Chuyun Shen

Chuyun Shen, Wenhao Li, Yuhang Shi et al.

Interactive medical image segmentation (IMIS) has shown significant potential in enhancing segmentation accuracy by integrating iterative feedback from medical professionals. However, the limited availability of enough 3D medical data restricts the generalization and robustness of most IMIS methods. The Segment Anything Model (SAM), though effective for 2D images, requires expensive semi-auto slice-by-slice annotations for 3D medical images. In this paper, we explore the zero-shot capabilities of SAM 2, the next-generation Meta SAM model trained on videos, for 3D medical image segmentation. By treating sequential 2D slices of 3D images as video frames, SAM 2 can fully automatically propagate annotations from a single frame to the entire 3D volume. We propose a practical pipeline for using SAM 2 in 3D medical image segmentation and present key findings highlighting its efficiency and potential for further optimization. Concretely, numerical experiments on the BraTS2020 and the medical segmentation decathlon datasets demonstrate that SAM 2 still has a gap with supervised methods but can narrow the gap in specific settings and organ types, significantly reducing the annotation burden on medical professionals. Our code will be open-sourced and available at https://github.com/Chuyun-Shen/SAM_2_Medical_3D.

Beibei Xu, Yutong Ye, Chuyun Shen et al.

Although agentic workflows have demonstrated strong potential for solving complex tasks, existing automated generation methods remain inefficient and underperform, as they rely on predefined operator libraries and homogeneous LLM-only workflows in which all task-level computation is performed through probabilistic inference. To address these limitations, we propose HyEvo, an automated workflow-generation framework that leverages heterogeneous atomic synthesis. HyEvo integrates probabilistic LLM nodes for semantic reasoning with deterministic code nodes for rule-based execution, offloading predictable operations from LLM inference and reducing inference cost and execution latency. To efficiently navigate the hybrid search space, HyEvo employs an LLM-driven multi-island evolutionary strategy with a reflect-then-generate mechanism, iteratively refining both workflow topology and node logic via execution feedback. Comprehensive experiments show that HyEvo consistently outperforms existing methods across diverse reasoning and coding benchmarks, while reducing inference cost and execution latency by up to 19$\times$ and 16$\times$, respectively, compared to the state-of-the-art open-source baseline.

Chuyun Shen, Wenhao Li, Ya Zhang et al.

The Segmentation Anything Model (SAM) has recently emerged as a foundation model for addressing image segmentation. Owing to the intrinsic complexity of medical images and the high annotation cost, the medical image segmentation (MIS) community has been encouraged to investigate SAM's zero-shot capabilities to facilitate automatic annotation. Inspired by the extraordinary accomplishments of interactive medical image segmentation (IMIS) paradigm, this paper focuses on assessing the potential of SAM's zero-shot capabilities within the IMIS paradigm to amplify its benefits in the MIS domain. Regrettably, we observe that SAM's vulnerability to prompt forms (e.g., points, bounding boxes) becomes notably pronounced in IMIS. This leads us to develop a framework that adaptively offers suitable prompt forms for human experts. We refer to the framework above as temporally-extended prompts optimization (TEPO) and model it as a Markov decision process, solvable through reinforcement learning. Numerical experiments on the standardized benchmark BraTS2020 demonstrate that the learned TEPO agent can further enhance SAM's zero-shot capability in the MIS context.

Jiehao Wu, Zixiao Huang, Wenhao Li et al.

AscendC (Ascend C) operator optimization on Huawei Ascend neural processing units (NPUs) faces a two-fold knowledge bottleneck: unlike the CUDA ecosystem, there are few public reference implementations to learn from, and performance hinges on a coupled two-part artifact - a host-side tiling program that orchestrates data movement and a kernel program that schedules and pipelines instructions. We present AscendOptimizer, an episodic agent that bootstraps this missing expertise by turning execution into experience. On the host side, AscendOptimizer performs profiling-in-the-loop evolutionary search to discover valid and high-performing tiling and data-movement configurations directly from hardware feedback. On the kernel side, it mines transferable optimization motifs by rewinding optimized kernels - systematically de-optimizing them to synthesize instructive "bad-to-good" trajectories - and distills these motifs into a retrievable experience bank for guided rewriting. By alternating host tuning and kernel rewriting in a closed loop, AscendOptimizer steadily expands feasibility and pushes latency down. On a benchmark of 127 real AscendC operators, AscendOptimizer achieves a 1.19x geometric-mean speedup over the open-source baseline, with 49.61% of operators outperforming their references, outperforming strong agent and search baselines.

Jiayi Liu, Qiaoyi Xue, Youdan Feng et al.

