Michael Mayo

Hongyu Wang, Eibe Frank, Bernhard Pfahringer et al.

Cross-domain few-shot learning (CDFSL) addresses learning problems where knowledge needs to be transferred from one or more source domains into an instance-scarce target domain with an explicitly different distribution. Recently published CDFSL methods generally construct a universal model that combines knowledge of multiple source domains into one feature extractor. This enables efficient inference but necessitates re-computation of the extractor whenever a new source domain is added. Some of these methods are also incompatible with heterogeneous source domain extractor architectures. We propose feature extractor stacking (FES), a new CDFSL method for combining information from a collection of extractors, that can utilise heterogeneous pretrained extractors out of the box and does not maintain a universal model that needs to be re-computed when its extractor collection is updated. We present the basic FES algorithm, which is inspired by the classic stacked generalisation approach, and also introduce two variants: convolutional FES (ConFES) and regularised FES (ReFES). Given a target-domain task, these algorithms fine-tune each extractor independently, use cross-validation to extract training data for stacked generalisation from the support set, and learn a simple linear stacking classifier from this data. We evaluate our FES methods on the well-known Meta-Dataset benchmark, targeting image classification with convolutional neural networks, and show that they can achieve state-of-the-art performance.

Mackenzie J. Meni, Ryan T. White, Michael Mayo et al.

Neural networks have dramatically increased our capacity to learn from large, high-dimensional datasets across innumerable disciplines. However, their decisions are not easily interpretable, their computational costs are high, and building and training them are not straightforward processes. To add structure to these efforts, we derive new mathematical results to efficiently measure the changes in entropy as fully-connected and convolutional neural networks process data. By measuring the change in entropy as networks process data effectively, patterns critical to a well-performing network can be visualized and identified. Entropy-based loss terms are developed to improve dense and convolutional model accuracy and efficiency by promoting the ideal entropy patterns. Experiments in image compression, image classification, and image segmentation on benchmark datasets demonstrate these losses guide neural networks to learn rich latent data representations in fewer dimensions, converge in fewer training epochs, and achieve higher accuracy.

Vithya Yogarajan, Michael Mayo, Bernhard Pfahringer

Use of medical data, also known as electronic health records, in research helps develop and advance medical science. However, protecting patient confidentiality and identity while using medical data for analysis is crucial. Medical data can be in the form of tabular structures (i.e. tables), free-form narratives, and images. This study focuses on medical data in the free form longitudinal text. De-identification of electronic health records provides the opportunity to use such data for research without it affecting patient privacy, and avoids the need for individual patient consent. In recent years there is increasing interest in developing an accurate, robust and adaptable automatic de-identification system for electronic health records. This is mainly due to the dilemma between the availability of an abundance of health data, and the inability to use such data in research due to legal and ethical restrictions. De-identification tracks in competitions such as the 2014 i2b2 UTHealth and the 2016 CEGS N-GRID shared tasks have provided a great platform to advance this area. The primary reasons for this include the open source nature of the dataset and the fact that raw psychiatric data were used for 2016 competitions. This study focuses on noticeable trend changes in the techniques used in the development of automatic de-identification for longitudinal clinical narratives. More specifically, the shift from using conditional random fields (CRF) based systems only or rules (regular expressions, dictionary or combinations) based systems only, to hybrid models (combining CRF and rules), and more recently to deep learning based systems. We review the literature and results that arose from the 2014 and the 2016 competitions and discuss the outcomes of these systems. We also provide a list of research questions that emerged from this survey.

Victoria Huang, Shaleeza Sohail, Michael Mayo et al.

Federated learning (FL), as an emerging artificial intelligence (AI) approach, enables decentralized model training across multiple devices without exposing their local training data. FL has been increasingly gaining popularity in both academia and industry. While research works have been proposed to improve the fault tolerance of FL, the real impact of unreliable devices (e.g., dropping out, misconfiguration, poor data quality) in real-world applications is not fully investigated. We carefully chose two representative, real-world classification problems with a limited numbers of clients to better analyze FL fault tolerance. Contrary to the intuition, simple FL algorithms can perform surprisingly well in the presence of unreliable clients.

Vithya Yogarajan, Bernhard Pfahringer, Michael Mayo

De-identification of electronic health records (EHR) is a vital step towards advancing health informatics research and maximising the use of available data. It is a two-step process where step one is the identification of protected health information (PHI), and step two is replacing such PHI with surrogates. Despite the recent advances in automatic de-identification of EHR, significant obstacles remain if the abundant health data available are to be used to the full potential. Accuracy in de-identification could be considered a necessary, but not sufficient condition for the use of EHR without individual patient consent. We present here a comprehensive review of the progress to date, both the impressive successes in achieving high accuracy and the significant risks and challenges that remain. To best of our knowledge, this is the first paper to present a complete picture of end-to-end automatic de-identification. We review 18 recently published automatic de-identification systems -designed to de-identify EHR in the form of free text- to show the advancements made in improving the overall accuracy of the system, and in identifying individual PHI. We argue that despite the improvements in accuracy there remain challenges in surrogate generation and replacements of identified PHIs, and the risks posed to patient protection and privacy.

Maisa Doaud, Michael Mayo

Autoencoders learn data representations through reconstruction. Robust training is the key factor affecting the quality of the learned representations and, consequently, the accuracy of the application that use them. Previous works suggested methods for deciding the optimal autoencoder configuration which allows for robust training. Nevertheless, improving the accuracy of a trained autoencoder has got limited, if no, attention. We propose a new approach that improves the accuracy of a trained autoencoders results and answers the following question, Given a trained autoencoder, a test image, and using a real-parameter optimizer, can we generate better quality reconstructed image version than the one generated by the autoencoder?. Our proposed approach combines both the decoder part of a trained Resitricted Boltman Machine-based autoencoder with the Competitive Swarm Optimization algorithm. Experiments show that it is possible to reconstruct images using trained decoder from randomly initialized representations. Results also show that our approach reconstructed better quality images than the autoencoder in most of the test cases. Indicating that, we can use the approach for improving the performance of a pre-trained autoencoder if it does not give satisfactory results.

Michael Mayo, Eibe Frank

Can we evolve better training data for machine learning algorithms? To investigate this question we use population-based optimisation algorithms to generate artificial surrogate training data for naive Bayes for regression. We demonstrate that the generalisation performance of naive Bayes for regression models is enhanced by training them on the artificial data as opposed to the real data. These results are important for two reasons. Firstly, naive Bayes models are simple and interpretable but frequently underperform compared to more complex "black box" models, and therefore new methods of enhancing accuracy are called for. Secondly, the idea of using the real training data indirectly in the construction of the artificial training data, as opposed to directly for model training, is a novel twist on the usual machine learning paradigm.