Dai Shi

Luke Thompson, Dai Shi, Lequan Lin et al.

Neural rough differential equations (NRDEs) stay accurate under irregular sampling while taking far fewer integration steps than standard neural differential equations, summarising a finely sampled driver by its log-signature and advancing the hidden state over coarse intervals using the log-ODE method. This efficiency rests on the shuffle algebra, the algebraic counterpart of Stratonovich calculus. This reliance means NRDEs cannot expose the quadratic-variation terms Itô dynamics require, nor the ordered covariant derivatives that govern Itô flows on connection-equipped manifolds. Ameliorating this, we introduce Branched Neural Rough Differential Equations (B-NRDEs), a Hopf-algebraic framework that recasts the NRDE log-ODE step as geometric numerical integration on the state-space manifold, matching the driving algebra to the governing calculus: Grossman--Larson rooted trees for Euclidean Itô dynamics, Munthe-Kaas--Wright planar rooted trees for ordered covariant derivatives on manifolds, and the shuffle algebra in the classical Stratonovich case. This yields intrinsic coarse-step dynamics that exactly preserve manifold constraints. Finally, we introduce a branched signature-kernel objective to enable Itô-consistent law matching by making quadratic-variation terms visible during training. On rough Bergomi volatility, sim-to-real $\mathrm{SO}(3)$ dynamics forecasting, and SPD covariance dynamics, B-NRDEs offer a unified, effective approach to stochastic and manifold-valued dynamics beyond the Euclidean--Stratonovich setting.

Zhiqi Shao, Dai Shi, Andi Han et al. · tsinghua

Graph Neural Networks (GNNs) have emerged as one of the leading approaches for machine learning on graph-structured data. Despite their great success, critical computational challenges such as over-smoothing, over-squashing, and limited expressive power continue to impact the performance of GNNs. In this study, inspired from the time-reversal principle commonly utilized in classical and quantum physics, we reverse the time direction of the graph heat equation. The resulted reversing process yields a class of high pass filtering functions that enhance the sharpness of graph node features. Leveraging this concept, we introduce the Multi-Scaled Heat Kernel based GNN (MHKG) by amalgamating diverse filtering functions' effects on node features. To explore more flexible filtering conditions, we further generalize MHKG into a model termed G-MHKG and thoroughly show the roles of each element in controlling over-smoothing, over-squashing and expressive power. Notably, we illustrate that all aforementioned issues can be characterized and analyzed via the properties of the filtering functions, and uncover a trade-off between over-smoothing and over-squashing: enhancing node feature sharpness will make model suffer more from over-squashing, and vice versa. Furthermore, we manipulate the time again to show how G-MHKG can handle both two issues under mild conditions. Our conclusive experiments highlight the effectiveness of proposed models. It surpasses several GNN baseline models in performance across graph datasets characterized by both homophily and heterophily.

Dai Shi, Luke Thompson, Linhan Luo et al.

Message-passing neural networks (MPNNs) often suffer from an information bottleneck when capturing long-range dependencies, leading to the oversquashing (OSQ) phenomenon. Alongside spatial connectivity enrichment (e.g., rewiring), recent studies have shown that spectral filtering can yield strong long-range learning outcomes, as spectral operators enable global information mixing that alleviates OSQ. These approaches achieve this either by stabilizing the Jacobian energies in deep propagation or by guaranteeing OSQ mitigation under strong theoretical assumptions. We revisit these conclusions and show that the associated Jacobian sensitivity lower bound is generally difficult to achieve in practice. We then propose S$^3$GNN, which mitigates OSQ without such restrictive assumptions by lightweightly reintroducing omitted components with substantially lower computational complexity, while standard stability constraints on feature transformations remain effective under our new dynamics. Extensive experiments across diverse domains (e.g., long-range benchmarks, KGQA, and mesh-based fluid dynamics) demonstrate that S$^3$GNN achieves up to an order-of-magnitude error reduction with up to 50\% fewer parameters. Our code can be found in https://github.com/EEthanShi/S3-GNN.git.

Andi Han, Dai Shi, Zhiqi Shao et al.

