Gözde Ünal

Muhammed Faruk Aytin, Zehra Demir, Alper Ünal et al.

We study regression-based data fusion under uncertainty, where multiple noisy and biased measurement sources are available but ground-truth labels are absent during training. This setting arises in sensor networks, simulation ensembles, and scientific monitoring systems where supervision is costly or infeasible. We propose the Neural Conjugate Aggregation Model (NCAM), a hierarchical Bayesian framework that combines neural networks with conjugate Gaussian inference for unsupervised multi-source fusion. NCAM learns source-specific bias and reliability conditioned on contextual covariates, yielding an analytically tractable posterior over a latent target variable with decomposed epistemic and aleatoric uncertainty. Structural non-identifiability is resolved through sensor anchoring and variance regularization, enabling stable and interpretable posterior aggregation. To complement Bayesian uncertainty with finite-sample guarantees, we integrate locally adaptive Monte Carlo conformal prediction, producing heteroscedastic prediction intervals with coverage guarantees under exchangeability assumptions. Experiments on synthetic and real-world air-quality datasets demonstrate improved predictive accuracy and well-calibrated uncertainty compared to unsupervised baselines, including mean aggregation, probabilistic PCA, and Kalman filtering.

Esra Ergün, Hersh Chandarana, Dan Sodickson et al.

Self-supervised foundation models have shown strong promise in medical imaging. However, existing MRI foundation-model studies have primarily emphasized segmentation and dense prediction tasks, while systematic investigation of self-supervised foundation models for MRI-based disease detection remains limited. In this work, we investigate two major self-supervised pretraining paradigms for MRI-based disease detection: reconstruction-based learning via Masked Autoencoders (MAE) and predictive representation learning via Joint Embedding Predictive Architectures (JEPA). We study the role of auxiliary objectives by introducing a novel spectral-domain reconstruction loss for MAE to enhance sensitivity to fine-grained anatomical structure, and by integrating variance--covariance regularization (VCR) within our JEPA framework to encourage decorrelated latent representations. Our models are pretrained on heterogeneous single-contrast MRI volumes in a contrast-agnostic setting, without modality concatenation. Across five downstream disease detection tasks, our results highlight the importance of self-supervised objective design for medical foundation model pretraining, demonstrating that the downstream benefit of each objective is determined by its relevance to the task's structure. Specifically, spectral regularization yields the largest improvements when the downstream discriminative signal is characterized by strong high-frequency anatomical structures, while covariance regularization is most beneficial when discriminative information spans multiple decorrelated feature dimensions. MAE with spectral-domain supervision consistently achieves superior downstream performance for MRI-based disease detection. These findings suggest that self-supervised objectives in medical imaging encode specific biases, and their downstream benefit is fundamentally conditioned on the task's structure.