align structural and visual embeddings for entities in KGs and learn meaningful embeddings to perform better in multi-modal KGE while keeping lightweight and efficient. Empirical results on two benchmarks demonstrate that MANS outperforms existing NS methods. Meanwhile, we make further explorations about MANS to confirm its effectiveness.
2.5AIMar 2, 2022
PKGM: A Pre-trained Knowledge Graph Model for E-commerce ApplicationWen Zhang, Chi-Man Wong, Ganqinag Ye et al.
In recent years, knowledge graphs have been widely applied as a uniform way to organize data and have enhanced many tasks requiring knowledge. In online shopping platform Taobao, we built a billion-scale e-commerce product knowledge graph. It organizes data uniformly and provides item knowledge services for various tasks such as item recommendation. Usually, such knowledge services are provided through triple data, while this implementation includes (1) tedious data selection works on product knowledge graph and (2) task model designing works to infuse those triples knowledge. More importantly, product knowledge graph is far from complete, resulting error propagation to knowledge enhanced tasks. To avoid these problems, we propose a Pre-trained Knowledge Graph Model (PKGM) for the billion-scale product knowledge graph. On the one hand, it could provide item knowledge services in a uniform way with service vectors for embedding-based and item-knowledge-related task models without accessing triple data. On the other hand, it's service is provided based on implicitly completed product knowledge graph, overcoming the common the incomplete issue. We also propose two general ways to integrate the service vectors from PKGM into downstream task models. We test PKGM in five knowledge-related tasks, item classification, item resolution, item recommendation, scene detection and sequential recommendation. Experimental results show that PKGM introduces significant performance gains on these tasks, illustrating the useful of service vectors from PKGM.
Negative Sampling with Adaptive Denoising Mixup for Knowledge Graph EmbeddingXiangnan Chen, Wen Zhang, Zhen Yao et al.
Knowledge graph embedding (KGE) aims to map entities and relations of a knowledge graph (KG) into a low-dimensional and dense vector space via contrasting the positive and negative triples. In the training process of KGEs, negative sampling is essential to find high-quality negative triples since KGs only contain positive triples. Most existing negative sampling methods assume that non-existent triples with high scores are high-quality negative triples. However, negative triples sampled by these methods are likely to contain noise. Specifically, they ignore that non-existent triples with high scores might also be true facts due to the incompleteness of KGs, which are usually called false negative triples. To alleviate the above issue, we propose an easily pluggable denoising mixup method called DeMix, which generates high-quality triples by refining sampled negative triples in a self-supervised manner. Given a sampled unlabeled triple, DeMix firstly classifies it into a marginal pseudo-negative triple or a negative triple based on the judgment of the KGE model itself. Secondly, it selects an appropriate mixup partner for the current triple to synthesize a partially positive or a harder negative triple. Experimental results on the knowledge graph completion task show that the proposed DeMix is superior to other negative sampling techniques, ensuring corresponding KGEs a faster convergence and better link prediction results.
4.2AIJul 3, 2024
Croppable Knowledge Graph EmbeddingYushan Zhu, Wen Zhang, Zhiqiang Liu et al.
Knowledge Graph Embedding (KGE) is a common approach for Knowledge Graphs (KGs) in AI tasks. Embedding dimensions depend on application scenarios. Requiring a new dimension means training a new KGE model from scratch, increasing cost and limiting efficiency and flexibility. In this work, we propose a novel KGE training framework MED. It allows one training to obtain a croppable KGE model for multiple scenarios with different dimensional needs. Sub-models of required dimensions can be directly cropped and used without extra training. In MED, we propose a mutual learning mechanism to improve the low-dimensional sub-models and make high-dimensional sub-models retain the low-dimensional sub-models' capacity, an evolutionary improvement mechanism to promote the high-dimensional sub-models to master the triple that the low-dimensional sub-models can not, and a dynamic loss weight to adaptively balance the multiple losses. Experiments on 4 KGE models across 4 standard KG completion datasets, 3 real-world scenarios using a large-scale KG, and extending MED to the BERT language model demonstrate its effectiveness, high efficiency, and flexible extensibility.
Tokenization, Fusion, and Augmentation: Towards Fine-grained Multi-modal Entity RepresentationYichi Zhang, Zhuo Chen, Lingbing Guo et al.