In this work, we provide a theoretical understanding of the framelet-based graph neural networks through the perspective of energy gradient flow. By viewing the framelet-based models as discretized gradient flows of some energy, we show it can induce both low-frequency and high-frequency-dominated dynamics, via the separate weight matrices for different frequency components. This substantiates its good empirical performance on both homophilic and heterophilic graphs. We then propose a generalized energy via framelet decomposition and show its gradient flow leads to a novel graph neural network, which includes many existing models as special cases. We then explain how the proposed model generally leads to more flexible dynamics, thus potentially enhancing the representation power of graph neural networks.

Dai Shi, Andi Han, Lequan Lin et al.

Graph-based message-passing neural networks (MPNNs) have achieved remarkable success in both node and graph-level learning tasks. However, several identified problems, including over-smoothing (OSM), limited expressive power, and over-squashing (OSQ), still limit the performance of MPNNs. In particular, OSQ serves as the latest identified problem, where MPNNs gradually lose their learning accuracy when long-range dependencies between graph nodes are required. In this work, we provide an exposition on the OSQ problem by summarizing different formulations of OSQ from current literature, as well as the three different categories of approaches for addressing the OSQ problem. In addition, we also discuss the alignment between OSQ and expressive power and the trade-off between OSQ and OSM. Furthermore, we summarize the empirical methods leveraged from existing works to verify the efficiency of OSQ mitigation approaches, with illustrations of their computational complexities. Lastly, we list some open questions that are of interest for further exploration of the OSQ problem along with potential directions from the best of our knowledge.

Dai Shi, Yi Guo, Zhiqi Shao et al.

Graph neural network (GNN) has been demonstrated powerful in modeling graph-structured data. However, despite many successful cases of applying GNNs to various graph classification and prediction tasks, whether the graph geometrical information has been fully exploited to enhance the learning performance of GNNs is not yet well understood. This paper introduces a new approach to enhance GNN by discrete graph Ricci curvature. Specifically, the graph Ricci curvature defined on the edges of a graph measures how difficult the information transits on one edge from one node to another based on their neighborhoods. Motivated by the geometric analogy of Ricci curvature in the graph setting, we prove that by inserting the curvature information with different carefully designed transformation function $ζ$, several known computational issues in GNN such as over-smoothing can be alleviated in our proposed model. Furthermore, we verified that edges with very positive Ricci curvature (i.e., $κ_{i,j} \approx 1$) are preferred to be dropped to enhance model's adaption to heterophily graph and one curvature based graph edge drop algorithm is proposed. Comprehensive experiments show that our curvature-based GNN model outperforms the state-of-the-art baselines in both homophily and heterophily graph datasets, indicating the effectiveness of involving graph geometric information in GNNs.

Andi Han, Dai Shi, Lequan Lin et al.

Graph neural networks (GNNs) have demonstrated significant promise in modelling relational data and have been widely applied in various fields of interest. The key mechanism behind GNNs is the so-called message passing where information is being iteratively aggregated to central nodes from their neighbourhood. Such a scheme has been found to be intrinsically linked to a physical process known as heat diffusion, where the propagation of GNNs naturally corresponds to the evolution of heat density. Analogizing the process of message passing to the heat dynamics allows to fundamentally understand the power and pitfalls of GNNs and consequently informs better model design. Recently, there emerges a plethora of works that proposes GNNs inspired from the continuous dynamics formulation, in an attempt to mitigate the known limitations of GNNs, such as oversmoothing and oversquashing. In this survey, we provide the first systematic and comprehensive review of studies that leverage the continuous perspective of GNNs. To this end, we introduce foundational ingredients for adapting continuous dynamics to GNNs, along with a general framework for the design of graph neural dynamics. We then review and categorize existing works based on their driven mechanisms and underlying dynamics. We also summarize how the limitations of classic GNNs can be addressed under the continuous framework. We conclude by identifying multiple open research directions.

Dai Shi, Zhiqi Shao, Yi Guo et al.

