David Atkinson

CL
h-index66
16papers
1,520citations
Novelty32%
AI Score54

16 Papers

9.2CYMay 12Code
Safe-Child-LLM: A Developmental Benchmark for Evaluating LLM Safety in Child-LLM Interactions

Junfeng Jiao, Saleh Afroogh, Kevin Chen et al.

As Large Language Models (LLMs) increasingly power applications used by children and adolescents, ensuring safe and age-appropriate interactions has become an urgent ethical imperative. Despite progress in AI safety, current evaluations predominantly focus on adults, neglecting the unique vulnerabilities of minors engaging with generative AI. We introduce Safe-Child-LLM, a comprehensive benchmark and dataset for systematically assessing LLM safety across two developmental stages: children (7-12) and adolescents (13-17). Our framework includes a novel multi-part dataset of 200 adversarial prompts, curated from red-teaming corpora (e.g., SG-Bench, HarmBench), with human-annotated labels for jailbreak success and a standardized 0-5 ethical refusal scale. Evaluating leading LLMs -- including ChatGPT, Claude, Gemini, LLaMA, DeepSeek, Grok, Vicuna, and Mistral -- we uncover critical safety deficiencies in child-facing scenarios. This work highlights the need for community-driven benchmarks to protect young users in LLM interactions. To promote transparency and collaborative advancement in ethical AI development, we are publicly releasing both our benchmark datasets and evaluation codebase at https://github.com/The-Responsible-AI-Initiative/Safe_Child_LLM_Benchmark.git

9.4CVAug 15, 2022
Where is VALDO? VAscular Lesions Detection and segmentatiOn challenge at MICCAI 2021

Carole H. Sudre, Kimberlin Van Wijnen, Florian Dubost et al.

Imaging markers of cerebral small vessel disease provide valuable information on brain health, but their manual assessment is time-consuming and hampered by substantial intra- and interrater variability. Automated rating may benefit biomedical research, as well as clinical assessment, but diagnostic reliability of existing algorithms is unknown. Here, we present the results of the \textit{VAscular Lesions DetectiOn and Segmentation} (\textit{Where is VALDO?}) challenge that was run as a satellite event at the international conference on Medical Image Computing and Computer Aided Intervention (MICCAI) 2021. This challenge aimed to promote the development of methods for automated detection and segmentation of small and sparse imaging markers of cerebral small vessel disease, namely enlarged perivascular spaces (EPVS) (Task 1), cerebral microbleeds (Task 2) and lacunes of presumed vascular origin (Task 3) while leveraging weak and noisy labels. Overall, 12 teams participated in the challenge proposing solutions for one or more tasks (4 for Task 1 - EPVS, 9 for Task 2 - Microbleeds and 6 for Task 3 - Lacunes). Multi-cohort data was used in both training and evaluation. Results showed a large variability in performance both across teams and across tasks, with promising results notably for Task 1 - EPVS and Task 2 - Microbleeds and not practically useful results yet for Task 3 - Lacunes. It also highlighted the performance inconsistency across cases that may deter use at an individual level, while still proving useful at a population level.

12.8IVJul 17, 2023
Combiner and HyperCombiner Networks: Rules to Combine Multimodality MR Images for Prostate Cancer Localisation

Wen Yan, Bernard Chiu, Ziyi Shen et al.

One of the distinct characteristics in radiologists' reading of multiparametric prostate MR scans, using reporting systems such as PI-RADS v2.1, is to score individual types of MR modalities, T2-weighted, diffusion-weighted, and dynamic contrast-enhanced, and then combine these image-modality-specific scores using standardised decision rules to predict the likelihood of clinically significant cancer. This work aims to demonstrate that it is feasible for low-dimensional parametric models to model such decision rules in the proposed Combiner networks, without compromising the accuracy of predicting radiologic labels: First, it is shown that either a linear mixture model or a nonlinear stacking model is sufficient to model PI-RADS decision rules for localising prostate cancer. Second, parameters of these (generalised) linear models are proposed as hyperparameters, to weigh multiple networks that independently represent individual image modalities in the Combiner network training, as opposed to end-to-end modality ensemble. A HyperCombiner network is developed to train a single image segmentation network that can be conditioned on these hyperparameters during inference, for much improved efficiency. Experimental results based on data from 850 patients, for the application of automating radiologist labelling multi-parametric MR, compare the proposed combiner networks with other commonly-adopted end-to-end networks. Using the added advantages of obtaining and interpreting the modality combining rules, in terms of the linear weights or odds-ratios on individual image modalities, three clinical applications are presented for prostate cancer segmentation, including modality availability assessment, importance quantification and rule discovery.

8.8CVJul 26, 2022Code
Cross-Modality Image Registration using a Training-Time Privileged Third Modality

Qianye Yang, David Atkinson, Yunguan Fu et al.