Multi-modal knowledge graph completion (MMKGC) aims to discover unobserved knowledge from given knowledge graphs, collaboratively leveraging structural information from the triples and multi-modal information of the entities to overcome the inherent incompleteness. Existing MMKGC methods usually extract multi-modal features with pre-trained models, resulting in coarse handling of multi-modal entity information, overlooking the nuanced, fine-grained semantic details and their complex interactions. To tackle this shortfall, we introduce a novel framework MyGO to tokenize, fuse, and augment the fine-grained multi-modal representations of entities and enhance the MMKGC performance. Motivated by the tokenization technology, MyGO tokenizes multi-modal entity information as fine-grained discrete tokens and learns entity representations with a cross-modal entity encoder. To further augment the multi-modal representations, MyGO incorporates fine-grained contrastive learning to highlight the specificity of the entity representations. Experiments on standard MMKGC benchmarks reveal that our method surpasses 19 of the latest models, underlining its superior performance. Code and data can be found in https://github.com/zjukg/MyGO
2.7CLNov 11, 2025
Self-Correction Distillation for Structured Data Question AnsweringYushan Zhu, Wen Zhang, Long Jin et al.
Structured data question answering (QA), including table QA, Knowledge Graph (KG) QA, and temporal KG QA, is a pivotal research area. Advances in large language models (LLMs) have driven significant progress in unified structural QA frameworks like TrustUQA. However, these frameworks face challenges when applied to small-scale LLMs since small-scale LLMs are prone to errors in generating structured queries. To improve the structured data QA ability of small-scale LLMs, we propose a self-correction distillation (SCD) method. In SCD, an error prompt mechanism (EPM) is designed to detect errors and provide customized error messages during inference, and a two-stage distillation strategy is designed to transfer large-scale LLMs' query-generation and error-correction capabilities to small-scale LLM. Experiments across 5 benchmarks with 3 structured data types demonstrate that our SCD achieves the best performance and superior generalization on small-scale LLM (8B) compared to other distillation methods, and closely approaches the performance of GPT4 on some datasets. Furthermore, large-scale LLMs equipped with EPM surpass the state-of-the-art results on most datasets.
Know Your Needs Better: Towards Structured Understanding of Marketer Demands with Analogical Reasoning Augmented LLMsJunjie Wang, Dan Yang, Binbin Hu et al.
In this paper, we explore a new way for user targeting, where non-expert marketers could select their target users solely given demands in natural language form. The key to this issue is how to transform natural languages into practical structured logical languages, i.e., the structured understanding of marketer demands. In practical scenarios, the demands of non-expert marketers are often abstract and diverse. Considering the impressive natural language processing ability of large language models (LLMs), we try to leverage LLMs to solve this issue. To stimulate the LLMs' reasoning ability, the chain-of-thought (CoT) prompting method is widely used, but existing methods still have some limitations in our scenario: (1) Previous methods either use simple "Let's think step by step" spells or provide fixed examples in demonstrations without considering compatibility between prompts and concrete questions, making LLMs ineffective when the marketers' demands are abstract and diverse. (2) Previous methods are often implemented in closed-source models or excessively large models, which is not suitable in industrial practical scenarios. Based on these, we propose ARALLM (i.e., Analogical Reasoning Augmented Large Language Models) consisting of two modules: Analogical Reasoning based Prompting and Reasoning-Augmented Multi-Task Model Distillation. Part of our data and code can be found at https://github.com/alipay/Analogic-Reasoning-Augmented-Large-Language-Model.
6.1CLMay 21, 2024Code
Multi-domain Knowledge Graph Collaborative Pre-training and Prompt Tuning for Diverse Downstream TasksYichi Zhang, Binbin Hu, Zhuo Chen et al.
Knowledge graphs (KGs) provide reliable external knowledge for a wide variety of AI tasks in the form of structured triples. Knowledge graph pre-training (KGP) aims to pre-train neural networks on large-scale KGs and provide unified interfaces to enhance different downstream tasks, which is a key direction for KG management, maintenance, and applications. Existing works often focus on purely research questions in open domains, or they are not open source due to data security and privacy in real scenarios. Meanwhile, existing studies have not explored the training efficiency and transferability of KGP models in depth. To address these problems, We propose a framework MuDoK to achieve multi-domain collaborative pre-training and efficient prefix prompt tuning to serve diverse downstream tasks like recommendation and text understanding. Our design is a plug-and-play prompt learning approach that can be flexibly adapted to different downstream task backbones. In response to the lack of open-source benchmarks, we constructed a new multi-domain KGP benchmark called KPI with two large-scale KGs and six different sub-domain tasks to evaluate our method and open-sourced it for subsequent research. We evaluated our approach based on constructed KPI benchmarks using diverse backbone models in heterogeneous downstream tasks. The experimental results show that our framework brings significant performance gains, along with its generality, efficiency, and transferability.
Noise-powered Multi-modal Knowledge Graph Representation FrameworkZhuo Chen, Yin Fang, Yichi Zhang et al.