Knowledge distillation (KD) has shown great potential for transferring knowledge from a complex teacher model to a simple student model in which the heavy learning task can be accomplished efficiently and without losing too much prediction accuracy. Recently, many attempts have been made by applying the KD mechanism to the graph representation learning models such as graph neural networks (GNNs) to accelerate the model's inference speed via student models. However, many existing KD-based GNNs utilize MLP as a universal approximator in the student model to imitate the teacher model's process without considering the graph knowledge from the teacher model. In this work, we provide a KD-based framework on multi-scaled GNNs, known as graph framelet, and prove that by adequately utilizing the graph knowledge in a multi-scaled manner provided by graph framelet decomposition, the student model is capable of adapting both homophilic and heterophilic graphs and has the potential of alleviating the over-squashing issue with a simple yet effectively graph surgery. Furthermore, we show how the graph knowledge supplied by the teacher is learned and digested by the student model via both algebra and geometry. Comprehensive experiments show that our proposed model can generate learning accuracy identical to or even surpass the teacher model while maintaining the high speed of inference.

Sand. ai, Hansi Teng, Hongyu Jia et al.

We present MAGI-1, a world model that generates videos by autoregressively predicting a sequence of video chunks, defined as fixed-length segments of consecutive frames. Trained to denoise per-chunk noise that increases monotonically over time, MAGI-1 enables causal temporal modeling and naturally supports streaming generation. It achieves strong performance on image-to-video (I2V) tasks conditioned on text instructions, providing high temporal consistency and scalability, which are made possible by several algorithmic innovations and a dedicated infrastructure stack. MAGI-1 facilitates controllable generation via chunk-wise prompting and supports real-time, memory-efficient deployment by maintaining constant peak inference cost, regardless of video length. The largest variant of MAGI-1 comprises 24 billion parameters and supports context lengths of up to 4 million tokens, demonstrating the scalability and robustness of our approach. The code and models are available at https://github.com/SandAI-org/MAGI-1 and https://github.com/SandAI-org/MagiAttention. The product can be accessed at https://sand.ai.

Dai Shi

Due to the depth degradation effect in residual connections, many efficient Vision Transformers models that rely on stacking layers for information exchange often fail to form sufficient information mixing, leading to unnatural visual perception. To address this issue, in this paper, we propose Aggregated Attention, a biomimetic design-based token mixer that simulates biological foveal vision and continuous eye movement while enabling each token on the feature map to have a global perception. Furthermore, we incorporate learnable tokens that interact with conventional queries and keys, which further diversifies the generation of affinity matrices beyond merely relying on the similarity between queries and keys. Our approach does not rely on stacking for information exchange, thus effectively avoiding depth degradation and achieving natural visual perception. Additionally, we propose Convolutional GLU, a channel mixer that bridges the gap between GLU and SE mechanism, which empowers each token to have channel attention based on its nearest neighbor image features, enhancing local modeling capability and model robustness. We combine aggregated attention and convolutional GLU to create a new visual backbone called TransNeXt. Extensive experiments demonstrate that our TransNeXt achieves state-of-the-art performance across multiple model sizes. At a resolution of $224^2$, TransNeXt-Tiny attains an ImageNet accuracy of 84.0%, surpassing ConvNeXt-B with 69% fewer parameters. Our TransNeXt-Base achieves an ImageNet accuracy of 86.2% and an ImageNet-A accuracy of 61.6% at a resolution of $384^2$, a COCO object detection mAP of 57.1, and an ADE20K semantic segmentation mIoU of 54.7.

Zhiqi Shao, Andi Han, Dai Shi et al.

This paper introduces a novel Framelet Graph approach based on p-Laplacian GNN. The proposed two models, named p-Laplacian undecimated framelet graph convolution (pL-UFG) and generalized p-Laplacian undecimated framelet graph convolution (pL-fUFG) inherit the nature of p-Laplacian with the expressive power of multi-resolution decomposition of graph signals. The empirical study highlights the excellent performance of the pL-UFG and pL-fUFG in different graph learning tasks including node classification and signal denoising.

Pratik Jawanpuria, Dai Shi, Bamdev Mishra et al.

Optimal transport (OT) theory has attracted much attention in machine learning and signal processing applications. OT defines a notion of distance between probability distributions of source and target data points. A crucial factor that influences OT-based distances is the ground metric of the embedding space in which the source and target data points lie. In this work, we propose to learn a suitable latent ground metric parameterized by a symmetric positive definite matrix. We use the rich Riemannian geometry of symmetric positive definite matrices to jointly learn the OT distance along with the ground metric. Empirical results illustrate the efficacy of the learned metric in OT-based domain adaptation.