In this work, we consider the task of pairwise cross-modality image registration, which may benefit from exploiting additional images available only at training time from an additional modality that is different to those being registered. As an example, we focus on aligning intra-subject multiparametric Magnetic Resonance (mpMR) images, between T2-weighted (T2w) scans and diffusion-weighted scans with high b-value (DWI$_{high-b}$). For the application of localising tumours in mpMR images, diffusion scans with zero b-value (DWI$_{b=0}$) are considered easier to register to T2w due to the availability of corresponding features. We propose a learning from privileged modality algorithm, using a training-only imaging modality DWI$_{b=0}$, to support the challenging multi-modality registration problems. We present experimental results based on 369 sets of 3D multiparametric MRI images from 356 prostate cancer patients and report, with statistical significance, a lowered median target registration error of 4.34 mm, when registering the holdout DWI$_{high-b}$ and T2w image pairs, compared with that of 7.96 mm before registration. Results also show that the proposed learning-based registration networks enabled efficient registration with comparable or better accuracy, compared with a classical iterative algorithm and other tested learning-based methods with/without the additional modality. These compared algorithms also failed to produce any significantly improved alignment between DWI$_{high-b}$ and T2w in this challenging application.

8.9IVSep 12, 2023Code
ssVERDICT: Self-Supervised VERDICT-MRI for Enhanced Prostate Tumour Characterisation

Snigdha Sen, Saurabh Singh, Hayley Pye et al.

Purpose: Demonstrating and assessing self-supervised machine learning fitting of the VERDICT (Vascular, Extracellular and Restricted DIffusion for Cytometry in Tumours) model for prostate. Methods: We derive a self-supervised neural network for fitting VERDICT (ssVERDICT) that estimates parameter maps without training data. We compare the performance of ssVERDICT to two established baseline methods for fitting diffusion MRI models: conventional nonlinear least squares (NLLS) and supervised deep learning. We do this quantitatively on simulated data, by comparing the Pearson's correlation coefficient, mean-squared error (MSE), bias, and variance with respect to the simulated ground truth. We also calculate in vivo parameter maps on a cohort of 20 prostate cancer patients and compare the methods' performance in discriminating benign from cancerous tissue via Wilcoxon's signed-rank test. Results: In simulations, ssVERDICT outperforms the baseline methods (NLLS and supervised DL) in estimating all the parameters from the VERDICT prostate model in terms of Pearson's correlation coefficient, bias, and MSE. In vivo, ssVERDICT shows stronger lesion conspicuity across all parameter maps, and improves discrimination between benign and cancerous tissue over the baseline methods. Conclusion: ssVERDICT significantly outperforms state-of-the-art methods for VERDICT model fitting, and shows for the first time, fitting of a complex three-compartment biophysical model with machine learning without the requirement of explicit training labels.

16.2CYMay 12
LLM Harms: A Taxonomy and Discussion

Kevin Chen, Saleh Afroogh, Abhejay Murali et al.

This study addresses categories of harm surrounding Large Language Models (LLMs) in the field of artificial intelligence. It addresses five categories of harms addressed before, during, and after development of AI applications: pre-development, direct output, Misuse and Malicious Application, and downstream application. By underscoring the need to define risks of the current landscape to ensure accountability, transparency and navigating bias when adapting LLMs for practical applications. It proposes mitigation strategies and future directions for specific domains and a dynamic auditing system guiding responsible development and integration of LLMs in a standardized proposal.

41.3CLJan 31, 2024Code
Dolma: an Open Corpus of Three Trillion Tokens for Language Model Pretraining Research

Luca Soldaini, Rodney Kinney, Akshita Bhagia et al. · allen-ai, cmu

Information about pretraining corpora used to train the current best-performing language models is seldom discussed: commercial models rarely detail their data, and even open models are often released without accompanying training data or recipes to reproduce them. As a result, it is challenging to conduct and advance scientific research on language modeling, such as understanding how training data impacts model capabilities and limitations. To facilitate scientific research on language model pretraining, we curate and release Dolma, a three-trillion-token English corpus, built from a diverse mixture of web content, scientific papers, code, public-domain books, social media, and encyclopedic materials. We extensively document Dolma, including its design principles, details about its construction, and a summary of its contents. We present analyses and experimental results on intermediate states of Dolma to share what we have learned about important data curation practices. Finally, we open-source our data curation toolkit to enable reproduction of our work as well as support further research in large-scale data curation.