The rise of Multi-modal Pre-training highlights the necessity for a unified Multi-Modal Knowledge Graph (MMKG) representation learning framework. Such a framework is essential for embedding structured knowledge into multi-modal Large Language Models effectively, alleviating issues like knowledge misconceptions and multi-modal hallucinations. In this work, we explore the efficacy of models in accurately embedding entities within MMKGs through two pivotal tasks: Multi-modal Knowledge Graph Completion (MKGC) and Multi-modal Entity Alignment (MMEA). Building on this foundation, we propose a novel SNAG method that utilizes a Transformer-based architecture equipped with modality-level noise masking to robustly integrate multi-modal entity features in KGs. By incorporating specific training objectives for both MKGC and MMEA, our approach achieves SOTA performance across a total of ten datasets, demonstrating its versatility. Moreover, SNAG can not only function as a standalone model but also enhance other existing methods, providing stable performance improvements. Code and data are available at https://github.com/zjukg/SNAG.
SKA-Bench: A Fine-Grained Benchmark for Evaluating Structured Knowledge Understanding of LLMsZhiqiang Liu, Enpei Niu, Yin Hua et al.
Although large language models (LLMs) have made significant progress in understanding Structured Knowledge (SK) like KG and Table, existing evaluations for SK understanding are non-rigorous (i.e., lacking evaluations of specific capabilities) and focus on a single type of SK. Therefore, we aim to propose a more comprehensive and rigorous structured knowledge understanding benchmark to diagnose the shortcomings of LLMs. In this paper, we introduce SKA-Bench, a Structured Knowledge Augmented QA Benchmark that encompasses four widely used structured knowledge forms: KG, Table, KG+Text, and Table+Text. We utilize a three-stage pipeline to construct SKA-Bench instances, which includes a question, an answer, positive knowledge units, and noisy knowledge units. To evaluate the SK understanding capabilities of LLMs in a fine-grained manner, we expand the instances into four fundamental ability testbeds: Noise Robustness, Order Insensitivity, Information Integration, and Negative Rejection. Empirical evaluations on 8 representative LLMs, including the advanced DeepSeek-R1, indicate that existing LLMs still face significant challenges in understanding structured knowledge, and their performance is influenced by factors such as the amount of noise, the order of knowledge units, and hallucination phenomenon. Our dataset and code are available at https://github.com/zjukg/SKA-Bench.
A Heterogeneous Network-based Contrastive Learning Approach for Predicting Drug-Target InteractionJunwei Hu, Michael Bewong, Selasi Kwashie et al.
Drug-target interaction (DTI) prediction is crucial for drug development and repositioning. Methods using heterogeneous graph neural networks (HGNNs) for DTI prediction have become a promising approach, with attention-based models often achieving excellent performance. However, these methods typically overlook edge features when dealing with heterogeneous biomedical networks. We propose a heterogeneous network-based contrastive learning method called HNCL-DTI, which designs a heterogeneous graph attention network to predict potential/novel DTIs. Specifically, our HNCL-DTI utilizes contrastive learning to collaboratively learn node representations from the perspective of both node-based and edge-based attention within the heterogeneous structure of biomedical networks. Experimental results show that HNCL-DTI outperforms existing advanced baseline methods on benchmark datasets, demonstrating strong predictive ability and practical effectiveness. The data and source code are available at https://github.com/Zaiwen/HNCL-DTI.
Structure-CLIP: Towards Scene Graph Knowledge to Enhance Multi-modal Structured RepresentationsYufeng Huang, Jiji Tang, Zhuo Chen et al.
Large-scale vision-language pre-training has achieved significant performance in multi-modal understanding and generation tasks. However, existing methods often perform poorly on image-text matching tasks that require structured representations, i.e., representations of objects, attributes, and relations. As illustrated in Fig.~reffig:case (a), the models cannot make a distinction between ``An astronaut rides a horse" and ``A horse rides an astronaut". This is because they fail to fully leverage structured knowledge when learning representations in multi-modal scenarios. In this paper, we present an end-to-end framework Structure-CLIP, which integrates Scene Graph Knowledge (SGK) to enhance multi-modal structured representations. Firstly, we use scene graphs to guide the construction of semantic negative examples, which results in an increased emphasis on learning structured representations. Moreover, a Knowledge-Enhance Encoder (KEE) is proposed to leverage SGK as input to further enhance structured representations. To verify the effectiveness of the proposed framework, we pre-train our model with the aforementioned approaches and conduct experiments on downstream tasks. Experimental results demonstrate that Structure-CLIP achieves state-of-the-art (SOTA) performance on VG-Attribution and VG-Relation datasets, with 12.5% and 4.1% ahead of the multi-modal SOTA model respectively. Meanwhile, the results on MSCOCO indicate that Structure-CLIP significantly enhances the structured representations while maintaining the ability of general representations. Our code is available at https://github.com/zjukg/Structure-CLIP.
