Domain-Filtered Knowledge Graphs from Sparse Autoencoder Features
For interpretability researchers, this provides a method to organize SAE features into structured knowledge graphs, enabling audits of model reasoning faithfulness.
The authors transform flat sparse autoencoder feature inventories into domain-specific knowledge graphs using contrastive activations and multi-stage filtering, then build co-occurrence and mechanism graphs with automated edge labeling. In a biology textbook case study, the graphs recover coherent chapter structure and reduce thousands of features into compact, readable views.
Sparse autoencoders (SAEs) extract millions of interpretable features from a language model, but flat feature inventories aren't very useful on their own. Domain concepts get mixed with generic and weakly grounded features, while related ideas are scattered across many units, and there's no way to understand relationships between features. We address this by first constructing a strict domain-specific concept universe from a large SAE inventory using contrastive activations and a multi-stage filtering process. Next, we build two aligned graph views on the filtered set: a co-occurrence graph for corpus-level conceptual structure, organized at multiple levels of granularity, and a transcoder-based mechanism graph that links source-layer and target-layer features through sparse latent pathways. Automated edge labeling then turns these graph views into readable knowledge graphs rather than unlabeled layouts. In a case study on a biology textbook, these graphs recover coherent chapter and subchapter-level structure, reveal concepts that bridge neighboring topics, and transform messy sentence-level activity containing thousands of features into compact, readable views that illustrate the model's local activity. Taken together, this reframes a flat SAE inventory as an internal knowledge graph that converts feature-level interpretability into a global map of model knowledge and enables audits of reasoning faithfulness.