Luoyi Fu

Cheng Deng, Tianhang Zhang, Zhongmou He et al. · meta-ai, mila

Large language models (LLMs) have achieved great success in general domains of natural language processing. In this paper, we bring LLMs to the realm of geoscience with the objective of advancing research and applications in this field. To this end, we present the first-ever LLM in geoscience, K2, alongside a suite of resources developed to further promote LLM research within geoscience. For instance, we have curated the first geoscience instruction tuning dataset, GeoSignal, which aims to align LLM responses to geoscience-related user queries. Additionally, we have established the first geoscience benchmark, GeoBench, to evaluate LLMs in the context of geoscience. In this work, we experiment with a complete recipe to adapt a pre-trained general-domain LLM to the geoscience domain. Specifically, we further train the LLaMA-7B model on 5.5B tokens of geoscience text corpus, including over 1 million pieces of geoscience literature, and utilize GeoSignal's supervised data to fine-tune the model. Moreover, we share a protocol that can efficiently gather domain-specific data and construct domain-supervised data, even in situations where manpower is scarce. Meanwhile, we equip K2 with the abilities of using tools to be a naive geoscience aide. Experiments conducted on the GeoBench demonstrate the effectiveness of our approach and datasets on geoscience knowledge understanding and utilization.We open-source all the training data and K2 model checkpoints at https://github.com/davendw49/k2.

Ze Zhao, Yuhui He, Lyuwen Wu et al.

Reasoning on Temporal Knowledge Graphs (TKGs) is essential for predicting future events and time-aware facts. While existing methods are effective at capturing relational dynamics, their performance is limited by a closed-world assumption, which fails to account for emerging entities not present in the training. Notably, these entities continuously join the network without historical interactions. Empirical study reveals that emerging entities are widespread in TKGs, comprising roughly 25\% of all entities. The absence of historical interactions of these entities leads to significant performance degradation in reasoning tasks. Whereas, we observe that entities with semantic similarities often exhibit comparable interaction histories, suggesting the presence of transferable temporal patterns. Inspired by this insight, we propose TransFIR (Transferable Inductive Reasoning), a novel framework that leverages historical interaction sequences from semantically similar known entities to support inductive reasoning. Specifically, we propose a codebook-based classifier that categorizes emerging entities into latent semantic clusters, allowing them to adopt reasoning patterns from similar entities. Experimental results demonstrate that TransFIR outperforms all baselines in reasoning on emerging entities, achieving an average improvement of 28.6% in Mean Reciprocal Rank (MRR) across multiple datasets. The implementations are available at https://github.com/zhaodazhuang2333/TransFIR.

Bin Lu, Xiaoying Gan, Weinan Zhang et al.

Spatio-temporal graph learning is a key method for urban computing tasks, such as traffic flow, taxi demand and air quality forecasting. Due to the high cost of data collection, some developing cities have few available data, which makes it infeasible to train a well-performed model. To address this challenge, cross-city knowledge transfer has shown its promise, where the model learned from data-sufficient cities is leveraged to benefit the learning process of data-scarce cities. However, the spatio-temporal graphs among different cities show irregular structures and varied features, which limits the feasibility of existing Few-Shot Learning (\emph{FSL}) methods. Therefore, we propose a model-agnostic few-shot learning framework for spatio-temporal graph called ST-GFSL. Specifically, to enhance feature extraction by transfering cross-city knowledge, ST-GFSL proposes to generate non-shared parameters based on node-level meta knowledge. The nodes in target city transfer the knowledge via parameter matching, retrieving from similar spatio-temporal characteristics. Furthermore, we propose to reconstruct the graph structure during meta-learning. The graph reconstruction loss is defined to guide structure-aware learning, avoiding structure deviation among different datasets. We conduct comprehensive experiments on four traffic speed prediction benchmarks and the results demonstrate the effectiveness of ST-GFSL compared with state-of-the-art methods.

Yi Xu, Luoyi Fu, Zhouhan Lin et al. · meta-ai, mila

Graph-to-text (G2T) generation and text-to-graph (T2G) triple extraction are two essential tasks for constructing and applying knowledge graphs. Existing unsupervised approaches turn out to be suitable candidates for jointly learning the two tasks due to their avoidance of using graph-text parallel data. However, they are composed of multiple modules and still require both entity information and relation type in the training process. To this end, we propose INFINITY, a simple yet effective unsupervised approach that does not require external annotation tools or additional parallel information. It achieves fully unsupervised graph-text mutual conversion for the first time. Specifically, INFINITY treats both G2T and T2G as a bidirectional sequence generation task by fine-tuning only one pretrained seq2seq model. A novel back-translation-based framework is then designed to automatically generate continuous synthetic parallel data. To obtain reasonable graph sequences with structural information from source texts, INFINITY employs reward-based training loss by leveraging the advantage of reward augmented maximum likelihood. As a fully unsupervised framework, INFINITY is empirically verified to outperform state-of-the-art baselines for G2T and T2G tasks.