The escalating global cancer burden underscores the critical need for precise diagnostic tools in oncology. This research employs deep learning to enhance lesion segmentation in PET/CT imaging, utilizing a dataset of 900 whole-body FDG-PET/CT and 600 PSMA-PET/CT studies from the AutoPET challenge III. Our methodical approach includes robust preprocessing and data augmentation techniques to ensure model robustness and generalizability. We investigate the influence of non-zero normalization and modifications to the data augmentation pipeline, such as the introduction of RandGaussianSharpen and adjustments to the Gamma transform parameter. This study aims to contribute to the standardization of preprocessing and augmentation strategies in PET/CT imaging, potentially improving the diagnostic accuracy and the personalized management of cancer patients. Our code will be open-sourced and available at https://github.com/jiayiliu-pku/DC2024.

Qiaoyi Xue, Youdan Feng, Jiayi Liu et al.

This study explores a workflow for automated segmentation of lesions in FDG and PSMA PET/CT images. Due to the substantial differences in image characteristics between FDG and PSMA, specialized preprocessing steps are required. Utilizing YOLOv8 for data classification, the FDG and PSMA images are preprocessed separately before feeding them into the segmentation models, aiming to improve lesion segmentation accuracy. The study focuses on evaluating the performance of automated segmentation workflow for multitracer PET images. The findings are expected to provide critical insights for enhancing diagnostic workflows and patient-specific treatment plans. Our code will be open-sourced and available at https://github.com/jiayiliu-pku/AP2024.

Yuchen He, Chuyun Shen, Xiangfeng Wang et al.

Federated continual learning (FCL) aims to learn from sequential data stream in the decentralized federated learning setting, while simultaneously mitigating the catastrophic forgetting issue in classical continual learning. Existing FCL methods usually employ typical rehearsal mechanisms, which could result in privacy violations or additional onerous storage and computational burdens. In this work, an efficient and non-IID robust federated continual learning framework, called Federated Prototype-Augmented Prompt Learning (FPPL), is proposed. The FPPL can collaboratively learn lightweight prompts augmented by prototypes without rehearsal. On the client side, a fusion function is employed to fully leverage the knowledge contained in task-specific prompts for alleviating catastrophic forgetting. Additionally, global prototypes aggregated from the server are used to obtain unified representation through contrastive learning, mitigating the impact of non-IID-derived data heterogeneity. On the server side, locally uploaded prototypes are utilized to perform debiasing on the classifier, further alleviating the performance degradation caused by both non-IID and catastrophic forgetting. Empirical evaluations demonstrate the effectiveness of FPPL, achieving notable performance with an efficient design while remaining robust to diverse non-IID degrees. Code is available at: https://github.com/ycheoo/FPPL.

Wenhao Li, Wenwu Li, Chuyun Shen et al.

We present TextAtari, a benchmark for evaluating language agents on very long-horizon decision-making tasks spanning up to 100,000 steps. By translating the visual state representations of classic Atari games into rich textual descriptions, TextAtari creates a challenging test bed that bridges sequential decision-making with natural language processing. The benchmark includes nearly 100 distinct tasks with varying complexity, action spaces, and planning horizons, all rendered as text through an unsupervised representation learning framework (AtariARI). We evaluate three open-source large language models (Qwen2.5-7B, Gemma-7B, and Llama3.1-8B) across three agent frameworks (zero-shot, few-shot chain-of-thought, and reflection reasoning) to assess how different forms of prior knowledge affect performance on these long-horizon challenges. Four scenarios-Basic, Obscured, Manual Augmentation, and Reference-based-investigate the impact of semantic understanding, instruction comprehension, and expert demonstrations on agent decision-making. Our results reveal significant performance gaps between language agents and human players in extensive planning tasks, highlighting challenges in sequential reasoning, state tracking, and strategic planning across tens of thousands of steps. TextAtari provides standardized evaluation protocols, baseline implementations, and a framework for advancing research at the intersection of language models and planning. Our code is available at https://github.com/Lww007/Text-Atari-Agents.

Junjie Sheng, Zixiao Huang, Chuyun Shen et al.

The formidable capacity for zero- or few-shot decision-making in language agents encourages us to pose a compelling question: Can language agents be alternatives to PPO agents in traditional sequential decision-making tasks? To investigate this, we first take environments collected in OpenAI Gym as our testbeds and ground them to textual environments that construct the TextGym simulator. This allows for straightforward and efficient comparisons between PPO agents and language agents, given the widespread adoption of OpenAI Gym. To ensure a fair and effective benchmarking, we introduce $5$ levels of scenario for accurate domain-knowledge controlling and a unified RL-inspired framework for language agents. Additionally, we propose an innovative explore-exploit-guided language (EXE) agent to solve tasks within TextGym. Through numerical experiments and ablation studies, we extract valuable insights into the decision-making capabilities of language agents and make a preliminary evaluation of their potential to be alternatives to PPO in classical sequential decision-making problems. This paper sheds light on the performance of language agents and paves the way for future research in this exciting domain. Our code is publicly available at~\url{https://github.com/mail-ecnu/Text-Gym-Agents}.

