Yeye He

Peng Li, Yeye He, Cong Yan et al.

Relational tables, where each row corresponds to an entity and each column corresponds to an attribute, have been the standard for tables in relational databases. However, such a standard cannot be taken for granted when dealing with tables "in the wild". Our survey of real spreadsheet-tables and web-tables shows that over 30% of such tables do not conform to the relational standard, for which complex table-restructuring transformations are needed before these tables can be queried easily using SQL-based analytics tools. Unfortunately, the required transformations are non-trivial to program, which has become a substantial pain point for technical and non-technical users alike, as evidenced by large numbers of forum questions in places like StackOverflow and Excel/Power-BI/Tableau forums. We develop an Auto-Tables system that can automatically synthesize pipelines with multi-step transformations (in Python or other languages), to transform non-relational tables into standard relational forms for downstream analytics, obviating the need for users to manually program transformations. We compile an extensive benchmark for this new task, by collecting 244 real test cases from user spreadsheets and online forums. Our evaluation suggests that Auto-Tables can successfully synthesize transformations for over 70% of test cases at interactive speeds, without requiring any input from users, making this an effective tool for both technical and non-technical users to prepare data for analytics.

Dezhan Tu, Yeye He, Weiwei Cui et al.

Data pipelines are widely employed in modern enterprises to power a variety of Machine-Learning (ML) and Business-Intelligence (BI) applications. Crucially, these pipelines are \emph{recurring} (e.g., daily or hourly) in production settings to keep data updated so that ML models can be re-trained regularly, and BI dashboards refreshed frequently. However, data quality (DQ) issues can often creep into recurring pipelines because of upstream schema and data drift over time. As modern enterprises operate thousands of recurring pipelines, today data engineers have to spend substantial efforts to \emph{manually} monitor and resolve DQ issues, as part of their DataOps and MLOps practices. Given the high human cost of managing large-scale pipeline operations, it is imperative that we can \emph{automate} as much as possible. In this work, we propose Auto-Validate-by-History (AVH) that can automatically detect DQ issues in recurring pipelines, leveraging rich statistics from historical executions. We formalize this as an optimization problem, and develop constant-factor approximation algorithms with provable precision guarantees. Extensive evaluations using 2000 production data pipelines at Microsoft demonstrate the effectiveness and efficiency of AVH.

Bangrui Xu, Qihang Yao, Zirui Tang et al.

Semi-structured documents integrate diverse interleaved data elements (e.g., tables, charts, hierarchical paragraphs) arranged in various and often irregular layouts. These documents are widely observed across domains and account for a large portion of real-world data. However, existing methods struggle to support natural language question answering over these documents due to three main technical challenges: (1) The elements extracted by techniques like OCR are often fragmented and stripped of their original semantic context, making them inadequate for analysis. (2) Existing approaches lack effective representations to capture hierarchical structures within documents (e.g., associating tables with nested chapter titles) and to preserve layout-specific distinctions (e.g., differentiating sidebars from main content). (3) Answering questions often requires retrieving and aligning relevant information scattered across multiple regions or pages, such as linking a descriptive paragraph to table cells located elsewhere in the document. To address these issues, we propose MoDora, an LLM-powered system for semi-structured document analysis. First, we adopt a local-alignment aggregation strategy to convert OCR-parsed elements into layout-aware components, and conduct type-specific information extraction for components with hierarchical titles or non-text elements. Second, we design the Component-Correlation Tree (CCTree) to hierarchically organize components, explicitly modeling inter-component relations and layout distinctions through a bottom-up cascade summarization process. Finally, we propose a question-type-aware retrieval strategy that supports (1) layout-based grid partitioning for location-based retrieval and (2) LLM-guided pruning for semantic-based retrieval. Experiments show MoDora outperforms baselines by 5.97%-61.07% in accuracy. The code is at https://github.com/weAIDB/MoDora.