Bin Lu, Xiaoying Gan, Lina Yang et al.

With the tremendous expansion of graphs data, node classification shows its great importance in many real-world applications. Existing graph neural network based methods mainly focus on classifying unlabeled nodes within fixed classes with abundant labeling. However, in many practical scenarios, graph evolves with emergence of new nodes and edges. Novel classes appear incrementally along with few labeling due to its newly emergence or lack of exploration. In this paper, we focus on this challenging but practical graph few-shot class-incremental learning (GFSCIL) problem and propose a novel method called Geometer. Instead of replacing and retraining the fully connected neural network classifer, Geometer predicts the label of a node by finding the nearest class prototype. Prototype is a vector representing a class in the metric space. With the pop-up of novel classes, Geometer learns and adjusts the attention-based prototypes by observing the geometric proximity, uniformity and separability. Teacher-student knowledge distillation and biased sampling are further introduced to mitigate catastrophic forgetting and unbalanced labeling problem respectively. Experimental results on four public datasets demonstrate that Geometer achieves a substantial improvement of 9.46% to 27.60% over state-of-the-art methods.

Huawei Ji, Cheng Deng, Bo Xue et al.

With the development of data-centric AI, the focus has shifted from model-driven approaches to improving data quality. Academic literature, as one of the crucial types, is predominantly stored in PDF formats and needs to be parsed into texts before further processing. However, parsing diverse structured texts in academic literature remains challenging due to the lack of datasets that cover various text structures. In this paper, we introduce AceParse, the first comprehensive dataset designed to support the parsing of a wide range of structured texts, including formulas, tables, lists, algorithms, and sentences with embedded mathematical expressions. Based on AceParse, we fine-tuned a multimodal model, named AceParser, which accurately parses various structured texts within academic literature. This model outperforms the previous state-of-the-art by 4.1% in terms of F1 score and by 5% in Jaccard Similarity, demonstrating the potential of multimodal models in academic literature parsing. Our dataset is available at https://github.com/JHW5981/AceParse.

Yi Xu, Junjie Ou, Hui Xu et al.

Temporal knowledge graph, serving as an effective way to store and model dynamic relations, shows promising prospects in event forecasting. However, most temporal knowledge graph reasoning methods are highly dependent on the recurrence or periodicity of events, which brings challenges to inferring future events related to entities that lack historical interaction. In fact, the current moment is often the combined effect of a small part of historical information and those unobserved underlying factors. To this end, we propose a new event forecasting model called Contrastive Event Network (CENET), based on a novel training framework of historical contrastive learning. CENET learns both the historical and non-historical dependency to distinguish the most potential entities that can best match the given query. Simultaneously, it trains representations of queries to investigate whether the current moment depends more on historical or non-historical events by launching contrastive learning. The representations further help train a binary classifier whose output is a boolean mask to indicate related entities in the search space. During the inference process, CENET employs a mask-based strategy to generate the final results. We evaluate our proposed model on five benchmark graphs. The results demonstrate that CENET significantly outperforms all existing methods in most metrics, achieving at least $8.3\%$ relative improvement of Hits@1 over previous state-of-the-art baselines on event-based datasets.

Jingyao Wu, Bin Lu, Zijun Di et al.

Large language models show great potential in unstructured data understanding, but still face significant challenges with graphs due to their structural hallucination. Existing approaches mainly either verbalize graphs into natural language, which leads to excessive token consumption and scattered attention, or transform graphs into trainable continuous embeddings (i.e., soft prompt), but exhibit severe misalignment with original text tokens. To solve this problem, we propose to incorporate one special token <SOG_k> to fully represent the Structure Of Graph within a unified token space, facilitating explicit topology input and structural information sharing. Specifically, we propose a topology-aware structural tokenizer that maps each graph topology into a highly selective single token. Afterwards, we construct a set of hybrid structure Question-Answering corpora to align new structural tokens with existing text tokens. With this approach, <SOG_k> empowers LLMs to understand, generate, and reason in a concise and accurate manner. Extensive experiments on five graph-level benchmarks demonstrate the superiority of our method, achieving a performance improvement of 9.9% to 41.4% compared to the baselines while exhibiting interpretability and consistency. Furthermore, our method provides a flexible extension to node-level tasks, enabling both global and local structural understanding. The codebase is publicly available at https://github.com/Jingyao-Wu/SOG.

Tianhang Zhang, Lin Qiu, Qipeng Guo et al.

