APCOMEMLSep 23, 2019

Tuning parameter calibration for prediction in personalized medicine

arXiv:1909.10635v32 citations
Originality Incremental advance
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This work addresses the challenge of accounting for patient heterogeneity in personalized medicine predictions, though it appears incremental as it modifies existing ridge regression methods.

The paper tackles the problem of predicting individual drug responses in personalized medicine by developing a tuning parameter calibration scheme for ridge regression that minimizes prediction errors for individual patients rather than average errors. The method is shown to be optimal via oracle inequalities and effective in simulations and real data.

Personalized medicine has become an important part of medicine, for instance predicting individual drug responses based on genomic information. However, many current statistical methods are not tailored to this task, because they overlook the individual heterogeneity of patients. In this paper, we look at personalized medicine from a linear regression standpoint. We introduce an alternative version of the ridge estimator and target individuals by establishing a tuning parameter calibration scheme that minimizes prediction errors of individual patients. In stark contrast, classical schemes such as cross-validation minimize prediction errors only on average. We show that our pipeline is optimal in terms of oracle inequalities, fast, and highly effective both in simulations and on real data.

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