Wei Zhou, Jun Zhou, Haoyu Wang et al. · mit

Data preparation aims to denoise raw datasets, uncover cross-dataset relationships, and extract valuable insights from them, which is essential for a wide range of data-centric applications. Driven by (i) rising demands for application-ready data (e.g., for analytics, visualization, decision-making), (ii) increasingly powerful LLM techniques, and (iii) the emergence of infrastructures that facilitate flexible agent construction (e.g., using Databricks Unity Catalog), LLM-enhanced methods are rapidly becoming a transformative and potentially dominant paradigm for data preparation. By investigating hundreds of recent literature works, this paper presents a systematic review of this evolving landscape, focusing on the use of LLM techniques to prepare data for diverse downstream tasks. First, we characterize the fundamental paradigm shift, from rule-based, model-specific pipelines to prompt-driven, context-aware, and agentic preparation workflows. Next, we introduce a task-centric taxonomy that organizes the field into three major tasks: data cleaning (e.g., standardization, error processing, imputation), data integration (e.g., entity matching, schema matching), and data enrichment (e.g., data annotation, profiling). For each task, we survey representative techniques, and highlight their respective strengths (e.g., improved generalization, semantic understanding) and limitations (e.g., the prohibitive cost of scaling LLMs, persistent hallucinations even in advanced agents, the mismatch between advanced methods and weak evaluation). Moreover, we analyze commonly used datasets and evaluation metrics (the empirical part). Finally, we discuss open research challenges and outline a forward-looking roadmap that emphasizes scalable LLM-data systems, principled designs for reliable agentic workflows, and robust evaluation protocols.

Peng Li, Yeye He, Dror Yashar et al.

Language models, such as GPT-3.5 and ChatGPT, demonstrate remarkable abilities to follow diverse human instructions and perform a wide range of tasks. However, when probing language models using a range of basic table-understanding tasks, we observe that today's language models are still sub-optimal in many table-related tasks, likely because they are pre-trained predominantly on \emph{one-dimensional} natural-language texts, whereas relational tables are \emph{two-dimensional} objects. In this work, we propose a new "\emph{table-tuning}" paradigm, where we continue to train/fine-tune language models like GPT-3.5 and ChatGPT, using diverse table-tasks synthesized from real tables as training data, with the goal of enhancing language models' ability to understand tables and perform table tasks. We show that our resulting Table-GPT models demonstrate (1) better \emph{table-understanding} capabilities, by consistently outperforming the vanilla GPT-3.5 and ChatGPT, on a wide-range of table tasks, including holdout unseen tasks, and (2) strong \emph{generalizability}, in its ability to respond to diverse human instructions to perform new table-tasks, in a manner similar to GPT-3.5 and ChatGPT.

Haoyu Dong, Jianbo Zhao, Yuzhang Tian et al.

Spreadsheets are characterized by their extensive two-dimensional grids, flexible layouts, and varied formatting options, which pose significant challenges for large language models (LLMs). In response, we introduce SpreadsheetLLM, pioneering an efficient encoding method designed to unleash and optimize LLMs' powerful understanding and reasoning capability on spreadsheets. Initially, we propose a vanilla serialization approach that incorporates cell addresses, values, and formats. However, this approach was limited by LLMs' token constraints, making it impractical for most applications. To tackle this challenge, we develop SheetCompressor, an innovative encoding framework that compresses spreadsheets effectively for LLMs. It comprises three modules: structural-anchor-based compression, inverse index translation, and data-format-aware aggregation. It significantly improves performance in the spreadsheet table detection task, outperforming the vanilla approach by 25.6% in GPT4's in-context learning setting. Moreover, fine-tuned LLM with SheetCompressor has an average compression ratio of 25 times, and achieves a state-of-the-art 78.9% F1 score, surpassing the best existing models by 12.3%. Finally, we propose Chain of Spreadsheet for downstream tasks of spreadsheet understanding and validate it in a new and demanding spreadsheet QA task. We methodically leverage the inherent layout and structure of spreadsheets, demonstrating that SpreadsheetLLM is highly effective across a variety of spreadsheet tasks.

Renzhi Wu, Alexander Bendeck, Xu Chu et al.