Large Language Models (LLMs) have gained significant popularity for their impressive performance across diverse fields. However, LLMs are prone to hallucinate untruthful or nonsensical outputs that fail to meet user expectations in many real-world applications. Existing works for detecting hallucinations in LLMs either rely on external knowledge for reference retrieval or require sampling multiple responses from the LLM for consistency verification, making these methods costly and inefficient. In this paper, we propose a novel reference-free, uncertainty-based method for detecting hallucinations in LLMs. Our approach imitates human focus in factuality checking from three aspects: 1) focus on the most informative and important keywords in the given text; 2) focus on the unreliable tokens in historical context which may lead to a cascade of hallucinations; and 3) focus on the token properties such as token type and token frequency. Experimental results on relevant datasets demonstrate the effectiveness of our proposed method, which achieves state-of-the-art performance across all the evaluation metrics and eliminates the need for additional information.

Qi Li, Yuyang Ren, Xingli Wang et al.

Understanding the origin and influence of the publication's idea is critical to conducting scientific research. However, the proliferation of scientific publications makes it difficult for researchers to sort out the evolution of all relevant literature. To this end, we present IdeaReader, a machine reading system that finds out which papers are most likely to inspire or be influenced by the target publication and summarizes the ideas of these papers in natural language. Specifically, IdeaReader first clusters the references and citations (first-order or higher-order) of the target publication, and the obtained clusters are regarded as the topics that inspire or are influenced by the target publication. It then picks out the important papers from each cluster to extract the skeleton of the idea flow. Finally, IdeaReader automatically generates a literature review of the important papers in each topic. Our system can help researchers gain insight into how scientific ideas flow from the target publication's references to citations by the automatically generated survey and the visualization of idea flow.

Bin Lu, Xiaoying Gan, Ze Zhao et al.

Graph Neural Network (GNN) has demonstrated extraordinary performance in classifying graph properties. However, due to the selection bias of training and testing data (e.g., training on small graphs and testing on large graphs, or training on dense graphs and testing on sparse graphs), distribution deviation is widespread. More importantly, we often observe \emph{hybrid structure distribution shift} of both scale and density, despite of one-sided biased data partition. The spurious correlations over hybrid distribution deviation degrade the performance of previous GNN methods and show large instability among different datasets. To alleviate this problem, we propose \texttt{OOD-GMixup} to jointly manipulate the training distribution with \emph{controllable data augmentation} in metric space. Specifically, we first extract the graph rationales to eliminate the spurious correlations due to irrelevant information. Secondly, we generate virtual samples with perturbation on graph rationale representation domain to obtain potential OOD training samples. Finally, we propose OOD calibration to measure the distribution deviation of virtual samples by leveraging Extreme Value Theory, and further actively control the training distribution by emphasizing the impact of virtual OOD samples. Extensive studies on several real-world datasets on graph classification demonstrate the superiority of our proposed method over state-of-the-art baselines.

Yi Xu, Shuqian Sheng, Bo Xue et al.

Researchers usually come up with new ideas only after thoroughly comprehending vast quantities of literature. The difficulty of this procedure is exacerbated by the fact that the number of academic publications is growing exponentially. In this study, we devise a framework based on concept co-occurrence for academic idea inspiration, which has been integrated into a research assistant system. From our perspective, the fusion of two concepts that co-occur in an academic paper can be regarded as an important way of the emergence of a new idea. We construct evolving concept graphs according to the co-occurrence relationship of concepts from 20 disciplines or topics. Then we design a temporal link prediction method based on masked language model to explore potential connections between different concepts. To verbalize the newly discovered connections, we also utilize the pretrained language model to generate a description of an idea based on a new data structure called co-occurrence citation quintuple. We evaluate our proposed system using both automatic metrics and human assessment. The results demonstrate that our system has broad prospects and can assist researchers in expediting the process of discovering new ideas.

Cheng Deng, Bo Tong, Luoyi Fu et al.

In the research of end-to-end dialogue systems, using real-world knowledge to generate natural, fluent, and human-like utterances with correct answers is crucial. However, domain-specific conversational dialogue systems may be incoherent and introduce erroneous external information to answer questions due to the out-of-vocabulary issue or the wrong knowledge from the parameters of the neural network. In this work, we propose PK-Chat, a Pointer network guided Knowledge-driven generative dialogue model, incorporating a unified pretrained language model and a pointer network over knowledge graphs. The words generated by PK-Chat in the dialogue are derived from the prediction of word lists and the direct prediction of the external knowledge graph knowledge. Moreover, based on the PK-Chat, a dialogue system is built for academic scenarios in the case of geosciences. Finally, an academic dialogue benchmark is constructed to evaluate the quality of dialogue systems in academic scenarios and the source code is available online.