44.6CLFeb 1, 2024Code
OLMo: Accelerating the Science of Language Models

Dirk Groeneveld, Iz Beltagy, Pete Walsh et al. · allen-ai, cmu

Language models (LMs) have become ubiquitous in both NLP research and in commercial product offerings. As their commercial importance has surged, the most powerful models have become closed off, gated behind proprietary interfaces, with important details of their training data, architectures, and development undisclosed. Given the importance of these details in scientifically studying these models, including their biases and potential risks, we believe it is essential for the research community to have access to powerful, truly open LMs. To this end, we have built OLMo, a competitive, truly Open Language Model, to enable the scientific study of language models. Unlike most prior efforts that have only released model weights and inference code, we release OLMo alongside open training data and training and evaluation code. We hope this release will empower the open research community and inspire a new wave of innovation.

48.0CLDec 31, 2024Code
2 OLMo 2 Furious

Team OLMo, Pete Walsh, Luca Soldaini et al. · allen-ai, cambridge

We present OLMo 2, the next generation of our fully open language models. OLMo 2 includes a family of dense autoregressive language models at 7B, 13B and 32B scales with fully released artifacts -- model weights, full training data, training code and recipes, training logs and thousands of intermediate checkpoints. In this work, we describe our modified model architecture and training recipe, focusing on techniques for achieving better training stability and improved per-token efficiency. Our updated pretraining data mixture introduces a new, specialized data mix called Dolmino Mix 1124, which significantly improves model capabilities across many downstream task benchmarks when introduced via late-stage curriculum training (i.e. specialized data during the annealing phase of pretraining). Finally, we incorporate best practices from Tülu 3 to develop OLMo 2-Instruct, focusing on permissive data and extending our final-stage reinforcement learning with verifiable rewards (RLVR). Our OLMo 2 base models sit at the Pareto frontier of performance to training compute, often matching or outperforming open-weight only models like Llama 3.1, Qwen 2.5, and Gemma 2 while using fewer FLOPs and with fully transparent training data, code, and recipe. Our fully open OLMo 2-Instruct models are competitive with open-weight only models of comparable size and even some proprietary models like GPT-3.5 Turbo and GPT 4o Mini.

1.2CYOct 16, 2025Code
Open Shouldn't Mean Exempt: Open-Source Exceptionalism and Generative AI

David Atkinson

Any argument that open-source generative artificial intelligence (GenAI) is inherently ethical or legal solely because it is open source is flawed. Yet, this is the explicit or implicit stance of several open-source GenAI entities. This paper critically examines prevalent justifications for "open-source exceptionalism," demonstrating how contemporary open-source GenAI often inadvertently facilitates unlawful conduct and environmental degradation without genuinely disrupting established oligopolies. Furthermore, the paper exposes the unsubstantiated and strategic deployment of "democratization" and "innovation" rhetoric to advocate for regulatory exemptions not afforded to proprietary systems. The conclusion is that open-source developers must be held to the same legal and ethical standards as all other actors in the technological ecosystem. However, the paper proposes a narrowly tailored safe harbor designed to protect legitimate, non-commercial scientific research, contingent upon adherence to specific criteria. Ultimately, this paper advocates for a framework of responsible AI development, wherein openness is pursued within established ethical and legal boundaries, with due consideration for its broader societal implications.

15.9CLApr 4, 2024Code
Locating and Editing Factual Associations in Mamba

Arnab Sen Sharma, David Atkinson, David Bau

We investigate the mechanisms of factual recall in the Mamba state space model. Our work is inspired by previous findings in autoregressive transformer language models suggesting that their knowledge recall is localized to particular modules at specific token locations; we therefore ask whether factual recall in Mamba can be similarly localized. To investigate this, we conduct four lines of experiments on Mamba. First, we apply causal tracing or interchange interventions to localize key components inside Mamba that are responsible for recalling facts, revealing that specific components within middle layers show strong causal effects at the last token of the subject, while the causal effect of intervening on later layers is most pronounced at the last token of the prompt, matching previous findings on autoregressive transformers. Second, we show that rank-one model editing methods can successfully insert facts at specific locations, again resembling findings on transformer LMs. Third, we examine the linearity of Mamba's representations of factual relations. Finally we adapt attention-knockout techniques to Mamba in order to dissect information flow during factual recall. We compare Mamba directly to a similar-sized autoregressive transformer LM and conclude that despite significant differences in architectural approach, when it comes to factual recall, the two architectures share many similarities.

14.1CLMar 9, 2024Code
Algorithmic progress in language models

Anson Ho, Tamay Besiroglu, Ege Erdil et al. · harvard, stanford

We investigate the rate at which algorithms for pre-training language models have improved since the advent of deep learning. Using a dataset of over 200 language model evaluations on Wikitext and Penn Treebank spanning 2012-2023, we find that the compute required to reach a set performance threshold has halved approximately every 8 months, with a 95% confidence interval of around 5 to 14 months, substantially faster than hardware gains per Moore's Law. We estimate augmented scaling laws, which enable us to quantify algorithmic progress and determine the relative contributions of scaling models versus innovations in training algorithms. Despite the rapid pace of algorithmic progress and the development of new architectures such as the transformer, our analysis reveals that the increase in compute made an even larger contribution to overall performance improvements over this time period. Though limited by noisy benchmark data, our analysis quantifies the rapid progress in language modeling, shedding light on the relative contributions from compute and algorithms.