NeuralKG: An Open Source Library for Diverse Representation Learning of Knowledge GraphsWen Zhang, Xiangnan Chen, Zhen Yao et al.
NeuralKG is an open-source Python-based library for diverse representation learning of knowledge graphs. It implements three different series of Knowledge Graph Embedding (KGE) methods, including conventional KGEs, GNN-based KGEs, and Rule-based KGEs. With a unified framework, NeuralKG successfully reproduces link prediction results of these methods on benchmarks, freeing users from the laborious task of reimplementing them, especially for some methods originally written in non-python programming languages. Besides, NeuralKG is highly configurable and extensible. It provides various decoupled modules that can be mixed and adapted to each other. Thus with NeuralKG, developers and researchers can quickly implement their own designed models and obtain the optimal training methods to achieve the best performance efficiently. We built an website in http://neuralkg.zjukg.cn to organize an open and shared KG representation learning community. The source code is all publicly released at https://github.com/zjukg/NeuralKG.
DeepKE: A Deep Learning Based Knowledge Extraction Toolkit for Knowledge Base PopulationNingyu Zhang, Xin Xu, Liankuan Tao et al.
We present an open-source and extensible knowledge extraction toolkit DeepKE, supporting complicated low-resource, document-level and multimodal scenarios in the knowledge base population. DeepKE implements various information extraction tasks, including named entity recognition, relation extraction and attribute extraction. With a unified framework, DeepKE allows developers and researchers to customize datasets and models to extract information from unstructured data according to their requirements. Specifically, DeepKE not only provides various functional modules and model implementation for different tasks and scenarios but also organizes all components by consistent frameworks to maintain sufficient modularity and extensibility. We release the source code at GitHub in https://github.com/zjunlp/DeepKE with Google Colab tutorials and comprehensive documents for beginners. Besides, we present an online system in http://deepke.openkg.cn/EN/re_doc_show.html for real-time extraction of various tasks, and a demo video.
Molecular Contrastive Learning with Chemical Element Knowledge GraphYin Fang, Qiang Zhang, Haihong Yang et al.
Molecular representation learning contributes to multiple downstream tasks such as molecular property prediction and drug design. To properly represent molecules, graph contrastive learning is a promising paradigm as it utilizes self-supervision signals and has no requirements for human annotations. However, prior works fail to incorporate fundamental domain knowledge into graph semantics and thus ignore the correlations between atoms that have common attributes but are not directly connected by bonds. To address these issues, we construct a Chemical Element Knowledge Graph (KG) to summarize microscopic associations between elements and propose a novel Knowledge-enhanced Contrastive Learning (KCL) framework for molecular representation learning. KCL framework consists of three modules. The first module, knowledge-guided graph augmentation, augments the original molecular graph based on the Chemical Element KG. The second module, knowledge-aware graph representation, extracts molecular representations with a common graph encoder for the original molecular graph and a Knowledge-aware Message Passing Neural Network (KMPNN) to encode complex information in the augmented molecular graph. The final module is a contrastive objective, where we maximize agreement between these two views of molecular graphs. Extensive experiments demonstrated that KCL obtained superior performances against state-of-the-art baselines on eight molecular datasets. Visualization experiments properly interpret what KCL has learned from atoms and attributes in the augmented molecular graphs. Our codes and data are available at https://github.com/ZJU-Fangyin/KCL.
ItLnc-BXE: a Bagging-XGBoost-ensemble method with multiple features for identification of plant lncRNAsGuangyan Zhang, Ziru Liu, Jichen Dai et al.
Motivation: Since long non-coding RNAs (lncRNAs) have involved in a wide range of functions in cellular and developmental processes, an increasing number of methods have been proposed for distinguishing lncRNAs from coding RNAs. However, most of the existing methods are designed for lncRNAs in animal systems, and only a few methods focus on the plant lncRNA identification. Different from lncRNAs in animal systems, plant lncRNAs have distinct characteristics. It is desirable to develop a computational method for accurate and robust identification of plant lncRNAs. Results: Herein, we present a plant lncRNA identification method ItLnc-BXE, which utilizes multiple features and the ensemble learning strategy. First, a diversity of lncRNA features is collected and filtered by feature selection to represent RNA transcripts. Then, several base learners are trained and further combined into a single meta-learner by ensemble learning, and thus an ItLnc-BXE model is constructed. ItLnc-BXE models are evaluated on datasets of six plant species, the results show that ItLnc-BXE outperforms other state-of-the-art plant lncRNA identification methods, achieving better and robust performances (AUC>95.91%). We also perform some experiments about cross-species lncRNA identification, and the results indicate that dicots-based and monocots-based models can be used to accurately identify lncRNAs in lower plant species, such as mosses and algae. Availability: source codes are available at https://github.com/BioMedicalBigDataMiningLab/ItLnc-BXE. Contact: zhangwen@mail.hzau.edu.cn (or) zhangwen@whu.edu.cn Supplementary information: Supplementary data are available at Bioinformatics online.