Jiayu Zhai, Lequan Lin, Dai Shi et al.

Numerous recent research on graph neural networks (GNNs) has focused on formulating GNN architectures as an optimization problem with the smoothness assumption. However, in node classification tasks, the smoothing effect induced by GNNs tends to assimilate representations and over-homogenize labels of connected nodes, leading to adverse effects such as over-smoothing and misclassification. In this paper, we propose a novel bilevel optimization framework for GNNs inspired by the notion of Bregman distance. We demonstrate that the GNN layer proposed accordingly can effectively mitigate the over-smoothing issue by introducing a mechanism reminiscent of the "skip connection". We validate our theoretical results through comprehensive empirical studies in which Bregman-enhanced GNNs outperform their original counterparts in both homophilic and heterophilic graphs. Furthermore, our experiments also show that Bregman GNNs can produce more robust learning accuracy even when the number of layers is high, suggesting the effectiveness of the proposed method in alleviating the over-smoothing issue.

Zeyu Wang, Chang Liu, Eduardus Tjitrahardja et al.

Despite extensive efforts on egocentric video datasets and benchmarks, understanding users' internal states, which is crucial for enabling seamless AI assistant experiences, remains largely overlooked. In this work, we introduce EgoIntrospect, the first egocentric dataset captured in user-driven scenarios with self-annotations that explicitly reveal users' interactive intentions with AI assistants. EgoIntrospect was collected using a cross-device setup, providing synchronized video, audio, gaze, motion, and physiological signals. It consists of 180 hours of recordings from 60 subjects, with an average recording duration of 3 hours per subject. Leveraging EgoIntrospect, we formalize a suite of tasks centered on user internal states, including affective experience, interactive intent, and cognitive memory. We further process the annotations to construct benchmarks that evaluate the ability of modern multimodal large language models to reason about users' internal states from egocentric observations. Experiments on our benchmark suggest that existing multimodal large language models struggle to effectively leverage multimodal signals to infer users' subjective internal states. The dataset and annotations will be made publicly available to advance research in egocentric vision and wearable AI assistants. Project page: https://ego-introspect.github.io/

Kuan Yan, Yue Zeng, Dai Shi et al.

Age-related macular degeneration (AMD) is a major cause of blindness in older adults, severely affecting vision and quality of life. Despite advances in understanding AMD, the molecular factors driving the severity of subretinal scarring (fibrosis) remain elusive, hampering the development of effective therapies. This study introduces a machine learning-based framework to predict key genes that are strongly correlated with lesion severity and to identify potential therapeutic targets to prevent subretinal fibrosis in AMD. Using an original RNA sequencing (RNA-seq) dataset from the diseased retinas of JR5558 mice, we developed a novel and specific feature engineering technique, including pathway-based dimensionality reduction and gene-based feature expansion, to enhance prediction accuracy. Two iterative experiments were conducted by leveraging Ridge and ElasticNet regression models to assess biological relevance and gene impact. The results highlight the biological significance of several key genes and demonstrate the framework's effectiveness in identifying novel therapeutic targets. The key findings provide valuable insights for advancing drug discovery efforts and improving treatment strategies for AMD, with the potential to enhance patient outcomes by targeting the underlying genetic mechanisms of subretinal lesion development.

Lequan Lin, Dai Shi, Andi Han et al.

Supervised learning relies on high-quality labeled data, but obtaining such data through human annotation is both expensive and time-consuming. Recent work explores using large language models (LLMs) for annotation, but LLM-generated labels still fall short of human-level quality. To address this problem, we propose the Annotation with Critical Thinking (ACT) data pipeline, where LLMs serve not only as annotators but also as judges to critically identify potential errors. Human effort is then directed towards reviewing only the most "suspicious" cases, significantly improving the human annotation efficiency. Our major contributions are as follows: (1) ACT is applicable to a wide range of domains, including natural language processing (NLP), computer vision (CV), and multimodal understanding, by leveraging multimodal-LLMs (MLLMs). (2) Through empirical studies, we derive 7 insights on how to enhance annotation quality while efficiently reducing the human cost, and then translate these findings into user-friendly guidelines. (3) We theoretically analyze how to modify the loss function so that models trained on ACT data achieve similar performance to those trained on fully human-annotated data. Our experiments show that the performance gap can be reduced to less than 2% on most benchmark datasets while saving up to 90% of human costs.

