M$^3$Care: Learning with Missing Modalities in Multimodal Healthcare DataChaohe Zhang, Xu Chu, Liantao Ma et al.
Multimodal electronic health record (EHR) data are widely used in clinical applications. Conventional methods usually assume that each sample (patient) is associated with the unified observed modalities, and all modalities are available for each sample. However, missing modality caused by various clinical and social reasons is a common issue in real-world clinical scenarios. Existing methods mostly rely on solving a generative model that learns a mapping from the latent space to the original input space, which is an unstable ill-posed inverse problem. To relieve the underdetermined system, we propose a model solving a direct problem, dubbed learning with Missing Modalities in Multimodal healthcare data (M3Care). M3Care is an end-to-end model compensating the missing information of the patients with missing modalities to perform clinical analysis. Instead of generating raw missing data, M3Care imputes the task-related information of the missing modalities in the latent space by the auxiliary information from each patient's similar neighbors, measured by a task-guided modality-adaptive similarity metric, and thence conducts the clinical tasks. The task-guided modality-adaptive similarity metric utilizes the uncensored modalities of the patient and the other patients who also have the same uncensored modalities to find similar patients. Experiments on real-world datasets show that M3Care outperforms the state-of-the-art baselines. Moreover, the findings discovered by M3Care are consistent with experts and medical knowledge, demonstrating the capability and the potential of providing useful insights and explanations.
3.3SPJul 19, 2023
Self-Supervised Learning for WiFi CSI-Based Human Activity Recognition: A Systematic StudyKe Xu, Jiangtao Wang, Hongyuan Zhu et al.
Recently, with the advancement of the Internet of Things (IoT), WiFi CSI-based HAR has gained increasing attention from academic and industry communities. By integrating the deep learning technology with CSI-based HAR, researchers achieve state-of-the-art performance without the need of expert knowledge. However, the scarcity of labeled CSI data remains the most prominent challenge when applying deep learning models in the context of CSI-based HAR due to the privacy and incomprehensibility of CSI-based HAR data. On the other hand, SSL has emerged as a promising approach for learning meaningful representations from data without heavy reliance on labeled examples. Therefore, considerable efforts have been made to address the challenge of insufficient data in deep learning by leveraging SSL algorithms. In this paper, we undertake a comprehensive inventory and analysis of the potential held by different categories of SSL algorithms, including those that have been previously studied and those that have not yet been explored, within the field. We provide an in-depth investigation of SSL algorithms in the context of WiFi CSI-based HAR. We evaluate four categories of SSL algorithms using three publicly available CSI HAR datasets, each encompassing different tasks and environmental settings. To ensure relevance to real-world applications, we design performance metrics that align with specific requirements. Furthermore, our experimental findings uncover several limitations and blind spots in existing work, highlighting the barriers that need to be addressed before SSL can be effectively deployed in real-world WiFi-based HAR applications. Our results also serve as a practical guideline for industry practitioners and provide valuable insights for future research endeavors in this field.
Predict and Interpret Health Risk using EHR through Typical PatientsZhihao Yu, Chaohe Zhang, Yasha Wang et al.
Predicting health risks from electronic health records (EHR) is a topic of recent interest. Deep learning models have achieved success by modeling temporal and feature interaction. However, these methods learn insufficient representations and lead to poor performance when it comes to patients with few visits or sparse records. Inspired by the fact that doctors may compare the patient with typical patients and make decisions from similar cases, we propose a Progressive Prototypical Network (PPN) to select typical patients as prototypes and utilize their information to enhance the representation of the given patient. In particular, a progressive prototype memory and two prototype separation losses are proposed to update prototypes. Besides, a novel integration is introduced for better fusing information from patients and prototypes. Experiments on three real-world datasets demonstrate that our model brings improvement on all metrics. To make our results better understood by physicians, we developed an application at http://ppn.ai-care.top. Our code is released at https://github.com/yzhHoward/PPN.
5.0CVNov 25, 2023
OpenNet: Incremental Learning for Autonomous Driving Object Detection with Balanced LossZezhou Wang, Guitao Cao, Xidong Xi et al.
Automated driving object detection has always been a challenging task in computer vision due to environmental uncertainties. These uncertainties include significant differences in object sizes and encountering the class unseen. It may result in poor performance when traditional object detection models are directly applied to automated driving detection. Because they usually presume fixed categories of common traffic participants, such as pedestrians and cars. Worsely, the huge class imbalance between common and novel classes further exacerbates performance degradation. To address the issues stated, we propose OpenNet to moderate the class imbalance with the Balanced Loss, which is based on Cross Entropy Loss. Besides, we adopt an inductive layer based on gradient reshaping to fast learn new classes with limited samples during incremental learning. To against catastrophic forgetting, we employ normalized feature distillation. By the way, we improve multi-scale detection robustness and unknown class recognition through FPN and energy-based detection, respectively. The Experimental results upon the CODA dataset show that the proposed method can obtain better performance than that of the existing methods.