Knowledge Graphs Meet Multi-Modal Learning: A Comprehensive SurveyZhuo Chen, Yichi Zhang, Yin Fang et al.
Knowledge Graphs (KGs) play a pivotal role in advancing various AI applications, with the semantic web community's exploration into multi-modal dimensions unlocking new avenues for innovation. In this survey, we carefully review over 300 articles, focusing on KG-aware research in two principal aspects: KG-driven Multi-Modal (KG4MM) learning, where KGs support multi-modal tasks, and Multi-Modal Knowledge Graph (MM4KG), which extends KG studies into the MMKG realm. We begin by defining KGs and MMKGs, then explore their construction progress. Our review includes two primary task categories: KG-aware multi-modal learning tasks, such as Image Classification and Visual Question Answering, and intrinsic MMKG tasks like Multi-modal Knowledge Graph Completion and Entity Alignment, highlighting specific research trajectories. For most of these tasks, we provide definitions, evaluation benchmarks, and additionally outline essential insights for conducting relevant research. Finally, we discuss current challenges and identify emerging trends, such as progress in Large Language Modeling and Multi-modal Pre-training strategies. This survey aims to serve as a comprehensive reference for researchers already involved in or considering delving into KG and multi-modal learning research, offering insights into the evolving landscape of MMKG research and supporting future work.
A Multi-Modal Contrastive Diffusion Model for Therapeutic Peptide GenerationYongkang Wang, Xuan Liu, Feng Huang et al.
Therapeutic peptides represent a unique class of pharmaceutical agents crucial for the treatment of human diseases. Recently, deep generative models have exhibited remarkable potential for generating therapeutic peptides, but they only utilize sequence or structure information alone, which hinders the performance in generation. In this study, we propose a Multi-Modal Contrastive Diffusion model (MMCD), fusing both sequence and structure modalities in a diffusion framework to co-generate novel peptide sequences and structures. Specifically, MMCD constructs the sequence-modal and structure-modal diffusion models, respectively, and devises a multi-modal contrastive learning strategy with intercontrastive and intra-contrastive in each diffusion timestep, aiming to capture the consistency between two modalities and boost model performance. The inter-contrastive aligns sequences and structures of peptides by maximizing the agreement of their embeddings, while the intra-contrastive differentiates therapeutic and non-therapeutic peptides by maximizing the disagreement of their sequence/structure embeddings simultaneously. The extensive experiments demonstrate that MMCD performs better than other state-of-theart deep generative methods in generating therapeutic peptides across various metrics, including antimicrobial/anticancer score, diversity, and peptide-docking.
Human Decision-making is Susceptible to AI-driven ManipulationSahand Sabour, June M. Liu, Siyang Liu et al.
Artificial Intelligence (AI) systems are increasingly intertwined with daily life, assisting users in executing various tasks and providing guidance on decision-making. This integration introduces risks of AI-driven manipulation, where such systems may exploit users' cognitive biases and emotional vulnerabilities to steer them toward harmful outcomes. Through a randomized controlled trial with 233 participants, we examined human susceptibility to such manipulation in financial (e.g., purchases) and emotional (e.g., conflict resolution) decision-making contexts. Participants interacted with one of three AI agents: a neutral agent (NA) optimizing for user benefit without explicit influence, a manipulative agent (MA) designed to covertly influence beliefs and behaviors, or a strategy-enhanced manipulative agent (SEMA) employing explicit psychological tactics to reach its hidden objectives. By analyzing participants' decision patterns and shifts in their preference ratings post-interaction, we found significant susceptibility to AI-driven manipulation. Particularly, across both decision-making domains, participants interacting with the manipulative agents shifted toward harmful options at substantially higher rates (financial, MA: 62.3%, SEMA: 59.6%; emotional, MA: 42.3%, SEMA: 41.5%) compared to the NA group (financial, 35.8%; emotional, 12.8%). Notably, our findings reveal that even subtle manipulative objectives (MA) can be as effective as employing explicit psychological strategies (SEMA) in swaying human decision-making. By revealing the potential for covert AI influence, this study highlights a critical vulnerability in human-AI interactions, emphasizing the need for ethical safeguards and regulatory frameworks to ensure responsible deployment of AI technologies and protect human autonomy.