Suli Wang, Yiqun Duan, Yu Deng et al.

Existing agent memory remains predominantly reactive and retrieval-based, lacking the capacity to autonomously organize experience into persistent cognitive structure. Toward genuinely autonomous agents, we introduce Cognifold, a brain-inspired "always-on" agent memory designed for the next generation of proactive assistants. CogniFold continuously folds fragmented event streams into self-emerging cognitive structures, bootstrapping progressively higher-level cognition from incoming events and accumulated knowledge. We ground this by extending Complementary Learning Systems (CLS) theory from two layers (hippocampus, neocortex) to three, adding a prefrontal intent layer. Emulating the prefrontal cortex as the locus of intentional control and decision-making, CogniFold achieves this through graph-topology self-organization: cognitive structures proactively assemble under the stream, merge when semantically similar, decay when stale, relink through associative recall, and surface intents when concept-cluster density crosses a threshold. We evaluate structural formation using CogEval-Bench, demonstrating that CogniFold uniquely produces memory structures that match cognitive expectations and concept emergence. Furthermore, across 7 broad-coverage benchmarks spanning five cognitive domains, we validate that CogniFold simultaneously performs robustly on conventional memory benchmarks.

Lanxin Zhao, Bamdev Mishra, Pratik Jawanpuria et al.

Orthogonal parameter-efficient fine-tuning (PEFT) adapts pretrained weights through structure-preserving multiplicative transformations, but existing methods often conflate two distinct design choices: the subspace in which adaptation occurs and the transformation applied within that subspace. This paper introduces LOFT, a low-rank orthogonal fine-tuning framework that explicitly separates these two components. By viewing orthogonal adaptation as a multiplicative subspace rotation, LOFT provides a unified formulation that recovers representative orthogonal PEFT methods, including coordinate-, butterfly-, Householder-, and principal-subspace-based variants. More importantly, this perspective exposes support selection as a central design axis rather than a byproduct of a particular parameterization. We develop a first-order analysis showing that useful adaptation supports should be informed by the downstream training signal, motivating practical task-aware support selection strategies. Across language understanding, visual transfer, mathematical reasoning, and multilingual out-of-distribution adaptation, LOFT recovers principal-subspace orthogonal adaptation while gradient-informed supports improve the efficiency-performance trade-off under matched parameter, memory, and compute budgets. These results suggest that principled support selection is an important direction for improving orthogonal PEFT.

Lequan Lin, Dai Shi, Andi Han et al.

Graph Neural Networks (GNNs) are deep-learning architectures designed for graph-type data, where understanding relationships among individual observations is crucial. However, achieving promising GNN performance, especially on unseen data, requires comprehensive hyperparameter tuning and meticulous training. Unfortunately, these processes come with high computational costs and significant human effort. Additionally, conventional searching algorithms such as grid search may result in overfitting on validation data, diminishing generalization accuracy. To tackle these challenges, we propose a graph conditional latent diffusion framework (GNN-Diff) to generate high-performing GNNs directly by learning from checkpoints saved during a light-tuning coarse search. Our method: (1) unleashes GNN training from heavy tuning and complex search space design; (2) produces GNN parameters that outperform those obtained through comprehensive grid search; and (3) establishes higher-quality generation for GNNs compared to diffusion frameworks designed for general neural networks.

Dai Shi, Kuan Yan, Lequan Lin et al.