Yi Xu, Bo Xue, Shuqian Sheng et al.

In the ever-expanding landscape of academic research, the proliferation of ideas presents a significant challenge for researchers: discerning valuable ideas from the less impactful ones. The ability to efficiently evaluate the potential of these ideas is crucial for the advancement of science and paper review. In this work, we focus on idea assessment, which aims to leverage the knowledge of large language models to assess the merit of scientific ideas. First, we investigate existing text evaluation research and define the problem of quantitative evaluation of ideas. Second, we curate and release a benchmark dataset from nearly four thousand manuscript papers with full texts, meticulously designed to train and evaluate the performance of different approaches to this task. Third, we establish a framework for quantifying the value of ideas by employing representations in a specific layer of large language models. Experimental results show that the scores predicted by our method are relatively consistent with those of humans. Our findings suggest that the representations of large language models hold more potential in quantifying the value of ideas than their generative outputs, demonstrating a promising avenue for automating the idea assessment process.

Shiqing Gao, Jiaxin Ding, Luoyi Fu et al.

In Constrained Reinforcement Learning (CRL), agents explore the environment to learn the optimal policy while satisfying constraints. The penalty function method has recently been studied as an effective approach for handling constraints, which imposes constraints penalties on the objective to transform the constrained problem into an unconstrained one. However, it is challenging to choose appropriate penalties that balance policy performance and constraint satisfaction efficiently. In this paper, we propose a theoretically guaranteed penalty function method, Exterior Penalty Policy Optimization (EPO), with adaptive penalties generated by a Penalty Metric Network (PMN). PMN responds appropriately to varying degrees of constraint violations, enabling efficient constraint satisfaction and safe exploration. We theoretically prove that EPO consistently improves constraint satisfaction with a convergence guarantee. We propose a new surrogate function and provide worst-case constraint violation and approximation error. In practice, we propose an effective smooth penalty function, which can be easily implemented with a first-order optimizer. Extensive experiments are conducted, showing that EPO outperforms the baselines in terms of policy performance and constraint satisfaction with a stable training process, particularly on complex tasks.

Huawei Ji, Yuanhao Sun, Yuan Jin et al.

Visual token pruning methods effectively mitigate the quadratic computational growth caused by processing high-resolution images and video frames in vision-language models (VLMs). However, existing approaches rely on predefined pruning configurations without determining whether they achieve computation-performance optimality. In this work, we introduce , a novel framework that formulates visual token pruning as a Pareto configuration optimization problem to automatically identify optimal configurations. Our approach employs continuous relaxation and straight-through estimators to enable gradient-based search, solved via the Augmented Lagrangian method. Extensive experiments across 8 visual benchmarks demonstrate that effectively approximates the empirical Pareto frontier obtained through grid search and generalizes well across various pruning methods and VLM architectures. Furthermore, through learnable kernel functions, we investigate layer-wise pruning patterns and reveal that multi-step progressive pruning captures VLMs' hierarchical compression structure, achieving superior accuracy-efficiency trade-offs compared to single-layer approaches.

Cheng Deng, Jiaxin Ding, Luoyi Fu et al.

The pandemic of COVID-19 has inspired extensive works across different research fields. Existing literature and knowledge platforms on COVID-19 only focus on collecting papers on biology and medicine, neglecting the interdisciplinary efforts, which hurdles knowledge sharing and research collaborations between fields to address the problem. Studying interdisciplinary researches requires effective paper category classification and efficient cross-domain knowledge extraction and integration. In this work, we propose Covidia, COVID-19 interdisciplinary academic knowledge graph to bridge the gap between knowledge of COVID-19 on different domains. We design frameworks based on contrastive learning for disciplinary classification, and propose a new academic knowledge graph scheme for entity extraction, relation classification and ontology management in accordance with interdisciplinary researches. Based on Covidia, we also establish knowledge discovery benchmarks for finding COVID-19 research communities and predicting potential links.

Bo Xue, Yunchong Song, Fanghao Shao et al.

Standard autoregressive language models generate text token-by-token from a fixed vocabulary, inducing a tree-structured state space when viewing token sampling as an action, which limits flexibility and expressiveness. Recent work introduces dynamic vocabulary by sampling retrieved text spans but overlooks that the same sentence can be composed of spans of varying lengths, lacking explicit modeling of the directed acyclic graph (DAG) state space. This leads to restricted exploration of compositional paths and is biased toward the chosen path. Generative Flow Networks (GFlowNets) are powerful for efficient exploring and generalizing over state spaces, particularly those with a DAG structure. However, prior GFlowNets-based language models operate at the token level and remain confined to tree-structured spaces, limiting their potential. In this work, we propose Flow of SpanS (FOSS), a principled GFlowNets framework for span generation. FoSS constructs a dynamic span vocabulary by segmenting the retrieved text flexibly, ensuring a DAG-structured state space, which allows GFlowNets to explore diverse compositional paths and improve generalization. With specialized reward models, FoSS generates diverse, high-quality text. Empirically, FoSS improves MAUVE scores by up to 12.5% over Transformer on text generation and achieves 3.5% gains on knowledge-intensive tasks, consistently outperforming state-of-the-art methods. Scaling experiments further demonstrate FoSS benefits from larger models, more data, and richer retrieval corpora, retaining its advantage over strong baselines.