1.2CYApr 1, 2025
Unfair Learning: GenAI Exceptionalism and Copyright Law

David Atkinson

This paper challenges the argument that generative artificial intelligence (GenAI) is entitled to broad immunity from copyright law for reproducing copyrighted works without authorization due to a fair use defense. It examines fair use legal arguments and eight distinct substantive arguments, contending that every legal and substantive argument favoring fair use for GenAI applies equally, if not more so, to humans. Therefore, granting GenAI exceptional privileges in this domain is legally and logically inconsistent with withholding broad fair use exemptions from individual humans. It would mean no human would need to pay for virtually any copyright work again. The solution is to take a circumspect view of any fair use claim for mass copyright reproduction by any entity and focus on the first principles of whether permitting such exceptionalism for GenAI promotes science and the arts.

2.7CLJan 3, 2025Code
AGGA: A Dataset of Academic Guidelines for Generative AI and Large Language Models

Junfeng Jiao, Saleh Afroogh, Kevin Chen et al.

This study introduces AGGA, a dataset comprising 80 academic guidelines for the use of Generative AIs (GAIs) and Large Language Models (LLMs) in academic settings, meticulously collected from official university websites. The dataset contains 188,674 words and serves as a valuable resource for natural language processing tasks commonly applied in requirements engineering, such as model synthesis, abstraction identification, and document structure assessment. Additionally, AGGA can be further annotated to function as a benchmark for various tasks, including ambiguity detection, requirements categorization, and the identification of equivalent requirements. Our methodologically rigorous approach ensured a thorough examination, with a selection of universities that represent a diverse range of global institutions, including top-ranked universities across six continents. The dataset captures perspectives from a variety of academic fields, including humanities, technology, and both public and private institutions, offering a broad spectrum of insights into the integration of GAIs and LLMs in academia.

6.3IVAug 21, 2019
Improved MR to CT synthesis for PET/MR attenuation correction using Imitation Learning

Kerstin Kläser, Thomas Varsavsky, Pawel Markiewicz et al.

The ability to synthesise Computed Tomography images - commonly known as pseudo CT, or pCT - from MRI input data is commonly assessed using an intensity-wise similarity, such as an L2-norm between the ground truth CT and the pCT. However, given that the ultimate purpose is often to use the pCT as an attenuation map ($μ$-map) in Positron Emission Tomography Magnetic Resonance Imaging (PET/MRI), minimising the error between pCT and CT is not necessarily optimal. The main objective should be to predict a pCT that, when used as $μ$-map, reconstructs a pseudo PET (pPET) which is as close as possible to the gold standard PET. To this end, we propose a novel multi-hypothesis deep learning framework that generates pCTs by minimising a combination of the pixel-wise error between pCT and CT and a proposed metric-loss that itself is represented by a convolutional neural network (CNN) and aims to minimise subsequent PET residuals. The model is trained on a database of 400 paired MR/CT/PET image slices. Quantitative results show that the network generates pCTs that seem less accurate when evaluating the Mean Absolute Error on the pCT (69.68HU) compared to a baseline CNN (66.25HU), but lead to significant improvement in the PET reconstruction - 115a.u. compared to baseline 140a.u.

1.2MED-PHAug 22, 2018
Deep Boosted Regression for MR to CT Synthesis

Kerstin Kläser, Pawel Markiewicz, Marta Ranzini et al.

Attenuation correction is an essential requirement of positron emission tomography (PET) image reconstruction to allow for accurate quantification. However, attenuation correction is particularly challenging for PET-MRI as neither PET nor magnetic resonance imaging (MRI) can directly image tissue attenuation properties. MRI-based computed tomography (CT) synthesis has been proposed as an alternative to physics based and segmentation-based approaches that assign a population-based tissue density value in order to generate an attenuation map. We propose a novel deep fully convolutional neural network that generates synthetic CTs in a recursive manner by gradually reducing the residuals of the previous network, increasing the overall accuracy and generalisability, while keeping the number of trainable parameters within reasonable limits. The model is trained on a database of 20 pre-acquired MRI/CT pairs and a four-fold random bootstrapped validation with a 80:20 split is performed. Quantitative results show that the proposed framework outperforms a state-of-the-art atlas-based approach decreasing the Mean Absolute Error (MAE) from 131HU to 68HU for the synthetic CTs and reducing the PET reconstruction error from 14.3% to 7.2%.