3.3QMJan 4, 2024
Improving PTM Site Prediction by Coupling of Multi-Granularity Structure and Multi-Scale Sequence RepresentationZhengyi Li, Menglu Li, Lida Zhu et al.
Protein post-translational modification (PTM) site prediction is a fundamental task in bioinformatics. Several computational methods have been developed to predict PTM sites. However, existing methods ignore the structure information and merely utilize protein sequences. Furthermore, designing a more fine-grained structure representation learning method is urgently needed as PTM is a biological event that occurs at the atom granularity. In this paper, we propose a PTM site prediction method by Coupling of Multi-Granularity structure and Multi-Scale sequence representation, PTM-CMGMS for brevity. Specifically, multigranularity structure-aware representation learning is designed to learn neighborhood structure representations at the amino acid, atom, and whole protein granularity from AlphaFold predicted structures, followed by utilizing contrastive learning to optimize the structure representations.Additionally, multi-scale sequence representation learning is used to extract context sequence information, and motif generated by aligning all context sequences of PTM sites assists the prediction. Extensive experiments on three datasets show that PTM-CMGMS outperforms the state-of-the-art methods.
8.3CLDec 31, 2024
Have We Designed Generalizable Structural Knowledge Promptings? Systematic Evaluation and RethinkingYichi Zhang, Zhuo Chen, Lingbing Guo et al.
Large language models (LLMs) have demonstrated exceptional performance in text generation within current NLP research. However, the lack of factual accuracy is still a dark cloud hanging over the LLM skyscraper. Structural knowledge prompting (SKP) is a prominent paradigm to integrate external knowledge into LLMs by incorporating structural representations, achieving state-of-the-art results in many knowledge-intensive tasks. However, existing methods often focus on specific problems, lacking a comprehensive exploration of the generalization and capability boundaries of SKP. This paper aims to evaluate and rethink the generalization capability of the SKP paradigm from four perspectives including Granularity, Transferability, Scalability, and Universality. To provide a thorough evaluation, we introduce a novel multi-granular, multi-level benchmark called SUBARU, consisting of 9 different tasks with varying levels of granularity and difficulty.
4.9CLFeb 10, 2025
K-ON: Stacking Knowledge On the Head Layer of Large Language ModelLingbing Guo, Yichi Zhang, Zhongpu Bo et al.
Recent advancements in large language models (LLMs) have significantly improved various natural language processing (NLP) tasks. Typically, LLMs are trained to predict the next token, aligning well with many NLP tasks. However, in knowledge graph (KG) scenarios, entities are the fundamental units and identifying an entity requires at least several tokens. This leads to a granularity mismatch between KGs and natural languages. To address this issue, we propose K-ON, which integrates KG knowledge into the LLM by employing multiple head layers for next k-step prediction. K-ON can not only generate entity-level results in one step, but also enables contrastive loss against entities, which is the most powerful tool in KG representation learning. Experimental results show that K-ON outperforms state-of-the-art methods that incorporate text and even the other modalities.
6.7CLMay 21, 2025
SciCUEval: A Comprehensive Dataset for Evaluating Scientific Context Understanding in Large Language ModelsJing Yu, Yuqi Tang, Kehua Feng et al.
Large Language Models (LLMs) have shown impressive capabilities in contextual understanding and reasoning. However, evaluating their performance across diverse scientific domains remains underexplored, as existing benchmarks primarily focus on general domains and fail to capture the intricate complexity of scientific data. To bridge this gap, we construct SciCUEval, a comprehensive benchmark dataset tailored to assess the scientific context understanding capability of LLMs. It comprises ten domain-specific sub-datasets spanning biology, chemistry, physics, biomedicine, and materials science, integrating diverse data modalities including structured tables, knowledge graphs, and unstructured texts. SciCUEval systematically evaluates four core competencies: Relevant information identification, Information-absence detection, Multi-source information integration, and Context-aware inference, through a variety of question formats. We conduct extensive evaluations of state-of-the-art LLMs on SciCUEval, providing a fine-grained analysis of their strengths and limitations in scientific context understanding, and offering valuable insights for the future development of scientific-domain LLMs.
Learning to Plan for Retrieval-Augmented Large Language Models from Knowledge GraphsJunjie Wang, Mingyang Chen, Binbin Hu et al.