Zijun Di, Bin Lu, Huquan Kang et al.

Large language models (LLMs) have demonstrated promising capabilities in Text-Attributed Graph (TAG) understanding. Recent studies typically focus on verbalizing the graph structures via handcrafted prompts, feeding the target node and its neighborhood context into LLMs. However, constrained by the context window, existing methods mainly resort to random sampling, often implemented via dropping node/edge randomly, which inevitably introduces noise and cause reasoning instability. We argue that graphs inherently contain rich structural and semantic information, and that their effective exploitation can unlock potential gains in LLMs reasoning performance. To this end, we propose Homophily-aware Structural and Semantic Compression for LLMs (HS2C), a framework centered on exploiting graph homophily. Structurally, guided by the principle of Structural Entropy minimization, we perform a global hierarchical partition that decodes the graph's essential topology. This partition identifies naturally cohesive, homophilic communities, while discarding stochastic connectivity noise. Semantically, we deliver the detected structural homophily to the LLM, empowering it to perform differentiated semantic aggregation based on predefined community type. This process compresses redundant background contexts into concise community-level consensus, selectively preserving semantically homophilic information aligned with the target nodes. Extensive experiments on 10 node-level benchmarks across LLMs of varying sizes and families demonstrate that, by feeding LLMs with structurally and semantically compressed inputs, HS2C simultaneously enhances the compression rate and downstream inference accuracy, validating its superiority and scalability. Extensions to 7 diverse graph-level benchmarks further consolidate HS2C's task generalizability.

Bo Xue, Yuan Jin, Luoyi Fu et al.

Knowledge graph reasoning (KGR) infers missing facts, with recent advances increasingly harnessing the semantic priors and reasoning abilities of Large Language Models (LLMs). However, prevailing generative paradigms are prone to memorizing surface-level co-occurrences rather than learning genuine relational semantics, limiting out-of-distribution generalization. To address this, we propose RADAR, which reformulates KGR from generative pattern matching to discriminative relational reasoning. We recast KGR as discriminative entity selection, where reinforcement learning enforces relative entity separability beyond token-likelihood imitation. Leveraging this separability, inference operates directly in representation space, ensuring consistency with the discriminative optimization and bypassing generation-induced hallucinations. Across four benchmarks, RADAR achieves 5-6% relative gains on link prediction and triple classification over strong LLM baselines, while increasing task-relevant mutual information in intermediate representations by 62.9%, indicating more robust and transferable relational reasoning.

Bo Xue, Yi Xu, Bolei Ma et al.

Traditional knowledge graph completion (KGC) methods rely solely on structural information and struggle with sparsity, while Large Language Models (LLMs) address these limitations through rich world knowledge and strong context modeling. Fine-tuning LLMs is effective but costly, while non-fine-tuned LLMs are efficient but suboptimal. To address this trade-off, we propose \textbf{FLAME}, a framework that extracts context-aware hidden states from intermediate layers of frozen LLMs to train data-efficient KGC classifiers. We bridge LLM-KG semantic gaps via subgraph-based entity descriptions and employ sliced mutual information (SMI) to quantify task-relevant information in representations. Experiments demonstrate that FLAME achieves 47\% improvement over non-fine-tuned LLM baselines and, to our knowledge, is the first to achieve fine-tuned performance with $188\times$ memory efficiency and $26.11\times$ speedup.

Tingyan Ma, Wei Liu, Bin Lu et al.

The explosive growth of data fuels data-driven research, facilitating progress across diverse domains. The FAIR principles emerge as a guiding standard, aiming to enhance the findability, accessibility, interoperability, and reusability of data. However, current efforts primarily focus on manual data FAIRification, which can only handle targeted data and lack efficiency. To address this issue, we propose AutoFAIR, an architecture designed to enhance data FAIRness automately. Firstly, We align each data and metadata operation with specific FAIR indicators to guide machine-executable actions. Then, We utilize Web Reader to automatically extract metadata based on language models, even in the absence of structured data webpage schemas. Subsequently, FAIR Alignment is employed to make metadata comply with FAIR principles by ontology guidance and semantic matching. Finally, by applying AutoFAIR to various data, especially in the field of mountain hazards, we observe significant improvements in findability, accessibility, interoperability, and reusability of data. The FAIRness scores before and after applying AutoFAIR indicate enhanced data value.

