Yan Liu

CL
h-index32
6papers
423citations
Novelty41%
AI Score33

6 Papers

7.3IVAug 16, 2023Code
AATCT-IDS: A Benchmark Abdominal Adipose Tissue CT Image Dataset for Image Denoising, Semantic Segmentation, and Radiomics Evaluation

Zhiyu Ma, Chen Li, Tianming Du et al.

Methods: In this study, a benchmark \emph{Abdominal Adipose Tissue CT Image Dataset} (AATTCT-IDS) containing 300 subjects is prepared and published. AATTCT-IDS publics 13,732 raw CT slices, and the researchers individually annotate the subcutaneous and visceral adipose tissue regions of 3,213 of those slices that have the same slice distance to validate denoising methods, train semantic segmentation models, and study radiomics. For different tasks, this paper compares and analyzes the performance of various methods on AATTCT-IDS by combining the visualization results and evaluation data. Thus, verify the research potential of this data set in the above three types of tasks. Results: In the comparative study of image denoising, algorithms using a smoothing strategy suppress mixed noise at the expense of image details and obtain better evaluation data. Methods such as BM3D preserve the original image structure better, although the evaluation data are slightly lower. The results show significant differences among them. In the comparative study of semantic segmentation of abdominal adipose tissue, the segmentation results of adipose tissue by each model show different structural characteristics. Among them, BiSeNet obtains segmentation results only slightly inferior to U-Net with the shortest training time and effectively separates small and isolated adipose tissue. In addition, the radiomics study based on AATTCT-IDS reveals three adipose distributions in the subject population. Conclusion: AATTCT-IDS contains the ground truth of adipose tissue regions in abdominal CT slices. This open-source dataset can attract researchers to explore the multi-dimensional characteristics of abdominal adipose tissue and thus help physicians and patients in clinical practice. AATCT-IDS is freely published for non-commercial purpose at: \url{https://figshare.com/articles/dataset/AATTCT-IDS/23807256}.

3.0IVAug 10, 2023
Attention-based 3D CNN with Multi-layer Features for Alzheimer's Disease Diagnosis using Brain Images

Yanteng Zhang, Qizhi Teng, Xiaohai He et al. · salesforce

Structural MRI and PET imaging play an important role in the diagnosis of Alzheimer's disease (AD), showing the morphological changes and glucose metabolism changes in the brain respectively. The manifestations in the brain image of some cognitive impairment patients are relatively inconspicuous, for example, it still has difficulties in achieving accurate diagnosis through sMRI in clinical practice. With the emergence of deep learning, convolutional neural network (CNN) has become a valuable method in AD-aided diagnosis, but some CNN methods cannot effectively learn the features of brain image, making the diagnosis of AD still presents some challenges. In this work, we propose an end-to-end 3D CNN framework for AD diagnosis based on ResNet, which integrates multi-layer features obtained under the effect of the attention mechanism to better capture subtle differences in brain images. The attention maps showed our model can focus on key brain regions related to the disease diagnosis. Our method was verified in ablation experiments with two modality images on 792 subjects from the ADNI database, where AD diagnostic accuracies of 89.71% and 91.18% were achieved based on sMRI and PET respectively, and also outperformed some state-of-the-art methods.

26.5CLJun 27, 2023Code
DSRM: Boost Textual Adversarial Training with Distribution Shift Risk Minimization

Songyang Gao, Shihan Dou, Yan Liu et al.

Adversarial training is one of the best-performing methods in improving the robustness of deep language models. However, robust models come at the cost of high time consumption, as they require multi-step gradient ascents or word substitutions to obtain adversarial samples. In addition, these generated samples are deficient in grammatical quality and semantic consistency, which impairs the effectiveness of adversarial training. To address these problems, we introduce a novel, effective procedure for instead adversarial training with only clean data. Our procedure, distribution shift risk minimization (DSRM), estimates the adversarial loss by perturbing the input data's probability distribution rather than their embeddings. This formulation results in a robust model that minimizes the expected global loss under adversarial attacks. Our approach requires zero adversarial samples for training and reduces time consumption by up to 70\% compared to current best-performing adversarial training methods. Experiments demonstrate that DSRM considerably improves BERT's resistance to textual adversarial attacks and achieves state-of-the-art robust accuracy on various benchmarks.

29.3SEFeb 2, 2024Code
StepCoder: Improve Code Generation with Reinforcement Learning from Compiler Feedback

Shihan Dou, Yan Liu, Haoxiang Jia et al.

The advancement of large language models (LLMs) has significantly propelled the field of code generation. Previous work integrated reinforcement learning (RL) with compiler feedback for exploring the output space of LLMs to enhance code generation quality. However, the lengthy code generated by LLMs in response to complex human requirements makes RL exploration a challenge. Also, since the unit tests may not cover the complicated code, optimizing LLMs by using these unexecuted code snippets is ineffective. To tackle these challenges, we introduce StepCoder, a novel RL framework for code generation, consisting of two main components: CCCS addresses the exploration challenge by breaking the long sequences code generation task into a Curriculum of Code Completion Subtasks, while FGO only optimizes the model by masking the unexecuted code segments to provide Fine-Grained Optimization. In addition, we furthermore construct the APPS+ dataset for RL training, which is manually verified to ensure the correctness of unit tests. Experimental results show that our method improves the ability to explore the output space and outperforms state-of-the-art approaches in corresponding benchmarks. Our dataset APPS+ and StepCoder are available online.

15.9CLDec 15, 2023Code
LoRAMoE: Alleviate World Knowledge Forgetting in Large Language Models via MoE-Style Plugin

Shihan Dou, Enyu Zhou, Yan Liu et al.

Supervised fine-tuning (SFT) is a crucial step for large language models (LLMs), enabling them to align with human instructions and enhance their capabilities in downstream tasks. Increasing instruction data substantially is a direct solution to align the model with a broader range of downstream tasks or notably improve its performance on a specific task. However, we find that large-scale increases in instruction data can damage the world knowledge previously stored in LLMs. To address this challenge, we propose LoRAMoE, a novelty framework that introduces several low-rank adapters (LoRA) and integrates them by using a router network, like a plugin version of Mixture of Experts (MoE). It freezes the backbone model and forces a portion of LoRAs to focus on leveraging world knowledge to solve downstream tasks, to alleviate world knowledge-edge forgetting. Experimental results show that, as the instruction data increases, LoRAMoE can significantly improve the ability to process downstream tasks, while maintaining the world knowledge stored in the LLM.

10.7CRFeb 6, 2024
A Survey of Privacy Threats and Defense in Vertical Federated Learning: From Model Life Cycle Perspective

Lei Yu, Meng Han, Yiming Li et al.

Vertical Federated Learning (VFL) is a federated learning paradigm where multiple participants, who share the same set of samples but hold different features, jointly train machine learning models. Although VFL enables collaborative machine learning without sharing raw data, it is still susceptible to various privacy threats. In this paper, we conduct the first comprehensive survey of the state-of-the-art in privacy attacks and defenses in VFL. We provide taxonomies for both attacks and defenses, based on their characterizations, and discuss open challenges and future research directions. Specifically, our discussion is structured around the model's life cycle, by delving into the privacy threats encountered during different stages of machine learning and their corresponding countermeasures. This survey not only serves as a resource for the research community but also offers clear guidance and actionable insights for practitioners to safeguard data privacy throughout the model's life cycle.