Improving the performance of large language models (LLMs) in complex question-answering (QA) scenarios has always been a research focal point. Recent studies have attempted to enhance LLMs' performance by combining step-wise planning with external retrieval. While effective for advanced models like GPT-3.5, smaller LLMs face challenges in decomposing complex questions, necessitating supervised fine-tuning. Previous work has relied on manual annotation and knowledge distillation from teacher LLMs, which are time-consuming and not accurate enough. In this paper, we introduce a novel framework for enhancing LLMs' planning capabilities by using planning data derived from knowledge graphs (KGs). LLMs fine-tuned with this data have improved planning capabilities, better equipping them to handle complex QA tasks that involve retrieval. Evaluations on multiple datasets, including our newly proposed benchmark, highlight the effectiveness of our framework and the benefits of KG-derived planning data.
Coefficient Decomposition for Spectral Graph ConvolutionFeng Huang, Wen Zhang
Spectral graph convolutional network (SGCN) is a kind of graph neural networks (GNN) based on graph signal filters, and has shown compelling expressivity for modeling graph-structured data. Most SGCNs adopt polynomial filters and learn the coefficients from the training data. Many of them focus on which polynomial basis leads to optimal expressive power and models' architecture is little discussed. In this paper, we propose a general form in terms of spectral graph convolution, where the coefficients of polynomial basis are stored in a third-order tensor. Then, we show that the convolution block in existing SGCNs can be derived by performing a certain coefficient decomposition operation on the coefficient tensor. Based on the generalized view, we develop novel spectral graph convolutions CoDeSGC-CP and -Tucker by tensor decomposition CP and Tucker on the coefficient tensor. Extensive experimental results demonstrate that the proposed convolutions achieve favorable performance improvements.
Towards Better Entity Linking with Multi-View Enhanced DistillationYi Liu, Yuan Tian, Jianxun Lian et al.
Dense retrieval is widely used for entity linking to retrieve entities from large-scale knowledge bases. Mainstream techniques are based on a dual-encoder framework, which encodes mentions and entities independently and calculates their relevances via rough interaction metrics, resulting in difficulty in explicitly modeling multiple mention-relevant parts within entities to match divergent mentions. Aiming at learning entity representations that can match divergent mentions, this paper proposes a Multi-View Enhanced Distillation (MVD) framework, which can effectively transfer knowledge of multiple fine-grained and mention-relevant parts within entities from cross-encoders to dual-encoders. Each entity is split into multiple views to avoid irrelevant information being over-squashed into the mention-relevant view. We further design cross-alignment and self-alignment mechanisms for this framework to facilitate fine-grained knowledge distillation from the teacher model to the student model. Meanwhile, we reserve a global-view that embeds the entity as a whole to prevent dispersal of uniform information. Experiments show our method achieves state-of-the-art performance on several entity linking benchmarks.
18.4AIFeb 15, 2022
Knowledge Graph Reasoning with Logics and Embeddings: Survey and PerspectiveWen Zhang, Jiaoyan Chen, Juan Li et al.
Knowledge graph (KG) reasoning is becoming increasingly popular in both academia and industry. Conventional KG reasoning based on symbolic logic is deterministic, with reasoning results being explainable, while modern embedding-based reasoning can deal with uncertainty and predict plausible knowledge, often with high efficiency via vector computation. A promising direction is to integrate both logic-based and embedding-based methods, with the vision to have advantages of both. It has attracted wide research attention with more and more works published in recent years. In this paper, we comprehensively survey these works, focusing on how logics and embeddings are integrated. We first briefly introduce preliminaries, then systematically categorize and discuss works of logic and embedding-aware KG reasoning from different perspectives, and finally conclude and discuss the challenges and further directions.
7.6AIDec 16, 2021
Knowledge Graph Embedding in E-commerce Applications: Attentive Reasoning, Explanations, and Transferable RulesWen Zhang, Shumin Deng, Mingyang Chen et al.
Knowledge Graphs (KGs), representing facts as triples, have been widely adopted in many applications. Reasoning tasks such as link prediction and rule induction are important for the development of KGs. Knowledge Graph Embeddings (KGEs) embedding entities and relations of a KG into continuous vector spaces, have been proposed for these reasoning tasks and proven to be efficient and robust. But the plausibility and feasibility of applying and deploying KGEs in real-work applications has not been well-explored. In this paper, we discuss and report our experiences of deploying KGEs in a real domain application: e-commerce. We first identity three important desiderata for e-commerce KG systems: 1) attentive reasoning, reasoning over a few target relations of more concerns instead of all; 2) explanation, providing explanations for a prediction to help both users and business operators understand why the prediction is made; 3) transferable rules, generating reusable rules to accelerate the deployment of a KG to new systems. While non existing KGE could meet all these desiderata, we propose a novel one, an explainable knowledge graph attention network that make prediction through modeling correlations between triples rather than purely relying on its head entity, relation and tail entity embeddings. It could automatically selects attentive triples for prediction and records the contribution of them at the same time, from which explanations could be easily provided and transferable rules could be efficiently produced. We empirically show that our method is capable of meeting all three desiderata in our e-commerce application and outperform typical baselines on datasets from real domain applications.
