MLLGOct 24, 2025

HollowFlow: Efficient Sample Likelihood Evaluation using Hollow Message Passing

arXiv:2510.21542v14 citationsh-index: 2
Originality Incremental advance
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This addresses computational bottlenecks for researchers using Boltzmann Generators in scientific domains, though it is incremental as it builds on existing flow-based methods.

The paper tackled the problem of inefficient sample likelihood evaluation in flow-based models for large-scale scientific applications by introducing HollowFlow, which uses a non-backtracking graph neural network to achieve constant-time likelihood evaluations, resulting in up to a 100x speed-up for larger systems.

Flow and diffusion-based models have emerged as powerful tools for scientific applications, particularly for sampling non-normalized probability distributions, as exemplified by Boltzmann Generators (BGs). A critical challenge in deploying these models is their reliance on sample likelihood computations, which scale prohibitively with system size $n$, often rendering them infeasible for large-scale problems. To address this, we introduce $\textit{HollowFlow}$, a flow-based generative model leveraging a novel non-backtracking graph neural network (NoBGNN). By enforcing a block-diagonal Jacobian structure, HollowFlow likelihoods are evaluated with a constant number of backward passes in $n$, yielding speed-ups of up to $\mathcal{O}(n^2)$: a significant step towards scaling BGs to larger systems. Crucially, our framework generalizes: $\textbf{any equivariant GNN or attention-based architecture}$ can be adapted into a NoBGNN. We validate HollowFlow by training BGs on two different systems of increasing size. For both systems, the sampling and likelihood evaluation time decreases dramatically, following our theoretical scaling laws. For the larger system we obtain a $10^2\times$ speed-up, clearly illustrating the potential of HollowFlow-based approaches for high-dimensional scientific problems previously hindered by computational bottlenecks.

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