Understanding disease progression at the molecular pathway level usually requires capturing both structural dependencies between pathways and the temporal dynamics of disease evolution. In this work, we solve the former challenge by developing a biologically informed graph-forming method to efficiently construct pathway graphs for subjects from our newly curated JR5558 mouse transcriptomics dataset. We then develop Graph-level Pseudotime Analysis (GPA) to infer graph-level trajectories that reveal how disease progresses at the population level, rather than in individual subjects. Based on the trajectories estimated by GPA, we identify the most sensitive pathways that drive disease stage transitions. In addition, we measure changes in pathway features using neural stochastic differential equations (SDEs), which enables us to formally define and compute pathway stability and disease bifurcation points (points of no return), two fundamental problems in disease progression research. We further extend our theory to the case when pathways can interact with each other, enabling a more comprehensive and multi-faceted characterization of disease phenotypes. The comprehensive experimental results demonstrate the effectiveness of our framework in reconstructing the dynamics of the pathway, identifying critical transitions, and providing novel insights into the mechanistic understanding of disease evolution.

Luke Thompson, Davy Guan, Dai Shi et al.

Molecular dynamics (MD) simulations underpin modern computational drug dis- covery, materials science, and biochemistry. Recent machine learning models provide high-fidelity MD predictions without the need to repeatedly solve quantum mechanical forces, enabling significant speedups over conventional pipelines. Yet many such methods typically enforce strict equivariance and rely on sequential rollouts, thus limiting their flexibility and simulation efficiency. They are also com- monly single-task, trained on individual molecules and fixed timeframes, which restricts generalization to unseen compounds and extended timesteps. To address these issues, we propose Atomistic Transformer Operator for Molecules (ATOM), a pretrained transformer neural operator for multitask molecular dynamics. ATOM adopts a quasi-equivariant design that requires no explicit molecular graph and employs a temporal attention mechanism, allowing for the accurate parallel decod- ing of multiple future states. To support operator pretraining across chemicals and timescales, we curate TG80, a large, diverse, and numerically stable MD dataset with over 2.5 million femtoseconds of trajectories across 80 compounds. ATOM achieves state-of-the-art performance on established single-task benchmarks, such as MD17, RMD17 and MD22. After multitask pretraining on TG80, ATOM shows exceptional zero-shot generalization to unseen molecules across varying time hori- zons. We believe ATOM represents a significant step toward accurate, efficient, and transferable molecular dynamics models

Dai Shi, Andi Han, Lequan Lin et al.

Physics-informed Graph Neural Networks have achieved remarkable performance in learning through graph-structured data by mitigating common GNN challenges such as over-smoothing, over-squashing, and heterophily adaption. Despite these advancements, the development of a simple yet effective paradigm that appropriately integrates previous methods for handling all these challenges is still underway. In this paper, we draw an analogy between the propagation of GNNs and particle systems in physics, proposing a model-agnostic enhancement framework. This framework enriches the graph structure by introducing additional nodes and rewiring connections with both positive and negative weights, guided by node labeling information. We theoretically verify that GNNs enhanced through our approach can effectively circumvent the over-smoothing issue and exhibit robustness against over-squashing. Moreover, we conduct a spectral analysis on the rewired graph to demonstrate that the corresponding GNNs can fit both homophilic and heterophilic graphs. Empirical validations on benchmarks for homophilic, heterophilic graphs, and long-term graph datasets show that GNNs enhanced by our method significantly outperform their original counterparts.

Lequan Lin, Dai Shi, Andi Han et al.

Traffic forecasting, a crucial application of spatio-temporal graph (STG) learning, has traditionally relied on deterministic models for accurate point estimations. Yet, these models fall short of quantifying future uncertainties. Recently, many probabilistic methods, especially variants of diffusion models, have been proposed to fill this gap. However, existing diffusion methods typically deal with individual sensors separately when generating future time series, resulting in limited usage of spatial information in the probabilistic learning process. In this work, we propose SpecSTG, a novel spectral diffusion framework, to better leverage spatial dependencies and systematic patterns inherent in traffic data. More specifically, our method generates the Fourier representation of future time series, transforming the learning process into the spectral domain enriched with spatial information. Additionally, our approach incorporates a fast spectral graph convolution designed for Fourier input, alleviating the computational burden associated with existing models. Compared with state-of-the-arts, SpecSTG achieves up to 8% improvements on point estimations and up to 0.78% improvements on quantifying future uncertainties. Furthermore, SpecSTG's training and validation speed is 3.33X of the most efficient existing diffusion method for STG forecasting. The source code for SpecSTG is available at https://anonymous.4open.science/r/SpecSTG.