Scaling Image Tokenizers with Grouped Spherical QuantizationJiangtao Wang, Zhen Qin, Yifan Zhang et al.
Vision tokenizers have gained a lot of attraction due to their scalability and compactness; previous works depend on old-school GAN-based hyperparameters, biased comparisons, and a lack of comprehensive analysis of the scaling behaviours. To tackle those issues, we introduce Grouped Spherical Quantization (GSQ), featuring spherical codebook initialization and lookup regularization to constrain codebook latent to a spherical surface. Our empirical analysis of image tokenizer training strategies demonstrates that GSQ-GAN achieves superior reconstruction quality over state-of-the-art methods with fewer training iterations, providing a solid foundation for scaling studies. Building on this, we systematically examine the scaling behaviours of GSQ, specifically in latent dimensionality, codebook size, and compression ratios, and their impact on model performance. Our findings reveal distinct behaviours at high and low spatial compression levels, underscoring challenges in representing high-dimensional latent spaces. We show that GSQ can restructure high-dimensional latent into compact, low-dimensional spaces, thus enabling efficient scaling with improved quality. As a result, GSQ-GAN achieves a 16x down-sampling with a reconstruction FID (rFID) of 0.50.
14.4LGOct 4, 2025
Optimal Scaling Needs Optimal NormOleg Filatov, Jiangtao Wang, Jan Ebert et al.
Despite recent progress in optimal hyperparameter transfer under model and dataset scaling, no unifying explanatory principle has been established. Using the Scion optimizer, we discover that joint optimal scaling across model and dataset sizes is governed by a single invariant: the operator norm of the output layer. Across models with up to 1.3B parameters trained on up to 138B tokens, the optimal learning rate/batch size pair $(η^{\ast}, B^{\ast})$ consistently has the same operator norm value - a phenomenon we term norm transfer. This constant norm condition is necessary but not sufficient: while for each dataset size, multiple $(η, B)$ reach the optimal norm, only a unique $(η^{\ast}, B^{\ast})$ achieves the best loss. As a sufficient condition, we provide the first measurement of $(η^{\ast}, B^{\ast})$ scaling with dataset size for Scion, and find that the scaling rules are consistent with those of the Adam optimizer. Tuning per-layer-group learning rates also improves model performance, with the output layer being the most sensitive and hidden layers benefiting from lower learning rates. We provide practical insights on norm-guided optimal scaling and release our Distributed Scion (Disco) implementation with logs from over two thousand runs to support research on LLM training dynamics at scale.
Data Pruning in Generative Diffusion ModelsRania Briq, Jiangtao Wang, Stefan Kesselheim
Data pruning is the problem of identifying a core subset that is most beneficial to training and discarding the remainder. While pruning strategies are well studied for discriminative models like those used in classification, little research has gone into their application to generative models. Generative models aim to estimate the underlying distribution of the data, so presumably they should benefit from larger datasets. In this work we aim to shed light on the accuracy of this statement, specifically answer the question of whether data pruning for generative diffusion models could have a positive impact. Contrary to intuition, we show that eliminating redundant or noisy data in large datasets is beneficial particularly when done strategically. We experiment with several pruning methods including recent-state-of-art methods, and evaluate over CelebA-HQ and ImageNet datasets. We demonstrate that a simple clustering method outperforms other sophisticated and computationally demanding methods. We further exhibit how we can leverage clustering to balance skewed datasets in an unsupervised manner to allow fair sampling for underrepresented populations in the data distribution, which is a crucial problem in generative models.
10.0HCFeb 21, 2022
Human-in-the-loop Machine Learning: A Macro-Micro PerspectiveJiangtao Wang, Bin Guo, Liming Chen
Though technical advance of artificial intelligence and machine learning has enabled many promising intelligent systems, many computing tasks are still not able to be fully accomplished by machine intelligence. Motivated by the complementary nature of human and machine intelligence, an emerging trend is to involve humans in the loop of machine learning and decision-making. In this paper, we provide a macro-micro review of human-in-the-loop machine learning. We first describe major machine learning challenges which can be addressed by human intervention in the loop. Then we examine closely the latest research and findings of introducing humans into each step of the lifecycle of machine learning. Finally, we analyze current research gaps and point out future research directions.
Interpretable Machine Learning for COVID-19: An Empirical Study on Severity Prediction TaskHan Wu, Wenjie Ruan, Jiangtao Wang et al.