Zixiao Huang, Lifeng Guo, Wenhao Li et al.

Graph combinatorial optimization (GCO) problems are central to domains like logistics and bioinformatics. While traditional solvers dominate, large language models (LLMs) offer new possibilities for structured reasoning, yet struggle with complex GCO tasks requiring rigorous combinatorial analysis and multi-step deduction, often producing hallucinated steps. We first formalize the Optimal Thoughts Design (OTD) problem, which provides a structured guidance for producing high-quality intermediate reasoning steps. Building on this formulation, we introduce GraphThought, a novel framework that generates effective reasoning sequences through either heuristic-guided forward search or solver-aligned backward reasoning. By fine-tuning LLMs on these structured thought sequences, we develop Llama-GT, an 8B-parameter model that achieves state-of-the-art performance on the GraphArena benchmark, outperforming significantly larger models like DeepSeek-V3. Our results demonstrate that when scaffolded with structured reasoning priors, principled thought generation can significantly enhance LLM performance on GCO tasks without requiring increased model scale.

Chuyun Shen, Wenhao Li, Haoqing Chen et al.

Radiologists must utilize multiple modal images for tumor segmentation and diagnosis due to the limitations of medical imaging and the diversity of tumor signals. This leads to the development of multimodal learning in segmentation. However, the redundancy among modalities creates challenges for existing subtraction-based joint learning methods, such as misjudging the importance of modalities, ignoring specific modal information, and increasing cognitive load. These thorny issues ultimately decrease segmentation accuracy and increase the risk of overfitting. This paper presents the complementary information mutual learning (CIML) framework, which can mathematically model and address the negative impact of inter-modal redundant information. CIML adopts the idea of addition and removes inter-modal redundant information through inductive bias-driven task decomposition and message passing-based redundancy filtering. CIML first decomposes the multimodal segmentation task into multiple subtasks based on expert prior knowledge, minimizing the information dependence between modalities. Furthermore, CIML introduces a scheme in which each modality can extract information from other modalities additively through message passing. To achieve non-redundancy of extracted information, the redundant filtering is transformed into complementary information learning inspired by the variational information bottleneck. The complementary information learning procedure can be efficiently solved by variational inference and cross-modal spatial attention. Numerical results from the verification task and standard benchmarks indicate that CIML efficiently removes redundant information between modalities, outperforming SOTA methods regarding validation accuracy and segmentation effect.

Xidong Yang, Wenhao Li, Junjie Sheng et al.

Reinforcement learning (RL) has driven breakthroughs in AI, from game-play to scientific discovery and AI alignment. However, its broader applicability remains limited by challenges such as low data efficiency and poor generalizability. Recent advances suggest that large language models, with their rich world knowledge and reasoning capabilities, could complement RL by enabling semantic state modeling and task-agnostic planning. In this work, we propose the Agentic Episodic Control (AEC), a novel architecture that integrates RL with LLMs to enhance decision-making. The AEC can leverage a large language model (LLM) to map the observations into language-grounded embeddings, which further can be stored in an episodic memory for rapid retrieval of high-value experiences. Simultaneously, a World-Graph working memory module is utilized to capture structured environmental dynamics in order to enhance relational reasoning. Furthermore, a lightweight critical state detector dynamically arbitrates between the episodic memory recall and the world-model-guided exploration. On the whole, by combining the trial-and-error learning scheme with LLM-derived semantic priors, the proposed AEC can improve both data efficiency and generalizability in reinforcement learning. In experiments on BabyAI-Text benchmark tasks, AEC demonstrates substantial improvements over existing baselines, especially on complex and generalization tasks like FindObj, where it outperforms the best baseline by up to 76%. The proposed AEC framework bridges the strengths of numeric reinforcement learning and symbolic reasoning, which provides a pathway toward more adaptable and sample-efficient agents.

Wenhao Li, Qisen Xu, Chuyun Shen et al.

Medical image segmentation is one of the fundamental problems for artificial intelligence-based clinical decision systems. Current automatic medical image segmentation methods are often failed to meet clinical requirements. As such, a series of interactive segmentation algorithms are proposed to utilize expert correction information. However, existing methods suffer from some segmentation refining failure problems after long-term interactions and some cost problems from expert annotation, which hinder clinical applications. This paper proposes an interactive segmentation framework, called interactive MEdical segmentation with self-adaptive Confidence CAlibration (MECCA), by introducing the corrective action evaluation, which combines the action-based confidence learning and multi-agent reinforcement learning (MARL). The evaluation is established through a novel action-based confidence network, and the corrective actions are obtained from MARL. Based on the confidential information, a self-adaptive reward function is designed to provide more detailed feedback, and a simulated label generation mechanism is proposed on unsupervised data to reduce over-reliance on labeled data. Experimental results on various medical image datasets have shown the significant performance of the proposed algorithm.