Yi Xu, Junjie Ou, Hui Xu et al.

Temporal knowledge graphs, representing the dynamic relationships and interactions between entities over time, have been identified as a promising approach for event forecasting. However, a limitation of most temporal knowledge graph reasoning methods is their heavy reliance on the recurrence or periodicity of events, which brings challenges to inferring future events related to entities that lack historical interaction. In fact, the current state of affairs is often the result of a combination of historical information and underlying factors that are not directly observable. To this end, we investigate the limits of historical information for temporal knowledge graph extrapolation and propose a new event forecasting model called Contrastive Event Network (CENET) based on a novel training framework of historical contrastive learning. CENET learns both the historical and non-historical dependency to distinguish the most potential entities that best match the given query. Simultaneously, by launching contrastive learning, it trains representations of queries to probe whether the current moment is more dependent on historical or non-historical events. These representations further help train a binary classifier, whose output is a boolean mask, indicating the related entities in the search space. During the inference process, CENET employs a mask-based strategy to generate the final results. We evaluate our proposed model on five benchmark graphs. The results demonstrate that CENET significantly outperforms all existing methods in most metrics, achieving at least 8.3% relative improvement of Hits@1 over previous state-of-the-art baselines on event-based datasets.

Zhouhan Lin, Cheng Deng, Le Zhou et al.

Large language models (LLMs) have achieved huge success for their general knowledge and ability to solve a wide spectrum of tasks in natural language processing (NLP). Due to their impressive abilities, LLMs have shed light on potential inter-discipline applications to foster scientific discoveries of a specific domain by using artificial intelligence (AI for science, AI4S). In the meantime, utilizing NLP techniques in geoscience research and practice is wide and convoluted, contributing from knowledge extraction and document classification to question answering and knowledge discovery. In this work, we take the initial step to leverage LLM for science, through a rather straightforward approach. We try to specialize an LLM into geoscience, by further pre-training the model with a vast amount of texts in geoscience, as well as supervised fine-tuning (SFT) the resulting model with our custom collected instruction tuning dataset. These efforts result in a model GeoGalactica consisting of 30 billion parameters. To our best knowledge, it is the largest language model for the geoscience domain. More specifically, GeoGalactica is from further pre-training of Galactica. We train GeoGalactica over a geoscience-related text corpus containing 65 billion tokens, preserving as the largest geoscience-specific text corpus. Then we fine-tune the model with 1 million pairs of instruction-tuning data consisting of questions that demand professional geoscience knowledge to answer. In this technical report, we will illustrate in detail all aspects of GeoGalactica, including data collection, data cleaning, base model selection, pre-training, SFT, and evaluation. We open-source our data curation tools and the checkpoints of GeoGalactica during the first 3/4 of pre-training.

Cheng Deng, Fan Xu, Jiaxing Ding et al.

Graph representation learning has been widely studied and demonstrated effectiveness in various graph tasks. Most existing works embed graph data in the Euclidean space, while recent works extend the embedding models to hyperbolic or spherical spaces to achieve better performance on graphs with complex structures, such as hierarchical or ring structures. Fusing the embedding from different manifolds can further take advantage of the embedding capabilities over different graph structures. However, existing embedding fusion methods mostly focus on concatenating or summing up the output embeddings, without considering interacting and aligning the embeddings of the same vertices on different manifolds, which can lead to distortion and impression in the final fusion results. Besides, it is also challenging to fuse the embeddings of the same vertices from different coordinate systems. In face of these challenges, we propose the Fused Manifold Graph Neural Network (FMGNN), a novel GNN architecture that embeds graphs into different Riemannian manifolds with interaction and alignment among these manifolds during training and fuses the vertex embeddings through the distances on different manifolds between vertices and selected landmarks, geometric coresets. Our experiments demonstrate that FMGNN yields superior performance over strong baselines on the benchmarks of node classification and link prediction tasks.

Ze Zhao, Bin Lu, Xiaoying Gan et al.