The black-box nature of machine learning models hinders the deployment of some high-accuracy models in medical diagnosis. It is risky to put one's life in the hands of models that medical researchers do not fully understand. However, through model interpretation, black-box models can promptly reveal significant biomarkers that medical practitioners may have overlooked due to the surge of infected patients in the COVID-19 pandemic. This research leverages a database of 92 patients with confirmed SARS-CoV-2 laboratory tests between 18th Jan. 2020 and 5th Mar. 2020, in Zhuhai, China, to identify biomarkers indicative of severity prediction. Through the interpretation of four machine learning models, decision tree, random forests, gradient boosted trees, and neural networks using permutation feature importance, Partial Dependence Plot (PDP), Individual Conditional Expectation (ICE), Accumulated Local Effects (ALE), Local Interpretable Model-agnostic Explanations (LIME), and Shapley Additive Explanation (SHAP), we identify an increase in N-Terminal pro-Brain Natriuretic Peptide (NTproBNP), C-Reaction Protein (CRP), and lactic dehydrogenase (LDH), a decrease in lymphocyte (LYM) is associated with severe infection and an increased risk of death, which is consistent with recent medical research on COVID-19 and other research using dedicated models. We further validate our methods on a large open dataset with 5644 confirmed patients from the Hospital Israelita Albert Einstein, at São Paulo, Brazil from Kaggle, and unveil leukocytes, eosinophils, and platelets as three indicative biomarkers for COVID-19.
CovidCare: Transferring Knowledge from Existing EMR to Emerging Epidemic for Interpretable PrognosisLiantao Ma, Xinyu Ma, Junyi Gao et al.
Due to the characteristics of COVID-19, the epidemic develops rapidly and overwhelms health service systems worldwide. Many patients suffer from systemic life-threatening problems and need to be carefully monitored in ICUs. Thus the intelligent prognosis is in an urgent need to assist physicians to take an early intervention, prevent the adverse outcome, and optimize the medical resource allocation. However, in the early stage of the epidemic outbreak, the data available for analysis is limited due to the lack of effective diagnostic mechanisms, rarity of the cases, and privacy concerns. In this paper, we propose a deep-learning-based approach, CovidCare, which leverages the existing electronic medical records to enhance the prognosis for inpatients with emerging infectious diseases. It learns to embed the COVID-19-related medical features based on massive existing EMR data via transfer learning. The transferred parameters are further trained to imitate the teacher model's representation behavior based on knowledge distillation, which embeds the health status more comprehensively in the source dataset. We conduct the length of stay prediction experiments for patients on a real-world COVID-19 dataset. The experiment results indicate that our proposed model consistently outperforms the comparative baseline methods. CovidCare also reveals that, 1) hs-cTnI, hs-CRP and Platelet Counts are the most fatal biomarkers, whose abnormal values usually indicate emergency adverse outcome. 2) Normal values of gamma-GT, AP and eGFR indicate the overall improvement of health. The medical findings extracted by CovidCare are empirically confirmed by human experts and medical literatures.
AdaCare: Explainable Clinical Health Status Representation Learning via Scale-Adaptive Feature Extraction and RecalibrationLiantao Ma, Junyi Gao, Yasha Wang et al.
Deep learning-based health status representation learning and clinical prediction have raised much research interest in recent years. Existing models have shown superior performance, but there are still several major issues that have not been fully taken into consideration. First, the historical variation pattern of the biomarker in diverse time scales plays a vital role in indicating the health status, but it has not been explicitly extracted by existing works. Second, key factors that strongly indicate the health risk are different among patients. It is still challenging to adaptively make use of the features for patients in diverse conditions. Third, using prediction models as the black box will limit the reliability in clinical practice. However, none of the existing works can provide satisfying interpretability and meanwhile achieve high prediction performance. In this work, we develop a general health status representation learning model, named AdaCare. It can capture the long and short-term variations of biomarkers as clinical features to depict the health status in multiple time scales. It also models the correlation between clinical features to enhance the ones which strongly indicate the health status and thus can maintain a state-of-the-art performance in terms of prediction accuracy while providing qualitative interpretability. We conduct a health risk prediction experiment on two real-world datasets. Experiment results indicate that AdaCare outperforms state-of-the-art approaches and provides effective interpretability, which is verifiable by clinical experts.
1.5LGNov 1, 2018
Multi-Label Robust Factorization Autoencoder and its Application in Predicting Drug-Drug InteractionsXu Chu, Yang Lin, Jingyue Gao et al.