Entity matching (EM) refers to the problem of identifying pairs of data records in one or more relational tables that refer to the same entity in the real world. Supervised machine learning (ML) models currently achieve state-of-the-art matching performance; however, they require many labeled examples, which are often expensive or infeasible to obtain. This has inspired us to approach data labeling for EM using weak supervision. In particular, we use the labeling function abstraction popularized by Snorkel, where each labeling function (LF) is a user-provided program that can generate many noisy match/non-match labels quickly and cheaply. Given a set of user-written LFs, the quality of data labeling depends on a labeling model to accurately infer the ground-truth labels. In this work, we first propose a simple but powerful labeling model for general weak supervision tasks. Then, we tailor the labeling model specifically to the task of entity matching by considering the EM-specific transitivity property. The general form of our labeling model is simple while substantially outperforming the best existing method across ten general weak supervision datasets. To tailor the labeling model for EM, we formulate an approach to ensure that the final predictions of the labeling model satisfy the transitivity property required in EM, utilizing an exact solution where possible and an ML-based approximation in remaining cases. On two single-table and nine two-table real-world EM datasets, we show that our labeling model results in a 9% higher F1 score on average than the best existing method. We also show that a deep learning EM end model (DeepMatcher) trained on labels generated from our weak supervision approach is comparable to an end model trained using tens of thousands of ground-truth labels, demonstrating that our approach can significantly reduce the labeling efforts required in EM.

Sibei Chen, Yeye He, Weiwei Cui et al.

Spreadsheets are widely recognized as the most popular end-user programming tools, which blend the power of formula-based computation, with an intuitive table-based interface. Today, spreadsheets are used by billions of users to manipulate tables, most of whom are neither database experts nor professional programmers. Despite the success of spreadsheets, authoring complex formulas remains challenging, as non-technical users need to look up and understand non-trivial formula syntax. To address this pain point, we leverage the observation that there is often an abundance of similar-looking spreadsheets in the same organization, which not only have similar data, but also share similar computation logic encoded as formulas. We develop an Auto-Formula system that can accurately predict formulas that users want to author in a target spreadsheet cell, by learning and adapting formulas that already exist in similar spreadsheets, using contrastive-learning techniques inspired by "similar-face recognition" from compute vision. Extensive evaluations on over 2K test formulas extracted from real enterprise spreadsheets show the effectiveness of Auto-Formula over alternatives. Our benchmark data is available at https://github.com/microsoft/Auto-Formula to facilitate future research.

Lingjiao Chen, Chi Zhang, Yeye He et al.

Developers and consumers increasingly choose reasoning language models (RLMs) based on their listed API prices. However, how accurately do these prices reflect actual inference costs? We conduct the first systematic study of this question, evaluating 8 frontier RLMs across 9 diverse tasks covering competition math, science QA, code generation, and multi-domain reasoning. We uncover the pricing reversal phenomenon: in 21.8% of model-pair comparisons, the model with a lower listed price actually incurs a higher total cost, with reversal magnitude reaching up to 28x. For example, Gemini 3 Flash's listed price is 78% cheaper than GPT-5.2's, yet its actual cost across all tasks is 22% higher. We trace the root cause to vast heterogeneity in thinking token consumption: on the same query, one model may use 900% more thinking tokens than another. In fact, removing thinking token costs reduces ranking reversals by 70% and raises the rank correlation (Kendall's $τ$ ) between price and cost rankings from 0.563 to 0.873. We further show that per-query cost prediction is fundamentally difficult: repeated runs of the same query yield thinking token variation up to 9.7x, establishing an irreducible noise floor for any predictor. Our findings demonstrate that listed API pricing is an unreliable proxy for actual cost, calling for cost-aware model selection and transparent per-request cost monitoring.

Tianji Cong, Yuanyuan Tian, Andreas Mueller et al.

Automatically inferring join relationships is a critical task for effective data discovery, integration, querying and reuse. However, accurately and efficiently identifying these relationships in large and complex schemas can be challenging, especially in enterprise settings where access to data values is constrained. In this paper, we introduce the problem of join graph inference when only metadata is available. We conduct an empirical study on a large number of real-world schemas and observe that join graphs when represented as adjacency matrices exhibit two key properties: high sparsity and low-rank structure. Based on these novel observations, we formulate join graph inference as a low-rank matrix completion problem and propose Nexus, an end-to-end solution using only metadata. To further enhance accuracy, we propose a novel Expectation-Maximization algorithm that alternates between low-rank matrix completion and refining join candidate probabilities by leveraging Large Language Models. Our extensive experiments demonstrate that Nexus outperforms existing methods by a significant margin on four datasets including a real-world production dataset. Additionally, Nexus can operate in a fast mode, providing comparable results with up to 6x speedup, offering a practical and efficient solution for real-world deployments.