Reasoning over Knowledge Graphs (KGs) plays a pivotal role in knowledge graph completion or question answering systems, providing richer and more accurate triples and attributes. As numerical attributes become increasingly essential in characterizing entities and relations in KGs, the ability to reason over these attributes has gained significant importance. Existing graph-based methods such as Graph Neural Networks (GNNs) and Knowledge Graph Embeddings (KGEs), primarily focus on aggregating homogeneous local neighbors and implicitly embedding diverse triples. However, these approaches often fail to fully leverage the potential of logical paths within the graph, limiting their effectiveness in exploiting the reasoning process. To address these limitations, we propose ChainsFormer, a novel chain-based framework designed to support numerical reasoning. Chainsformer not only explicitly constructs logical chains but also expands the reasoning depth to multiple hops. Specially, we introduces Relation-Attribute Chains (RA-Chains), a specialized logic chain, to model sequential reasoning patterns. ChainsFormer captures the step-by-step nature of multi-hop reasoning along RA-Chains by employing sequential in-context learning. To mitigate the impact of noisy chains, we propose a hyperbolic affinity scoring mechanism that selects relevant logic chains in a variable-resolution space. Furthermore, ChainsFormer incorporates an attention-based numerical reasoner to identify critical reasoning paths, enhancing both reasoning accuracy and transparency. Experimental results demonstrate that ChainsFormer significantly outperforms state-of-the-art methods, achieving up to a 20.0% improvement in performance. The implementations are available at https://github.com/zhaodazhuang2333/ChainsFormer.

Shuqian Sheng, Yi Xu, Tianhang Zhang et al.

The era of Large Language Models (LLMs) raises new demands for automatic evaluation metrics, which should be adaptable to various application scenarios while maintaining low cost and effectiveness. Traditional metrics for automatic text evaluation are often tailored to specific scenarios, while LLM-based evaluation metrics are costly, requiring fine-tuning or rely heavily on the generation capabilities of LLMs. Besides, previous LLM-based metrics ignore the fact that, within the space of LLM representations, there exist direction vectors that indicate the estimation of text quality. To this end, we introduce RepEval, a metric that leverages the projection of LLM representations for evaluation. Through simple prompt modifications, RepEval can easily transition to various tasks, requiring only minimal sample pairs for direction vector construction. Results on fourteen datasets across two evaluation tasks demonstrate the high effectiveness of our method, which exhibits a higher correlation with human judgments than previous methods, even in complex evaluation scenarios involving pair-wise selection under nuanced aspects. Our work underscores the richness of information regarding text quality embedded within LLM representations, offering insights for the development of new metrics.

Shuqian Sheng, Yi Xu, Luoyi Fu et al.

The majority of automatic metrics for evaluating NLG systems are reference-based. However, the challenge of collecting human annotation results in a lack of reliable references in numerous application scenarios. Despite recent advancements in reference-free metrics, it has not been well understood when and where they can be used as an alternative to reference-based metrics. In this study, by employing diverse analytical approaches, we comprehensively assess the performance of both metrics across a wide range of NLG tasks, encompassing eight datasets and eight evaluation models. Based on solid experiments, the results show that reference-free metrics exhibit a higher correlation with human judgment and greater sensitivity to deficiencies in language quality. However, their effectiveness varies across tasks and is influenced by the quality of candidate texts. Therefore, it's important to assess the performance of reference-free metrics before applying them to a new task, especially when inputs are in uncommon form or when the answer space is highly variable. Our study can provide insight into the appropriate application of automatic metrics and the impact of metric choice on evaluation performance.

Bin Lu, Ze Zhao, Luyu Han et al.

Accurately reconstructing the global ocean deoxygenation over a century is crucial for assessing and protecting marine ecosystem. Existing expert-dominated numerical simulations fail to catch up with the dynamic variation caused by global warming and human activities. Besides, due to the high-cost data collection, the historical observations are severely sparse, leading to big challenge for precise reconstruction. In this work, we propose OxyGenerator, the first deep learning based model, to reconstruct the global ocean deoxygenation from 1920 to 2023. Specifically, to address the heterogeneity across large temporal and spatial scales, we propose zoning-varying graph message-passing to capture the complex oceanographic correlations between missing values and sparse observations. Additionally, to further calibrate the uncertainty, we incorporate inductive bias from dissolved oxygen (DO) variations and chemical effects. Compared with in-situ DO observations, OxyGenerator significantly outperforms CMIP6 numerical simulations, reducing MAPE by 38.77%, demonstrating a promising potential to understand the "breathless ocean" in data-driven manner.

Xinbing Wang, Luoyi Fu, Xiaoying Gan et al.

