Boosting Graph Foundation Model from Structural Perspective
This work addresses the challenge of generalizing graph models across domains by focusing on structural unification, representing an incremental improvement over existing methods that rely on language models.
The paper tackles the problem of graph foundation models overlooking structural characteristics across domains by proposing BooG, which uses virtual super nodes and a contrastive pre-training objective to unify structural features, achieving superior performance on various datasets and tasks.
Graph foundation models have recently attracted significant attention due to its strong generalizability. Although existing methods resort to language models to learn unified semantic representations across domains, they disregard the unique structural characteristics of graphs from different domains. To address the problem, in this paper, we boost graph foundation model from structural perspective and propose BooG. The model constructs virtual super nodes to unify structural characteristics of graph data from different domains. Specifically, the super nodes fuse the information of anchor nodes and class labels, where each anchor node captures the information of a node or a graph instance to be classified. Instead of using the raw graph structure, we connect super nodes to all nodes within their neighborhood by virtual edges. This new structure allows for effective information aggregation while unifying cross-domain structural characteristics. Additionally, we propose a novel pre-training objective based on contrastive learning, which learns more expressive representations for graph data and generalizes effectively to different domains and downstream tasks. Experimental results on various datasets and tasks demonstrate the superior performance of BooG. We provide our code and data here: https://anonymous.4open.science/r/BooG-EE42/.