Haotian Zheng

Chen Li, Haotian Zheng, Yiping Sun et al.

In the realm of computational knowledge representation, Knowledge Graph Reasoning (KG-R) stands at the forefront of facilitating sophisticated inferential capabilities across multifarious domains. The quintessence of this research elucidates the employment of reinforcement learning (RL) strategies, notably the REINFORCE algorithm, to navigate the intricacies inherent in multi-hop KG-R. This investigation critically addresses the prevalent challenges introduced by the inherent incompleteness of Knowledge Graphs (KGs), which frequently results in erroneous inferential outcomes, manifesting as both false negatives and misleading positives. By partitioning the Unified Medical Language System (UMLS) benchmark dataset into rich and sparse subsets, we investigate the efficacy of pre-trained BERT embeddings and Prompt Learning methodologies to refine the reward shaping process. This approach not only enhances the precision of multi-hop KG-R but also sets a new precedent for future research in the field, aiming to improve the robustness and accuracy of knowledge inference within complex KG frameworks. Our work contributes a novel perspective to the discourse on KG reasoning, offering a methodological advancement that aligns with the academic rigor and scholarly aspirations of the Natural journal, promising to invigorate further advancements in the realm of computational knowledge representation.

Yanlin Zhou, Kai Tan, Xinyu Shen et al.

Proteins are essential for life, and their structure determines their function. The protein secondary structure is formed by the folding of the protein primary structure, and the protein tertiary structure is formed by the bending and folding of the secondary structure. Therefore, the study of protein secondary structure is very helpful to the overall understanding of protein structure. Although the accuracy of protein secondary structure prediction has continuously improved with the development of machine learning and deep learning, progress in the field of protein structure prediction, unfortunately, remains insufficient to meet the large demand for protein information. Therefore, based on the advantages of deep learning-based methods in feature extraction and learning ability, this paper adopts a two-dimensional fusion deep neural network model, DstruCCN, which uses Convolutional Neural Networks (CCN) and a supervised Transformer protein language model for single-sequence protein structure prediction. The training features of the two are combined to predict the protein Transformer binding site matrix, and then the three-dimensional structure is reconstructed using energy minimization.