Yu Mi

Yuren Mao, Yuhang Ge, Yijiang Fan et al.

Low-Rank Adaptation~(LoRA), which updates the dense neural network layers with pluggable low-rank matrices, is one of the best performed parameter efficient fine-tuning paradigms. Furthermore, it has significant advantages in cross-task generalization and privacy-preserving. Hence, LoRA has gained much attention recently, and the number of related literature demonstrates exponential growth. It is necessary to conduct a comprehensive overview of the current progress on LoRA. This survey categorizes and reviews the progress from the perspectives of (1) downstream adaptation improving variants that improve LoRA's performance on downstream tasks; (2) cross-task generalization methods that mix multiple LoRA plugins to achieve cross-task generalization; (3) efficiency-improving methods that boost the computation-efficiency of LoRA; (4) data privacy-preserving methods that use LoRA in federated learning; (5) application. Besides, this survey also discusses the future directions in this field. At last, we provide a Github page~\footnote{\href{https://github.com/ZJU-LLMs/Awesome-LoRAs.git}{https://github.com/ZJU-LLMs/Awesome-LoRAs.git}} for readers to check the updates and initiate discussions on this survey paper.

Yifan Zhu, Yu Mi, Yue Lu et al.

Multimodal Retrieval-Augmented Generation (RAG) has emerged as an effective paradigm for enhancing Large Language Models (LLMs) with external knowledge. However, existing multimodal RAG systems predominantly rely on coarse-grained page-level retrieval, which fails to capture fine-grained semantic and layout structures in visually rich documents, thereby compromising retrieval accuracy and leading to redundant context in downstream tasks. To address these issues, we propose Layout-oriented Fine-grained Retrieval-Augmented Generation (LFRAG), a novel framework that advances multimodal RAG from page-level to block-level retrieval. We perform layout segmentation to construct semantically coherent fine-grained retrieval units and design a semantic-layout fusion encoder that integrates local semantics with global context via cross-attention. With block-level late interaction retrieval, LFRAG enables precise query-content alignment and reduces irrelevant content for downstream generation. To enable rigorous evaluation, we construct LFDocQA, a large-scale benchmark with block-level annotations spanning diverse document types, designed to assess both multimodal document retrieval and question answering with greater granularity than existing datasets. Extensive experiments on LFDocQA demonstrate that LFRAG achieves state-of-the-art performance on retrieval tasks, outperforms the best baseline by 7.20% in answer accuracy, and reduces token consumption by 73.07% in generation tasks, confirming LFRAG as an accurate and efficient framework for multimodal RAG over visually rich documents. Our code and datasets will be released soon.

Yuren Mao, Yu Mi, Peigen Liu et al.

Cell type annotation is critical for understanding cellular heterogeneity. Based on single-cell RNA-seq data and deep learning models, good progress has been made in annotating a fixed number of cell types within a specific tissue. However, universal cell annotation, which can generalize across tissues, discover novel cell types, and extend to novel cell types, remains less explored. To fill this gap, this paper proposes scAgent, a universal cell annotation framework based on Large Language Models (LLMs). scAgent can identify cell types and discover novel cell types in diverse tissues; furthermore, it is data efficient to learn novel cell types. Experimental studies in 160 cell types and 35 tissues demonstrate the superior performance of scAgent in general cell-type annotation, novel cell discovery, and extensibility to novel cell type.

Chao Zhang, Yuren Mao, Yijiang Fan et al.

Text-to-SQL, which provides zero-code interface for operating relational databases, has gained much attention in financial analysis; because, financial professionals may not well-skilled in SQL programming. However, until now, there is no practical Text-to-SQL benchmark dataset for financial analysis, and existing Text-to-SQL methods have not considered the unique characteristics of databases in financial applications, such as commonly existing wide tables. To address these issues, we collect a practical Text-to-SQL benchmark dataset and propose a model-agnostic Large Language Model (LLMs)-based Text-to-SQL framework for financial analysis. The benchmark dataset, BULL, is collected from the practical financial analysis business of Hundsun Technologies Inc., including databases for fund, stock, and macro economy. Besides, the proposed LLMs-based Text-to-SQL framework, FinSQL, provides a systematic treatment for financial Text-to-SQL from the perspectives of prompt construction, parameter-efficient fine-tuning and output calibration. Extensive experimental results on BULL demonstrate that FinSQL achieves the state-of-the-art Text-to-SQL performance at a small cost; furthermore, FinSQL can bring up to 36.64% performance improvement in scenarios requiring few-shot cross-database model transfer.