1.2NADec 12, 2016
Behavior of different numerical schemes for population genetic drift problemsMinxin Chen, Chun Liu, Shixin Xu et al.
In this paper, we focus on numerical methods for the genetic drift problems, which is governed by a degenerated convection-dominated parabolic equation. Due to the degeneration and convection, Dirac singularities will always be developed at boundary points as time evolves. In order to find a \emph{complete solution} which should keep the conservation of total probability and expectation, three different schemes based on finite volume methods are used to solve the equation numerically: one is a upwind scheme, the other two are different central schemes. We observed that all the methods are stable and can keep the total probability, but have totally different long-time behaviors concerning with the conservation of expectation. We prove that any extra infinitesimal diffusion leads to a same artificial steady state. So upwind scheme does not work due to its intrinsic numerical viscosity. We find one of the central schemes introduces a numerical viscosity term too, which is beyond the common understanding in the convection-diffusion community. Careful analysis is presented to prove that the other central scheme does work. Our study shows that the numerical methods should be carefully chosen and any method with intrinsic numerical viscosity must be avoided.
Approximating Signed Distance Fields of Implicit Surfaces with Sparse Ellipsoidal Radial Basis Function NetworksBobo Lian, Dandan Wang, Chenjian Wu et al.
Accurate and compact representation of signed distance functions (SDFs) of implicit surfaces is crucial for efficient storage, computation, and downstream processing of 3D geometry. In this work, we propose a general learning method for approximating precomputed SDF fields of implicit surfaces by a relatively small number of ellipsoidal radial basis functions (ERBFs). The SDF values could be computed from various sources, including point clouds, triangle meshes, analytical expressions, pretrained neural networks, etc. Given SDF values on spatial grid points, our method approximates the SDF using as few ERBFs as possible, achieving a compact representation while preserving the geometric shape of the corresponding implicit surface. To balance sparsity and approximation precision, we introduce a dynamic multi-objective optimization strategy, which adaptively incorporates regularization to enforce sparsity and jointly optimizes the weights, centers, shapes, and orientations of the ERBFs. For computational efficiency, a nearest-neighbor-based data structure restricts computations to points near each kernel center, and CUDA-based parallelism further accelerates the optimization. Furthermore, a hierarchical refinement strategy based on SDF spatial grid points progressively incorporates coarse-to-fine samples for parameter initialization and optimization, improving convergence and training efficiency. Extensive experiments on multiple benchmark datasets demonstrate that our method can represent SDF fields with significantly fewer parameters than existing sparse implicit representation approaches, achieving better accuracy, robustness, and computational efficiency. The corresponding executable program is publicly available at https://github.com/lianbobo/SE-RBFNet.git
5.1NASep 1, 2023
Solving multiscale elliptic problems by sparse radial basis function neural networksZhiwen Wang, Minxin Chen, Jingrun Chen
Machine learning has been successfully applied to various fields of scientific computing in recent years. In this work, we propose a sparse radial basis function neural network method to solve elliptic partial differential equations (PDEs) with multiscale coefficients. Inspired by the deep mixed residual method, we rewrite the second-order problem into a first-order system and employ multiple radial basis function neural networks (RBFNNs) to approximate unknown functions in the system. To aviod the overfitting due to the simplicity of RBFNN, an additional regularization is introduced in the loss function. Thus the loss function contains two parts: the $L_2$ loss for the residual of the first-order system and boundary conditions, and the $\ell_1$ regularization term for the weights of radial basis functions (RBFs). An algorithm for optimizing the specific loss function is introduced to accelerate the training process. The accuracy and effectiveness of the proposed method are demonstrated through a collection of multiscale problems with scale separation, discontinuity and multiple scales from one to three dimensions. Notably, the $\ell_1$ regularization can achieve the goal of representing the solution by fewer RBFs. As a consequence, the total number of RBFs scales like $\mathcal{O}(\varepsilon^{-nτ})$, where $\varepsilon$ is the smallest scale, $n$ is the dimensionality, and $τ$ is typically smaller than $1$. It is worth mentioning that the proposed method not only has the numerical convergence and thus provides a reliable numerical solution in three dimensions when a classical method is typically not affordable, but also outperforms most other available machine learning methods in terms of accuracy and robustness.
3.7IVDec 12, 2018
Image Segmentation Based on Multiscale Fast Spectral ClusteringChongyang Zhang, Guofeng Zhu, Minxin Chen et al.
In recent years, spectral clustering has become one of the most popular clustering algorithms for image segmentation. However, it has restricted applicability to large-scale images due to its high computational complexity. In this paper, we first propose a novel algorithm called Fast Spectral Clustering based on quad-tree decomposition. The algorithm focuses on the spectral clustering at superpixel level and its computational complexity is O(nlogn) + O(m) + O(m^(3/2)); its memory cost is O(m), where n and m are the numbers of pixels and the superpixels of a image. Then we propose Multiscale Fast Spectral Clustering by improving Fast Spectral Clustering, which is based on the hierarchical structure of the quad-tree. The computational complexity of Multiscale Fast Spectral Clustering is O(nlogn) and its memory cost is O(m). Extensive experiments on real large-scale images demonstrate that Multiscale Fast Spectral Clustering outperforms Normalized cut in terms of lower computational complexity and memory cost, with comparable clustering accuracy.