LGJun 20, 2025

Exploring and Improving Initialization for Deep Graph Neural Networks: A Signal Propagation Perspective

arXiv:2506.16790v2h-index: 8Trans. Mach. Learn. Res.
Originality Incremental advance
AI Analysis

This addresses a critical bottleneck for researchers and practitioners using deep GNNs, though it is incremental as it builds on existing signal propagation theory.

The paper tackled the performance degradation of Graph Neural Networks (GNNs) with increasing depth by introducing initialization methods that enhance signal propagation, resulting in SPoGInit outperforming common methods and enabling performance improvements as GNNs deepen.

Graph Neural Networks (GNNs) often suffer from performance degradation as the network depth increases. This paper addresses this issue by introducing initialization methods that enhance signal propagation (SP) within GNNs. We propose three key metrics for effective SP in GNNs: forward propagation, backward propagation, and graph embedding variation (GEV). While the first two metrics derive from classical SP theory, the third is specifically designed for GNNs. We theoretically demonstrate that a broad range of commonly used initialization methods for GNNs, which exhibit performance degradation with increasing depth, fail to control these three metrics simultaneously. To deal with this limitation, a direct exploitation of the SP analysis--searching for weight initialization variances that optimize the three metrics--is shown to significantly enhance the SP in deep GCNs. This approach is called Signal Propagation on Graph-guided Initialization (SPoGInit). Our experiments demonstrate that SPoGInit outperforms commonly used initialization methods on various tasks and architectures. Notably, SPoGInit enables performance improvements as GNNs deepen, which represents a significant advancement in addressing depth-related challenges and highlights the validity and effectiveness of the SP analysis framework.

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