LGAIAug 23, 2025

Two Birds with One Stone: Enhancing Uncertainty Quantification and Interpretability with Graph Functional Neural Process

arXiv:2508.17097v15 citationsh-index: 20AISTATS
Originality Incremental advance
AI Analysis

This addresses the need for reliable and explainable GNNs in critical domains, representing an incremental improvement by integrating existing techniques for uncertainty and interpretability.

The paper tackled the problem of mis-calibrated predictions and lack of interpretability in graph neural networks (GNNs) for critical applications, proposing a model that combines graph functional neural process and graph generative model, which outperformed state-of-the-art methods on five graph classification datasets in both uncertainty quantification and interpretability.

Graph neural networks (GNNs) are powerful tools on graph data. However, their predictions are mis-calibrated and lack interpretability, limiting their adoption in critical applications. To address this issue, we propose a new uncertainty-aware and interpretable graph classification model that combines graph functional neural process and graph generative model. The core of our method is to assume a set of latent rationales which can be mapped to a probabilistic embedding space; the predictive distribution of the classifier is conditioned on such rationale embeddings by learning a stochastic correlation matrix. The graph generator serves to decode the graph structure of the rationales from the embedding space for model interpretability. For efficient model training, we adopt an alternating optimization procedure which mimics the well known Expectation-Maximization (EM) algorithm. The proposed method is general and can be applied to any existing GNN architecture. Extensive experiments on five graph classification datasets demonstrate that our framework outperforms state-of-the-art methods in both uncertainty quantification and GNN interpretability. We also conduct case studies to show that the decoded rationale structure can provide meaningful explanations.

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