LGAIJun 19, 2025

Progressive Inference-Time Annealing of Diffusion Models for Sampling from Boltzmann Densities

arXiv:2506.16471v224 citationsh-index: 26Has Code
Originality Highly original
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This work addresses a core problem in scientific computing for researchers in fields like chemistry and physics, offering a novel method for scalable sampling from high-dimensional distributions.

The paper tackles the challenge of efficiently sampling from unnormalized probability densities, such as Boltzmann distributions in molecular systems, by proposing Progressive Inference-Time Annealing (PITA), a diffusion-based framework that enables equilibrium sampling of complex systems like N-body particles and peptides with significantly reduced energy function evaluations.

Sampling efficiently from a target unnormalized probability density remains a core challenge, with relevance across countless high-impact scientific applications. A promising approach towards this challenge is the design of amortized samplers that borrow key ideas, such as probability path design, from state-of-the-art generative diffusion models. However, all existing diffusion-based samplers remain unable to draw samples from distributions at the scale of even simple molecular systems. In this paper, we propose Progressive Inference-Time Annealing (PITA), a novel framework to learn diffusion-based samplers that combines two complementary interpolation techniques: I.) Annealing of the Boltzmann distribution and II.) Diffusion smoothing. PITA trains a sequence of diffusion models from high to low temperatures by sequentially training each model at progressively higher temperatures, leveraging engineered easy access to samples of the temperature-annealed target density. In the subsequent step, PITA enables simulating the trained diffusion model to procure training samples at a lower temperature for the next diffusion model through inference-time annealing using a novel Feynman-Kac PDE combined with Sequential Monte Carlo. Empirically, PITA enables, for the first time, equilibrium sampling of N-body particle systems, Alanine Dipeptide, and tripeptides in Cartesian coordinates with dramatically lower energy function evaluations. Code available at: https://github.com/taraak/pita

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