Drug-drug interactions (DDIs) are a major cause of preventable hospitalizations and deaths. Predicting the occurrence of DDIs helps drug safety professionals allocate investigative resources and take appropriate regulatory action promptly. Traditional DDI prediction methods predict DDIs based on the similarity between drugs. Recently, researchers revealed that predictive performance can be improved by better modeling the interactions between drug pairs with bilinear forms. However, the shallow models leveraging bilinear forms suffer from limitations on capturing complicated nonlinear interactions between drug pairs. To this end, we propose Multi-Label Robust Factorization Autoencoder (abbreviated to MuLFA) for DDI prediction, which learns a representation of interactions between drug pairs and has the capability of characterizing complicated nonlinear interactions more precisely. Moreover, a novel loss called CuXCov is designed to effectively learn the parameters of MuLFA. Furthermore, the decoder is able to generate high-risk chemical structures of drug pairs for specific DDIs, assisting pharmacists to better understand the relationship between drug chemistry and DDI. Experimental results on real-world datasets demonstrate that MuLFA consistently outperforms state-of-the-art methods; particularly, it increases 21:3% predictive performance compared to the best baseline for top 50 frequent DDIs.We also illustrate various case studies to demonstrate the efficacy of the chemical structures generated by MuLFA in DDI diagnosis.
2.3SIMay 22, 2018
Social-Network-Assisted Worker Recruitment in Mobile Crowd SensingJiangtao Wang, Feng Wang, Yasha Wang et al.
Worker recruitment is a crucial research problem in Mobile Crowd Sensing (MCS). While previous studies rely on a specified platform with a pre-assumed large user pool, this paper leverages the influenced propagation on the social network to assist the MCS worker recruitment. We first select a subset of users on the social network as initial seeds and push MCS tasks to them. Then, influenced users who accept tasks are recruited as workers, and the ultimate goal is to maximize the coverage. Specifically, to select a near-optimal set of seeds, we propose two algorithms, named Basic-Selector and Fast-Selector, respectively. Basic-Selector adopts an iterative greedy process based on the predicted mobility, which has good performance but suffers from inefficiency concerns. To accelerate the selection, Fast-Selector is proposed, which is based on the interdependency of geographical positions among friends. Empirical studies on two real-world datasets verify that Fast-Selector achieves higher coverage than baseline methods under various settings, meanwhile, it is much more efficient than Basic-Selector while only sacrificing a slight fraction of the coverage.
5.4HCMay 22, 2018
HyTasker: Hybrid Task Allocation in Mobile Crowd SensingJiangtao Wang, Feng Wang, Yasha Wang et al.
Task allocation is a major challenge in Mobile Crowd Sensing (MCS). While previous task allocation approaches follow either the opportunistic or participatory mode, this paper proposes to integrate these two complementary modes in a two-phased hybrid framework called HyTasker. In the offline phase, a group of workers (called opportunistic workers) are selected, and they complete MCS tasks during their daily routines (i.e., opportunistic mode). In the online phase, we assign another set of workers (called participatory workers) and require them to move specifically to perform tasks that are not completed by the opportunistic workers (i.e., participatory mode). Instead of considering these two phases separately, HyTasker jointly optimizes them with a total incentive budget constraint. In particular, when selecting opportunistic workers in the offline phase of HyTasker, we propose a novel algorithm that simultaneously considers the predicted task assignment for the participatory workers, in which the density and mobility of participatory workers are taken into account. Experiments on a real-world mobility dataset demonstrate that HyTasker outperforms other methods with more completed tasks under the same budget constraint.
3.0HCMay 22, 2018
Crowd-Powered Sensing and Actuation in Smart Cities: Current Issues and Future DirectionsJiangtao Wang, Yasha Wang, Daqing Zhang et al.
With the advent of seamless connection of human, machine, and smart things, there is an emerging trend to leverage the power of crowds (e.g., citizens, mobile devices, and smart things) to monitor what is happening in a city, understand how the city is evolving, and further take actions to enable better quality of life, which is referred to as Crowd-Powered Smart City (CPSC). In this article, we provide a literature review for CPSC and identify future research opportunities. Specifically, we first define the concepts with typical CPSC applications. Then, we present the main characteristics of CPSC and further highlight the research issues. In the end, we point out existing limitations which can inform and guide future research directions.
7.3HCMay 22, 2018
Task Allocation in Mobile Crowd Sensing: State of the Art and Future OpportunitiesJiangtao Wang, Leye Wang, Yasha Wang et al.
Mobile Crowd Sensing (MCS) is the special case of crowdsourcing, which leverages the smartphones with various embedded sensors and user's mobility to sense diverse phenomenon in a city. Task allocation is a fundamental research issue in MCS, which is crucial for the efficiency and effectiveness of MCS applications. In this article, we specifically focus on the task allocation in MCS systems. We first present the unique features of MCS allocation compared to generic crowdsourcing, and then provide a comprehensive review for diversifying problem formulation and allocation algorithms together with future research opportunities.