Muzhi Chen, Xuanhe Zhou, Wei Zhou et al.

This paper envisions a quantum database (Qute) that treats quantum computation as a first-class execution option. Unlike prior simulation-based methods that either run quantum algorithms on classical machines or adapt existing databases for quantum simulation, Qute instead (i) compiles an extended form of SQL into gate-efficient quantum circuits, (ii) employs a hybrid optimizer to dynamically select between quantum and classical execution plans, (iii) introduces selective quantum indexing, and (iv) designs fidelity-preserving storage to mitigate current qubit constraints. We also present a three-stage evolution roadmap toward quantum-native database. Finally, by deploying Qute on a real quantum processor (origin_wukong), we show that it outperforms a classical baseline at scale, and we release an open-source prototype at https://github.com/weAIDB/Qute.

Junjie Xing, Yeye He, Mengyu Zhou et al.

In this work, we propose Table-LLM-Specialist, or Table-Specialist for short, as a new self-trained fine-tuning paradigm specifically designed for table tasks. Our insight is that for each table task, there often exist two dual versions of the same task, one generative and one classification in nature. Leveraging their duality, we propose a Generator-Validator paradigm, to iteratively generate-then-validate training data from language-models, to fine-tune stronger \sys models that can specialize in a given task, without requiring manually-labeled data. Our extensive evaluations suggest that our Table-Specialist has (1) \textit{strong performance} on diverse table tasks over vanilla language-models -- for example, Table-Specialist fine-tuned on GPT-3.5 not only outperforms vanilla GPT-3.5, but can often match or surpass GPT-4 level quality, (2) \textit{lower cost} to deploy, because when Table-Specialist fine-tuned on GPT-3.5 achieve GPT-4 level quality, it becomes possible to deploy smaller models with lower latency and inference cost, with comparable quality, and (3) \textit{better generalizability} when evaluated across multiple benchmarks, since \sys is fine-tuned on a broad range of training data systematically generated from diverse real tables. Our code and data will be available at https://github.com/microsoft/Table-LLM-Specialist.

Junjie Xing, Yeye He, Mengyu Zhou et al.

Tables and table-based use cases play a crucial role in many important real-world applications, such as spreadsheets, databases, and computational notebooks, which traditionally require expert-level users like data engineers, data analysts, and database administrators to operate. Although LLMs have shown remarkable progress in working with tables (e.g., in spreadsheet and database copilot scenarios), comprehensive benchmarking of such capabilities remains limited. In contrast to an extensive and growing list of NLP benchmarks, evaluations of table-related tasks are scarce, and narrowly focus on tasks like NL-to-SQL and Table-QA, overlooking the broader spectrum of real-world tasks that professional users face. This gap limits our understanding and model progress in this important area. In this work, we introduce MMTU, a large-scale benchmark with over 30K questions across 25 real-world table tasks, designed to comprehensively evaluate models ability to understand, reason, and manipulate real tables at the expert-level. These tasks are drawn from decades' worth of computer science research on tabular data, with a focus on complex table tasks faced by professional users. We show that MMTU require a combination of skills -- including table understanding, reasoning, and coding -- that remain challenging for today's frontier models, where even frontier reasoning models like OpenAI o4-mini and DeepSeek R1 score only around 60%, suggesting significant room for improvement. We highlight key findings in our evaluation using MMTU and hope that this benchmark drives further advances in understanding and developing foundation models for structured data processing and analysis. Our code and data are available at https://github.com/MMTU-Benchmark/MMTU and https://huggingface.co/datasets/MMTU-benchmark/MMTU.

Qixu Chen, Yeye He, Raymond Chi-Wing Wong et al.

