Extracting Biological Pathway Models From NLP Event Representations
arXiv:1608.03764v121 citationsHas Code
Originality Synthesis-oriented
AI Analysis
This work addresses the need for systems biology pathway modelers to access NLP results, but it is incremental as it focuses on software implementation for existing conversion efforts.
The paper tackles the problem of converting NLP event representations into structured data formats for systems biology, resulting in an open-source software system that automatically generates SBML and BioPAX formats.
This paper describes an an open-source software system for the automatic conversion of NLP event representations to system biology structured data interchange formats such as SBML and BioPAX. It is part of a larger effort to make results of the NLP community available for system biology pathway modelers.