MinatoLoader: Accelerating Machine Learning Training Through Efficient Data Preprocessing
This addresses a critical bottleneck in ML training workflows for practitioners using frameworks like PyTorch, though it is an incremental improvement over existing data loaders.
The paper tackles inefficiencies in data preprocessing during machine learning training, which cause high GPU idleness, by introducing MinatoLoader, a data loader that prioritizes fast-to-preprocess samples, resulting in up to 7.5x faster training and increased GPU utilization from 46.4% to 90.45%.
Data loaders are used by Machine Learning (ML) frameworks like PyTorch and TensorFlow to apply transformations to data before feeding it into the accelerator. This operation is called data preprocessing. Data preprocessing plays an important role in the ML training workflow because if it is inefficiently pipelined with the training, it can yield high GPU idleness, resulting in important training delays. Unfortunately, existing data loaders turn out to waste GPU resources, with $76\%$ GPU idleness when using the PyTorch data loader, for example. One key source of inefficiency is the variability in preprocessing time across samples within the same dataset. Existing data loaders are oblivious to this variability, and they construct batches without any consideration of slow or fast samples. In this case, the entire batch is delayed by a single slow sample, stalling the training pipeline and resulting in head-of-line blocking. To address these inefficiencies, we present MinatoLoader, a general-purpose data loader for PyTorch that accelerates training and improves GPU utilization. MinatoLoader is designed for a single-server setup, containing multiple GPUs. It continuously prepares data in the background and actively constructs batches by prioritizing fast-to-preprocess samples, while slower samples are processed in parallel. We evaluate MinatoLoader on servers with V100 and A100 GPUs. On a machine with four A100 GPUs, MinatoLoader improves the training time of a wide range of workloads by up to $7.5\times$ ($3.6\times$ on average) over PyTorch DataLoader and Pecan, and up to $3\times$ ($2.2\times$ on average) over DALI. It also increases average GPU utilization from 46.4\% with PyTorch to 90.45\%, while preserving model accuracy and enabling faster convergence.