Data cleaning is a long-standing challenge in data management. While powerful logic and statistical algorithms have been developed to detect and repair data errors in tables, existing algorithms predominantly rely on domain-experts to first manually specify data-quality constraints specific to a given table, before data cleaning algorithms can be applied. In this work, we propose a new class of data-quality constraints that we call Semantic-Domain Constraints, which can be reliably inferred and automatically applied to any tables, without requiring domain-experts to manually specify on a per-table basis. We develop a principled framework to systematically learn such constraints from table corpora using large-scale statistical tests, which can further be distilled into a core set of constraints using our optimization framework, with provable quality guarantees. Extensive evaluations show that this new class of constraints can be used to both (1) directly detect errors on real tables in the wild, and (2) augment existing expert-driven data-cleaning techniques as a new class of complementary constraints. Our extensively labeled benchmark dataset with 2400 real data columns, as well as our code are available at https://github.com/qixuchen/AutoTest to facilitate future research.

Zirui Tang, Weizheng Wang, Zihang Zhou et al.

Large language models (LLMs) and agent techniques have brought a fundamental shift in the functionality and development paradigm of data analysis tasks (a.k.a LLM/Agent-as-Data-Analyst), demonstrating substantial impact across both academia and industry. In comparison with traditional rule or small-model based approaches, (agentic) LLMs enable complex data understanding, natural language interfaces, semantic analysis functions, and autonomous pipeline orchestration. From a modality perspective, we review LLM-based techniques for (i) structured data (e.g., NL2SQL, NL2GQL, ModelQA), (ii) semi-structured data (e.g., markup languages understanding, semi-structured table question answering), (iii) unstructured data (e.g., chart understanding, text/image document understanding), and (iv) heterogeneous data (e.g., data retrieval and modality alignment in data lakes). The technical evolution further distills four key design goals for intelligent data analysis agents, namely semantic-aware design, autonomous pipelines, tool-augmented workflows, and support for open-world tasks. Finally, we outline the remaining challenges and propose several insights and practical directions for advancing LLM/Agent-powered data analysis.

Xinyi He, Yihao Liu, Mengyu Zhou et al.

Tabular data are crucial in many fields and their understanding by large language models (LLMs) under high parameter efficiency paradigm is important. However, directly applying parameter-efficient fine-tuning (PEFT) techniques to tabular tasks presents significant challenges, particularly in terms of better table serialization and the representation of two-dimensional structured information within a one-dimensional sequence. To address this, we propose TableLoRA, a module designed to improve LLMs' understanding of table structure during PEFT. It incorporates special tokens for serializing tables with special token encoder and uses 2D LoRA to encode low-rank information on cell positions. Experiments on four tabular-related datasets demonstrate that TableLoRA consistently outperforms vanilla LoRA and surpasses various table encoding methods tested in control experiments. These findings reveal that TableLoRA, as a table-specific LoRA, enhances the ability of LLMs to process tabular data effectively, especially in low-parameter settings, demonstrating its potential as a robust solution for handling table-related tasks.

Shuocheng Li, Yihao Liu, Silin Du et al.

Large language models (LLMs) have shown great promise in automating data science workflows, but existing models still struggle with multi-step reasoning and tool use, which limits their effectiveness on complex data analysis tasks. To address this, we propose a scalable pipeline that extracts high-quality, tool-based data analysis tasks and their executable multi-step solutions from real-world Jupyter notebooks and associated data files. Using this pipeline, we introduce NbQA, a large-scale dataset of standardized task-solution pairs that reflect authentic tool-use patterns in practical data science scenarios. To further enhance multi-step reasoning, we present Jupiter, a framework that formulates data analysis as a search problem and applies Monte Carlo Tree Search (MCTS) to generate diverse solution trajectories for value model learning. During inference, Jupiter combines the value model and node visit counts to efficiently collect executable multi-step plans with minimal search steps. Experimental results show that Qwen2.5-7B and 14B-Instruct models on NbQA solve 77.82% and 86.38% of tasks on InfiAgent-DABench, respectively-matching or surpassing GPT-4o and advanced agent frameworks. Further evaluations demonstrate improved generalization and stronger tool-use reasoning across diverse multi-step reasoning tasks.

Yeye He, Jie Song, Yue Wang et al.

