Junyu Chen

Ye Li, Junyu Chen, Se-in Jang et al.

Inspired by the recent success of Transformers for Natural Language Processing and vision Transformer for Computer Vision, many researchers in the medical imaging community have flocked to Transformer-based networks for various main stream medical tasks such as classification, segmentation, and estimation. In this study, we analyze, two recently published Transformer-based network architectures for the task of multimodal head-and-tumor segmentation and compare their performance to the de facto standard 3D segmentation network - the nnU-Net. Our results showed that modeling long-range dependencies may be helpful in cases where large structures are present and/or large field of view is needed. However, for small structures such as head-and-neck tumor, the convolution-based U-Net architecture seemed to perform well, especially when training dataset is small and computational resource is limited.

Junyu Chen, Norihiro Yoshida, Hiroaki Takada

Dataset licensing is currently an issue in the development of machine learning systems. And in the development of machine learning systems, the most widely used are publicly available datasets. However, since the images in the publicly available dataset are mainly obtained from the Internet, some images are not commercially available. Furthermore, developers of machine learning systems do not often care about the license of the dataset when training machine learning models with it. In summary, the licensing of datasets for machine learning systems is in a state of incompleteness in all aspects at this stage. Our investigation of two collection datasets revealed that most of the current datasets lacked licenses, and the lack of licenses made it impossible to determine the commercial availability of the datasets. Therefore, we decided to take a more scientific and systematic approach to investigate the licensing of datasets and the licensing of machine learning systems that use the dataset to make it easier and more compliant for future developers of machine learning systems.

Junyu Chen, Eric C. Frey

Pixel intensity is a widely used feature for clustering and segmentation algorithms, the resulting segmentation using only intensity values might suffer from noises and lack of spatial context information. Wavelet transform is often used for image denoising and classification. We proposed a novel method to incorporate Wavelet features in segmentation and clustering algorithms. The conventional K-means, Fuzzy c-means (FCM), and Active contour without edges (ACWE) algorithms were modified to adapt Wavelet features, leading to robust clustering/segmentation algorithms. A weighting parameter to control the weight of low-frequency sub-band information was also introduced. The new algorithms showed the capability to converge to different segmentation results based on the frequency information derived from the Wavelet sub-bands.