The exponential growth of scientific literature requires effective management and extraction of valuable insights. While existing scientific search engines excel at delivering search results based on relational databases, they often neglect the analysis of collaborations between scientific entities and the evolution of ideas, as well as the in-depth analysis of content within scientific publications. The representation of heterogeneous graphs and the effective measurement, analysis, and mining of such graphs pose significant challenges. To address these challenges, we present AceMap, an academic system designed for knowledge discovery through academic graph. We present advanced database construction techniques to build the comprehensive AceMap database with large-scale academic entities that contain rich visual, textual, and numerical information. AceMap also employs innovative visualization, quantification, and analysis methods to explore associations and logical relationships among academic entities. AceMap introduces large-scale academic network visualization techniques centered on nebular graphs, providing a comprehensive view of academic networks from multiple perspectives. In addition, AceMap proposes a unified metric based on structural entropy to quantitatively measure the knowledge content of different academic entities. Moreover, AceMap provides advanced analysis capabilities, including tracing the evolution of academic ideas through citation relationships and concept co-occurrence, and generating concise summaries informed by this evolutionary process. In addition, AceMap uses machine reading methods to generate potential new ideas at the intersection of different fields. Exploring the integration of large language models and knowledge graphs is a promising direction for future research in idea evolution. Please visit \url{https://www.acemap.info} for further exploration.

Peng Yu, Zeyuan Zhao, Shao Zhang et al.

Large language models (LLMs) have achieved significant advancements in reasoning capabilities through reinforcement learning (RL) via environmental exploration. As the intrinsic properties of the environment determine the abilities that LLMs can learn, the environment plays a important role in the RL finetuning process. An ideal LLM reasoning environment should possess three core characteristics: scalability, generalizable reasoning, and verifiability. However, existing mathematical and coding environments are difficult to scale due to heavy reliance on expert annotation, while the skills learned in game-based environments are too specialized to generalize. To bridge this gap, we introduce the \textbf{S}tructured \textbf{I}n-context \textbf{E}nvironment (SIE) framework. SIE achieves scalability by automatically constructing reasoning environments from large-scale structured data, where the rich compositional patterns naturally support generalizable reasoning. Moreover, the explicit schemas and reasoning chains in structured data provide a foundation for rule-based verifiability. Experimental results show that SIE framework not only achieves substantial improvements in in-domain structured reasoning, but also enables the learned compositional reasoning skills to generalize effectively to out-of-domain mathematical and logical reasoning tasks. We further explored learning in information-limited partial SIEs and found that LLMs can infer the missing information through exploring the environment, leading to robust reasoning improvements and generalization performance.

Kailong Wu, Yule Xie, Jiaxin Ding et al.

Graph neural networks (GNN) have achieved remarkable success in a wide range of tasks by encoding features combined with topology to create effective representations. However, the fundamental problem of understanding and analyzing how graph topology influences the performance of learning models on downstream tasks has not yet been well understood. In this paper, we propose a metric, TopoInf, which characterizes the influence of graph topology by measuring the level of compatibility between the topological information of graph data and downstream task objectives. We provide analysis based on the decoupled GNNs on the contextual stochastic block model to demonstrate the effectiveness of the metric. Through extensive experiments, we demonstrate that TopoInf is an effective metric for measuring topological influence on corresponding tasks and can be further leveraged to enhance graph learning.

Hui Xu, Liyao Xiang, Youmin Le et al.

Graph matching pairs corresponding nodes across two or more graphs. The problem is difficult as it is hard to capture the structural similarity across graphs, especially on large graphs. We propose to incorporate high-order information for matching large-scale graphs. Iterated line graphs are introduced for the first time to describe such high-order information, based on which we present a new graph matching method, called High-order Graph Matching Network (HGMN), to learn not only the local structural correspondence, but also the hyperedge relations across graphs. We theoretically prove that iterated line graphs are more expressive than graph convolution networks in terms of aligning nodes. By imposing practical constraints, HGMN is made scalable to large-scale graphs. Experimental results on a variety of settings have shown that, HGMN acquires more accurate matching results than the state-of-the-art, verifying our method effectively captures the structural similarity across different graphs.

Luoyi Fu, Xinzhe Fu, Zhongzhao Hu et al.

A crucial privacy-driven issue nowadays is re-identifying anonymized social networks by mapping them to correlated cross-domain auxiliary networks. Prior works are typically based on modeling social networks as random graphs representing users and their relations, and subsequently quantify the quality of mappings through cost functions that are proposed without sufficient rationale. Also, it remains unknown how to algorithmically meet the demand of such quantifications, i.e., to find the minimizer of the cost functions. We address those concerns in a more realistic social network modeling parameterized by community structures that can be leveraged as side information for de-anonymization. By Maximum A Posteriori (MAP) estimation, our first contribution is new and well justified cost functions, which, when minimized, enjoy superiority to previous ones in finding the correct mapping with the highest probability. The feasibility of the cost functions is then for the first time algorithmically characterized. While proving the general multiplicative inapproximability, we are able to propose two algorithms, which, respectively, enjoy an ε-additive approximation and a conditional optimality in carrying out successful user re-identification. Our theoretical findings are empirically validated, with a notable dataset extracted from rare true cross-domain networks that reproduce genuine social network de-anonymization. Both theoretical and empirical observations also manifest the importance of community information in enhancing privacy inferencing.