As data lakes become increasingly popular in large enterprises today, there is a growing need to tag or classify data assets (e.g., files and databases) in data lakes with additional metadata (e.g., semantic column-types), as the inferred metadata can enable a range of downstream applications like data governance (e.g., GDPR compliance), and dataset search. Given the sheer size of today's enterprise data lakes with petabytes of data and millions of data assets, it is imperative that data assets can be ``auto-tagged'', using lightweight inference algorithms and minimal user input. In this work, we develop Auto-Tag, a corpus-driven approach that automates data-tagging of \textit{custom} data types in enterprise data lakes. Using Auto-Tag, users only need to provide \textit{one} example column to demonstrate the desired data-type to tag. Leveraging an index structure built offline using a lightweight scan of the data lake, which is analogous to pre-training in machine learning, Auto-Tag can infer suitable data patterns to best ``describe'' the underlying ``domain'' of the given column at an interactive speed, which can then be used to tag additional data of the same ``type'' in data lakes. The Auto-Tag approach can adapt to custom data-types, and is shown to be both accurate and efficient. Part of Auto-Tag ships as a ``custom-classification'' feature in a cloud-based data governance and catalog solution \textit{Azure Purview}.

Junwen Yang, Yeye He, Surajit Chaudhuri

Recent work has made significant progress in helping users to automate single data preparation steps, such as string-transformations and table-manipulation operators (e.g., Join, GroupBy, Pivot, etc.). We in this work propose to automate multiple such steps end-to-end, by synthesizing complex data pipelines with both string transformations and table-manipulation operators. We propose a novel "by-target" paradigm that allows users to easily specify the desired pipeline, which is a significant departure from the traditional by-example paradigm. Using by-target, users would provide input tables (e.g., csv or json files), and point us to a "target table" (e.g., an existing database table or BI dashboard) to demonstrate how the output from the desired pipeline would schematically "look like". While the problem is seemingly underspecified, our unique insight is that implicit table constraints such as FDs and keys can be exploited to significantly constrain the space to make the problem tractable. We develop an Auto-Pipeline system that learns to synthesize pipelines using reinforcement learning and search. Experiments on large numbers of real pipelines crawled from GitHub suggest that Auto-Pipeline can successfully synthesize 60-70% of these complex pipelines with up to 10 steps.

Renzhi Wu, Prem Sakala, Peng Li et al.

Entity matching (EM) refers to the problem of identifying tuple pairs in one or more relations that refer to the same real world entities. Supervised machine learning (ML) approaches, and deep learning based approaches in particular, typically achieve state-of-the-art matching results. However, these approaches require many labeled examples, in the form of matching and non-matching pairs, which are expensive and time-consuming to label. In this paper, we introduce Panda, a weakly supervised system specifically designed for EM. Panda uses the same labeling function abstraction as Snorkel, where labeling functions (LF) are user-provided programs that can generate large amounts of (somewhat noisy) labels quickly and cheaply, which can then be combined via a labeling model to generate accurate final predictions. To support users developing LFs for EM, Panda provides an integrated development environment (IDE) that lives in a modern browser architecture. Panda's IDE facilitates the development, debugging, and life-cycle management of LFs in the context of EM tasks, similar to how IDEs such as Visual Studio or Eclipse excel in general-purpose programming. Panda's IDE includes many novel features purpose-built for EM, such as smart data sampling, a builtin library of EM utility functions, automatically generated LFs, visual debugging of LFs, and finally, an EM-specific labeling model. We show in this demo that Panda IDE can greatly accelerate the development of high-quality EM solutions using weak supervision.

Jie Song, Yeye He

Complex data pipelines are increasingly common in diverse applications such as BI reporting and ML modeling. These pipelines often recur regularly (e.g., daily or weekly), as BI reports need to be refreshed, and ML models need to be retrained. However, it is widely reported that in complex production pipelines, upstream data feeds can change in unexpected ways, causing downstream applications to break silently that are expensive to resolve. Data validation has thus become an important topic, as evidenced by notable recent efforts from Google and Amazon, where the objective is to catch data quality issues early as they arise in the pipelines. Our experience on production data suggests, however, that on string-valued data, these existing approaches yield high false-positive rates and frequently require human intervention. In this work, we develop a corpus-driven approach to auto-validate \emph{machine-generated data} by inferring suitable data-validation "patterns" that accurately describe the underlying data domain, which minimizes false positives while maximizing data quality issues caught. Evaluations using production data from real data lakes suggest that Auto-Validate is substantially more effective than existing methods. Part of this technology ships as an Auto-Tag feature in Microsoft Azure Purview.