1.6LGDec 16, 2021
HampDTI: a heterogeneous graph automatic meta-path learning method for drug-target interaction predictionHongzhun Wang, Feng Huang, Wen Zhang
Motivation: Identifying drug-target interactions (DTIs) is a key step in drug repositioning. In recent years, the accumulation of a large number of genomics and pharmacology data has formed mass drug and target related heterogeneous networks (HNs), which provides new opportunities of developing HN-based computational models to accurately predict DTIs. The HN implies lots of useful information about DTIs but also contains irrelevant data, and how to make the best of heterogeneous networks remains a challenge. Results: In this paper, we propose a heterogeneous graph automatic meta-path learning based DTI prediction method (HampDTI). HampDTI automatically learns the important meta-paths between drugs and targets from the HN, and generates meta-path graphs. For each meta-path graph, the features learned from drug molecule graphs and target protein sequences serve as the node attributes, and then a node-type specific graph convolutional network (NSGCN) which efficiently considers node type information (drugs or targets) is designed to learn embeddings of drugs and targets. Finally, the embeddings from multiple meta-path graphs are combined to predict novel DTIs. The experiments on benchmark datasets show that our proposed HampDTI achieves superior performance compared with state-of-the-art DTI prediction methods. More importantly, HampDTI identifies the important meta-paths for DTI prediction, which could explain how drugs connect with targets in HNs.
Meta-Knowledge Transfer for Inductive Knowledge Graph EmbeddingMingyang Chen, Wen Zhang, Yushan Zhu et al.
Knowledge graphs (KGs) consisting of a large number of triples have become widespread recently, and many knowledge graph embedding (KGE) methods are proposed to embed entities and relations of a KG into continuous vector spaces. Such embedding methods simplify the operations of conducting various in-KG tasks (e.g., link prediction) and out-of-KG tasks (e.g., question answering). They can be viewed as general solutions for representing KGs. However, existing KGE methods are not applicable to inductive settings, where a model trained on source KGs will be tested on target KGs with entities unseen during model training. Existing works focusing on KGs in inductive settings can only solve the inductive relation prediction task. They can not handle other out-of-KG tasks as general as KGE methods since they don't produce embeddings for entities. In this paper, to achieve inductive knowledge graph embedding, we propose a model MorsE, which does not learn embeddings for entities but learns transferable meta-knowledge that can be used to produce entity embeddings. Such meta-knowledge is modeled by entity-independent modules and learned by meta-learning. Experimental results show that our model significantly outperforms corresponding baselines for in-KG and out-of-KG tasks in inductive settings.
17.8AIMay 2, 2021
Billion-scale Pre-trained E-commerce Product Knowledge Graph ModelWen Zhang, Chi-Man Wong, Ganqiang Ye et al.
In recent years, knowledge graphs have been widely applied to organize data in a uniform way and enhance many tasks that require knowledge, for example, online shopping which has greatly facilitated people's life. As a backbone for online shopping platforms, we built a billion-scale e-commerce product knowledge graph for various item knowledge services such as item recommendation. However, such knowledge services usually include tedious data selection and model design for knowledge infusion, which might bring inappropriate results. Thus, to avoid this problem, we propose a Pre-trained Knowledge Graph Model (PKGM) for our billion-scale e-commerce product knowledge graph, providing item knowledge services in a uniform way for embedding-based models without accessing triple data in the knowledge graph. Notably, PKGM could also complete knowledge graphs during servicing, thereby overcoming the common incompleteness issue in knowledge graphs. We test PKGM in three knowledge-related tasks including item classification, same item identification, and recommendation. Experimental results show PKGM successfully improves the performance of each task.
15.8AINov 25, 2020
Supervised Learning Achieves Human-Level Performance in MOBA Games: A Case Study of Honor of KingsDeheng Ye, Guibin Chen, Peilin Zhao et al.
We present JueWu-SL, the first supervised-learning-based artificial intelligence (AI) program that achieves human-level performance in playing multiplayer online battle arena (MOBA) games. Unlike prior attempts, we integrate the macro-strategy and the micromanagement of MOBA-game-playing into neural networks in a supervised and end-to-end manner. Tested on Honor of Kings, the most popular MOBA at present, our AI performs competitively at the level of High King players in standard 5v5 games.