Dai Shi, Zhiqi Shao, Yi Guo et al.

This paper presents a comprehensive theoretical analysis of the graph p-Laplacian regularized framelet network (pL-UFG) to establish a solid understanding of its properties. We conduct a convergence analysis on pL-UFG, addressing the gap in the understanding of its asymptotic behaviors. Further by investigating the generalized Dirichlet energy of pL-UFG, we demonstrate that the Dirichlet energy remains non-zero throughout convergence, ensuring the avoidance of over-smoothing issues. Additionally, we elucidate the energy dynamic perspective, highlighting the synergistic relationship between the implicit layer in pL-UFG and graph framelets. This synergy enhances the model's adaptability to both homophilic and heterophilic data. Notably, we reveal that pL-UFG can be interpreted as a generalized non-linear diffusion process, thereby bridging the gap between pL-UFG and differential equations on the graph. Importantly, these multifaceted analyses lead to unified conclusions that offer novel insights for understanding and implementing pL-UFG, as well as other graph neural network (GNN) models. Finally, based on our dynamic analysis, we propose two novel pL-UFG models with manually controlled energy dynamics. We demonstrate empirically and theoretically that our proposed models not only inherit the advantages of pL-UFG but also significantly reduce computational costs for training on large-scale graph datasets.

Mengxi Yang, Dai Shi, Xuebin Zheng et al.

This paper aims to provide a novel design of a multiscale framelet convolution for spectral graph neural networks (GNNs). While current spectral methods excel in various graph learning tasks, they often lack the flexibility to adapt to noisy, incomplete, or perturbed graph signals, making them fragile in such conditions. Our newly proposed framelet convolution addresses these limitations by decomposing graph data into low-pass and high-pass spectra through a finely-tuned multiscale approach. Our approach directly designs filtering functions within the spectral domain, allowing for precise control over the spectral components. The proposed design excels in filtering out unwanted spectral information and significantly reduces the adverse effects of noisy graph signals. Our approach not only enhances the robustness of GNNs but also preserves crucial graph features and structures. Through extensive experiments on diverse, real-world graph datasets, we demonstrate that our framelet convolution achieves superior performance in node classification tasks. It exhibits remarkable resilience to noisy data and adversarial attacks, highlighting its potential as a robust solution for real-world graph applications. This advancement opens new avenues for more adaptive and reliable spectral GNN architectures.

Dai Shi, Andi Han, Yi Guo et al.

Dimensionality reduction (DR) and manifold learning (ManL) have been applied extensively in many machine learning tasks, including signal processing, speech recognition, and neuroinformatics. However, the understanding of whether DR and ManL models can generate valid learning results remains unclear. In this work, we investigate the validity of learning results of some widely used DR and ManL methods through the chart mapping function of a manifold. We identify a fundamental problem of these methods: the mapping functions induced by these methods violate the basic settings of manifolds, and hence they are not learning manifold in the mathematical sense. To address this problem, we provide a provably correct algorithm called fixed points Laplacian mapping (FPLM), that has the geometric guarantee to find a valid manifold representation (up to a homeomorphism). Combining one additional condition(orientation preserving), we discuss a sufficient condition for an algorithm to be bijective for any d-simplex decomposition result on a d-manifold. However, constructing such a mapping function and its computational method satisfying these conditions is still an open problem in mathematics.

Dai Shi, Junbin Gao, Xia Hong et al.

Optimal transport (OT) is a powerful tool for measuring the distance between two defined probability distributions. In this paper, we develop a new manifold named the coupling matrix manifold (CMM), where each point on CMM can be regarded as the transportation plan of the OT problem. We firstly explore the Riemannian geometry of CMM with the metric expressed by the Fisher information. These geometrical features of CMM have paved the way for developing numerical Riemannian optimization algorithms such as Riemannian gradient descent and Riemannian trust-region algorithms, forming a uniform optimization method for all types of OT problems. The proposed method is then applied to solve several OT problems studied by previous literature. The results of the numerical experiments illustrate that the optimization algorithms that are based on the method proposed in this paper are comparable to the classic ones, for example, the Sinkhorn algorithm, while outperforming other state-of-the-art algorithms without considering the geometry information, especially in the case of non-entropy optimal transport.