Zheng Zhang

Zheng Zhang, Allen Zhang, Ruth Nelson et al.

Geometric trees are characterized by their tree-structured layout and spatially constrained nodes and edges, which significantly impacts their topological attributes. This inherent hierarchical structure plays a crucial role in domains such as neuron morphology and river geomorphology, but traditional graph representation methods often overlook these specific characteristics of tree structures. To address this, we introduce a new representation learning framework tailored for geometric trees. It first features a unique message passing neural network, which is both provably geometrical structure-recoverable and rotation-translation invariant. To address the data label scarcity issue, our approach also includes two innovative training targets that reflect the hierarchical ordering and geometric structure of these geometric trees. This enables fully self-supervised learning without explicit labels. We validate our method's effectiveness on eight real-world datasets, demonstrating its capability to represent geometric trees.

Xianchao Guan, Zhiyuan Fan, Yifeng Wang et al.

The development of clinical-grade artificial intelligence in pathology is limited by the scarcity of diverse, high-quality annotated datasets. Generative models offer a potential solution but suffer from semantic instability and morphological hallucinations that compromise diagnostic reliability. To address this challenge, we introduce a Correlation-Regulated Alignment Framework for Tissue Synthesis (CRAFTS), the first generative foundation model for pathology-specific text-to-image synthesis. By leveraging a dual-stage training strategy on approximately 2.8 million image-caption pairs, CRAFTS incorporates a novel alignment mechanism that suppresses semantic drift to ensure biological accuracy. This model generates diverse pathological images spanning 30 cancer types, with quality rigorously validated by objective metrics and pathologist evaluations. Furthermore, CRAFTS-augmented datasets enhance the performance across various clinical tasks, including classification, cross-modal retrieval, self-supervised learning, and visual question answering. In addition, coupling CRAFTS with ControlNet enables precise control over tissue architecture from inputs such as nuclear segmentation masks and fluorescence images. By overcoming the critical barriers of data scarcity and privacy concerns, CRAFTS provides a limitless source of diverse, annotated histology data, effectively unlocking the creation of robust diagnostic tools for rare and complex cancer phenotypes.

Bo Pan, Zhen Xiong, Guanchen Wu et al.

Graph representation learning has garnered significant attention due to its broad applications in various domains, such as recommendation systems and social network analysis. Despite advancements in graph learning methods, challenges still remain in explainability when graphs are associated with semantic features. In this paper, we present GraphNarrator, the first method designed to generate natural language explanations for Graph Neural Networks. GraphNarrator employs a generative language model that maps input-output pairs to explanations reflecting the model's decision-making process. To address the lack of ground truth explanations to train the model, we propose first generating pseudo-labels that capture the model's decisions from saliency-based explanations, then using Expert Iteration to iteratively train the pseudo-label generator based on training objectives on explanation quality. The high-quality pseudo-labels are finally utilized to train an end-to-end explanation generator model. Extensive experiments are conducted to demonstrate the effectiveness of GraphNarrator in producing faithful, concise, and human-preferred natural language explanations.

Qingkai Min, Qipeng Guo, Xiangkun Hu et al.

Cross-document event coreference resolution (CDECR) involves clustering event mentions across multiple documents that refer to the same real-world events. Existing approaches utilize fine-tuning of small language models (SLMs) like BERT to address the compatibility among the contexts of event mentions. However, due to the complexity and diversity of contexts, these models are prone to learning simple co-occurrences. Recently, large language models (LLMs) like ChatGPT have demonstrated impressive contextual understanding, yet they encounter challenges in adapting to specific information extraction (IE) tasks. In this paper, we propose a collaborative approach for CDECR, leveraging the capabilities of both a universally capable LLM and a task-specific SLM. The collaborative strategy begins with the LLM accurately and comprehensively summarizing events through prompting. Then, the SLM refines its learning of event representations based on these insights during fine-tuning. Experimental results demonstrate that our approach surpasses the performance of both the large and small language models individually, forming a complementary advantage. Across various datasets, our approach achieves state-of-the-art performance, underscoring its effectiveness in diverse scenarios.